Array 1 175-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWZ01000142.1 Nocardia neocaledoniensis NBRC 108232 sequence142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174 29 100.0 32 ............................. TGCACGACACGTTGGACGGTGCCGGGGTCGGC 113 29 100.0 32 ............................. CCGCACCCCGAGAACACCCTCACCGAGGGCCC 52 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CGTGGTAGTGCTGGTCCTCACCGCATGCCCGGCAGGGCTCCGCGGTCACCTCACTCGTTGGTTCCTCGAGGTCAGTCCGGGTGTGTTCGTGGGTGTGGTCAGTGCTCGGGTACGAGATCTCGCCTGGCAACGGGTGCTCGAACTGTGTAAAGACGGTCGCGCGATCATGATTCACACCACCCGTGGCGAACAGCGCCTGGCGTTCAAGACCCATAGACATGACTGGGAACCGATCGATATCGACGGCATTCACCTGATGCTTCGGCCGCACGCTGGTGACGGCAGCGGTGGCGGGGCACGGCCGGGATGGAGCAAGGCGAGTCGTTATCGTCGTGCGCATCAGGCGAAGCGCCAGCAGTCTGGGAGCGACGGAGAGGGTTAGGTTGTGTCTGAACTCAACTGGGCGTGCTGGCGGTGCGATCTTCGGTGCGTGGCCAGACGATCGTTCGAAAGTGAATGAGAATTGGCTGTGTGGCTTGTATCGCCGCAGGTCAGTTCGT # Right flank : CCACCGGTGTGGCTTCGCGGCGAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10940-9326 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWZ01000142.1 Nocardia neocaledoniensis NBRC 108232 sequence142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10939 29 100.0 32 ............................. GCCTCCTGCAGCAGCCTCACGAACTCCTCGTT 10878 29 100.0 33 ............................. CTGTGCGTCCTGCCGCGCCATGCGCCGATAGAC 10816 29 100.0 32 ............................. TCCCGGCTGGAACGGGGCATTGTCAAGTTCCA 10755 29 100.0 32 ............................. TGGGCGGTGTAGAAGCTCGGCGGTTCGACCTC 10694 29 100.0 32 ............................. GGGCGCCGAGTGGGCGTGGACCTCAAGACCGC 10633 29 100.0 32 ............................. AGGTGAGGGGAACCGTACGACTAGGGGGTGCA 10572 29 100.0 32 ............................. AAACGTCTGGACGCTATTGTTAAGCAACAAAA 10511 29 100.0 32 ............................. TGGATCTCCGGGGGAAGAAACGGATTGCTGTA 10450 29 100.0 33 ............................. TCCTGCAGCTGAGTGATCTCCGTCGGCCACAGG 10388 29 100.0 32 ............................. AACGCGAACCAGGTGACCATCGGTATCGAGGC 10327 29 100.0 33 ............................. GCGGCGCTGGCGAACGTAGAAGGGAAGCCGTGA 10265 29 100.0 32 ............................. CCTCGAGGAGGAATAGCCCCATGACCGATACC 10204 29 100.0 32 ............................. CGCCGCGACCGCGGCCGAGGAGCGATCACCAT 10143 29 100.0 31 ............................. GGCTACATGACCTATCGGGGCGACCCGTGGG 10083 29 93.1 32 TG........................... GACGGCAACAAGCCGATCCCGCTTGGAGGTAT 10022 29 100.0 32 ............................. GCGCTGGCCAGGAATCGAGTTCCGTGCACACC 9961 29 96.6 32 ............T................ CGCACGAGCGTGAGCAGCAGGTCGAGGATCGC 9900 29 96.6 32 .................A........... AGGCGATTGCTGAACCCGGCTTTGGAGGCGTA 9839 29 100.0 32 ............................. CAGCTGCGAATCAATCACCGGGTCGCCGGCCT 9778 29 96.6 32 ...A......................... TCGCCCGGATGGGCGCCCTACGGCGGCAACAA 9717 29 100.0 32 ............................. TTGTAGCCGCGCAGGGCGCGGCGGGTGACGCC 9656 29 100.0 32 ............................. TGGACCGACGGCCCAACCGAGGACGAGGTGCG 9595 29 100.0 32 ............................. GGTCTGCACGGTGAGCACCGTAGGCAGATAAC 9534 28 93.1 32 ........-.................T.. ATGTAGAAGGTGGTCGACGGCAAGGTGATTCG 9474 29 93.1 31 ..................A.......A.. CAGACCAACGCCTACCAGTCATCGGCGTCAA 9414 29 89.7 32 .....T...............G.C..... GTGTTGATGCGGATCGGCGATCCGGCCAGATC 9353 28 79.3 0 .C.........CT....T..-.......G | ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.7 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : ACTCGGCCGGGCTGTCATATCAGTAAGTCTCCGGACACGCCGGGGGGATTCACTGTCACTTTCGGATCCACGCCCGTCGATCGGTTCCGTCGGTGGCGCCTGCGAGGATGCACTGGCCGACACTGCGATCGGGCTCTACAAAACCGAAGCGATCCGGGATGATTCCCCGTTCCGGCGCGGTCTATTGACCCGGCTCGCCGTTGTCGAGTTACTCACCGTGGACTGGGTCGGCTGGTTCAACCAGTCCCGGATCATGCGCTGACTCGGTCGACCGCCGGCTGAACACGAAGCCGACTACTATGCGGTCCACGCCGGGCAACCGGCTGGAAACAGATACCCGGTGCGCATCGATCCCGGGGCGGTTCAGGTTGGATTCGGATGGCGATGCTGGTTGCGACTTGATTTGGAGGACAGTGGTGGTCTGCCGTGGCTGAGGAGGAGTTTGGGTGAAAGTGAATAAGAATCGTGTGATTGTGCGGTAAACGAGCAGGTCAATTAGT # Right flank : GGTAGATGCTCTACCTTCTGCGCCGTGGTCGGTCACAGTGCAGTTCGTGGAAAGCAGGAATCTCGGCGAATTTCGCAGGGCGCGTGTAATTGTCGGTGGAAGTGGGTATGGTCGGCAGTCGCGGATAGCGGGGGTGGCAGGCGAAAGGGGGAAAGTGGTGGTCTCACCAGCGGTGATGTCTGCGTGGGCGAAGAGCGATCGTGCCGGGGCCAGCTTGTCGTTGTTTCGGCATTCGGCCGACTCCTCGGCGGTTGCTGGCCTGGTGTGGGACCACTGGTTACCGGCCCATGTTCGGTCCCTGCTTGCTGACAGCCTGCCCGGAGGGTTGGCTGATGGGCGAATCTTGTTCTGCTGGTTGTCTGGTTTGCATGACATCGGGAAGCTGACTCCGGCGTTTGCGTGTCAGGTACCGGAGTTGTTCGACCACATGCACGGCAACGGCCTGCCGGTAACAGGAGCGCCTGTCGATCGAAAGTTGTTGCCGCACGGACTGGCCGGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 16945-16428 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWZ01000142.1 Nocardia neocaledoniensis NBRC 108232 sequence142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16944 29 100.0 32 ............................. TGCGCGGGCTCGGCATCGACGTCGAGCTGACC 16883 29 100.0 32 ............................. GGAAACCGTGCCTTGTGGGTGTCAACTGATAG 16822 29 100.0 32 ............................. AAGAACGCGGCAGTCGGCGCCGGCCTCCCGGT 16761 29 96.6 32 ............................T GTGGCCGCGGTCCTACGCGAGTTTCTGGACAA 16700 29 100.0 32 ............................. TCAGTACCCAGCTCGGCTGAGAATGACCCCTC 16639 29 100.0 32 ............................. ACCGAGTACGCCCAGGTCTGGACGCAGGACGA 16578 29 100.0 32 ............................. AGCAACTGGCCGAAGCCGTCCGTCGCATCACC 16517 29 100.0 32 ............................. AATCTCGACCTGACGCAGCTCGCCCAAGACGT 16456 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CCGCCAGGCGTCGCCGACGAGTGGC # Right flank : TGCCTGCGGTCGATCTTCGGCCCGCCAAAGGTGGGGTTCTGAGTGGCTGGTTCTGTGTCGGATCCTGAAAGCGATCCCTGGCGCATGGTGACTGGCATGGGAGGTCGTTCTGCGAGGCTCCCCAAAAAGTACCGGTCGTTAGGGTAGGTCCGCAGGGTGAGATGACGGGGCTGTTGTCGCGCGAATCGTCAGATTGCACACTATTATTCCCTTGATTGTCCAGGGCAATTAACCGACCACTCAGTTCACTATCGAGCCAGGAGCCTGCGGGTGAGAGTCAAGCCGGCTTTTTCTGAAGTTAGCCTAACGAGTTTGGTGTCTCCGAAGGTGATCGGCCTAGCGCTCAAGTCCCGATCACGGCCGCAGTGGCTCGGACAGGCGGGTGCTGTATCGGCCGCGCTATGGGCTTCTTTTGTTCTTACGATCAGTGCCGACTTGGGATTCCATCTACTTGCCACGGTCCTCGCGACGCTCATACCTGCTGTCGTTATGTGGCCCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 512-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWZ01000029.1 Nocardia neocaledoniensis NBRC 108232 sequence029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 511 29 100.0 32 ............................. GGAAAGAAGCCACCATGTTCGACGCCCTGTTC 450 29 100.0 32 ............................. CGACTTGATCCGGCCGATGTGAATGCGGCCGG 389 29 100.0 32 ............................. GGTGGCGACGGCGTCATGTTCATCATCGAGCG 328 29 100.0 32 ............................. CGATGCTGGCGCCCGAACCGGAACCGGCCCCG 267 29 100.0 32 ............................. TCGATACTGACGGAGGCGAAAACGTCTGTGTC 206 29 100.0 34 ............................. TGGAACCGCGTCGAGTGCTGGTCCTGCGGCGAGT 143 29 100.0 32 ............................. CACGTGCTCGCCGCGGTGCCGCGCGTCGACAG 82 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 8 29 100.0 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : GGTCACTCGAGGATGGTGGCGTGTTCGAGGTGGTCCGCGGCCGCGAGGTCGTGGAGGTAGTCATGCCCGGTGGCGGTTGAGGTAGAGGGTAGTTCGGGATTGAACTGTCGCGACTGAACTGTCGCGCGGTTCGTCCACGTTCATGTGGCGGCAGCGGATGGCTAGGCATGAATGCCGACCGGACCCGCTGATTCTCGACGAACGTGCGGCCGGAGGGCTTGTTTAGCGCACTGTACTTAACACCTACCTCGACACTATCGTCACCGACTTGATGGGGGCAGCGCATCATGGAGATGCTGGACACTGCAGCGCGAATCGAGGATCTTCGACTCAATGTCGCTTAGACATGGCCTTCAGAGTGGGAGGTGGACAAGGTGGTCGAGACTGGCGCAAGGACGGCAGCGGTGCGGCGACCGGGGTGTTGGTTTGACTATTGTGGTTTTGCTCGAAAAGTGAATGTAATTCTGTCGAGTGCTGTGTGAACATGCAGGTCAGTTAGT # Right flank : CCACGTCCGAGAGCAGCCGAAGCAACTTCAGGAGTGCTCCCCGCGCGAGCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55905-55445 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWZ01000023.1 Nocardia neocaledoniensis NBRC 108232 sequence023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 55904 29 100.0 32 ............................. CCATACTTTGGATTCCTGCCTCTCGGGCCAGA 55843 29 100.0 32 ............................. TACCTGGGCGTGAACTACCGCCGCGACGTGCA 55782 29 96.6 32 ............................A CAGCCACCAACGGCGATGCTTGGTGGCCGCGT 55721 29 100.0 32 ............................. AGCGGGCCCAGGGTAGGGCCGACGTTGTTGCC 55660 29 96.6 32 .............A............... GAAGAGGGATGGCTCAGCACCGGTACACAGCG 55599 29 100.0 37 ............................. CGGATTGCGATAGAGGTGGCCGACCGATCGCGGCGAG 55533 27 86.2 33 .......T..-..-...A........... GAGTCGTTCGGGGCGGCGATTCAGGCGCTGAGG 55473 29 89.7 0 ......................A...T.T | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.1 33 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CGGGTGCGTTGGCGCCGATGTGGTCGA # Right flank : TTGGGCTCATGCAACCCACACACAACAAACACACACTATTGGCCGGAATCGACGGGAACTGATGGGTGCCTGCCAGCACGTCCTTGACGCGAAGTGCATTGATTACCAATAGTATTGGGTAGCAATAGGTACGTTTGAGCTGATCGGAACCGTCGCCAGGTGGTCGCAGGTTCAAATCCTGTCAGCCCGACAGTGAAAACCCCCTCTGACCTGGGTCGGAGGGGGTTTTCTCGTCCTCGGAGATTTGACGTGGTTTGGCCAAACTTCACAGTTCGAATCTGATCAGGTGTCCAGTGCCTCGAAGCCGCGCTCCTCGGAGTGGTCGTCCGCCGTCGAGTTGGTAGGCAAAACTGCCCGCAGGGGAGTGCGCATCGACGGCGGTACCGGAGGGTGTGAACGGAACGGGTAGGCGCCCGGTGGCGGTGCCCTGGACGAGGCCATCCATCTCGGAACAGGCAGTGCGTGTAAACAGTTCTGGCCCGTGCTCGTGTGATGTGGGC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58-1306 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWZ01000369.1 Nocardia neocaledoniensis NBRC 108232 sequence369, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58 29 100.0 32 ............................. GCCTTGATCGCGTCTTTGCCGGTCTTGCCCTT 119 29 100.0 32 ............................. AGCCCCGCCGAGTATGCCGCCGAGGCGTTGGC 180 29 100.0 32 ............................. ACCGAGTCGCCGGTGATCCGTGAGCAGCTGGC 241 29 100.0 32 ............................. CTGGGTCTTGAGCAGGTCGGCAAGTACCTGGA 302 29 100.0 32 ............................. GCCTCACAGTTCGCGATTGTCCTTGCGGTGCT 363 29 100.0 32 ............................. GCGGACAGCGAGGCAGCGTCGATCGCGACGAC 424 29 100.0 32 ............................. GCCGATGTGGTGTGGCGTCTGGACGCGGCGTT 485 29 100.0 32 ............................. TACCCGGCCGCGAGCGCATCGTTCACCGGCGC 546 29 100.0 32 ............................. AACACCTACACGCCGAACCCGAACGTGGTCAG 607 29 96.6 32 ................T............ GCGTCCTGGTCGTCGGGCACGTTGAGCACCGG 668 29 100.0 32 ............................. GTGAACACCGACACCGGCCCGTACCGGGACAC 729 29 100.0 32 ............................. CGGTGGTCGTGGGTGTGCCACACCCCGTCCAC 790 29 100.0 32 ............................. CGCCAACACCCAGAACCACGCACACACCGTGA 851 29 100.0 32 ............................. ATCCCCGCGCAGGACGTGGCCTGGCGCCCGCT 912 29 100.0 32 ............................. CCGCACGTCCGCTCCCGGCGCTATGGCGGCTG 973 29 100.0 32 ............................. CCGGTGTGCGGGCACTTCTGGCCGAATCTGTG 1034 29 100.0 32 ............................. CGGAGATCGCGCCCGAGGGCGCGGAAGAGCAT 1095 29 100.0 32 ............................. CCGATTCTGATGGCCGAGCGCACCGCGATGAT 1156 29 100.0 32 ............................. GCACCGTCGCGGAATCGGTGCGCGATCACGAC 1217 29 100.0 32 ............................. CGGAACGGCAGCGTCGCGTACAGCTCCGAGAA 1278 29 96.6 0 ................G............ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : TCCCCGCGCGAGCGGGGATGAGCCCTGTCCGGCGCCGCGTACACCGCGCCCGCCGCGG # Right flank : AGGGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [16.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //