Array 1 83942-81473 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDOX01000007.1 Enterococcus cecorum strain 1711s24 1711_S24_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 83941 36 100.0 29 .................................... AGAAGAAAGTATATCGAGTGAAGATAATG 83876 36 100.0 30 .................................... ACAATACAGTTCGCTGATTAAGCAAGGACT 83810 36 100.0 30 .................................... ACCTCAAAGTATTTACATCATTTGAAATCT 83744 36 100.0 30 .................................... CAAAAATCTTTAGTTTGTTAAAAACTTTTT 83678 36 100.0 29 .................................... CAATATCTGACTATTCAGGCGTGCCTTTG 83613 36 100.0 30 .................................... AGTTACAACGGGCTGACAACGCTTCTATTT 83547 36 100.0 29 .................................... TTTTCGTTTAACACATCTTTTGCCACATT 83482 36 100.0 30 .................................... TGGTAAAATGCCCAGTTATTAATGGTTATC 83416 36 100.0 30 .................................... TACCAAATGGATCTACACCATCGCTAATCT 83350 36 100.0 30 .................................... CTTGTCTAATTGCTTCTTGACGAGATATAT 83284 36 100.0 30 .................................... CCCATTGTCTAGGCTTTAACTTAATCCGCT 83218 36 100.0 30 .................................... CCCTCTTTTCTAATTAACTTGAAATAAATC 83152 36 100.0 29 .................................... AATTATTAGGGTTTGCCAAAGGTTCAGAT 83087 36 100.0 29 .................................... ATTGCTGCAGCGATGTAAACTCCGTATTG 83022 36 100.0 30 .................................... GGTCTTTTGCGATTGTACTTTGATGGAAAT 82956 36 100.0 30 .................................... TTAAAAAGTTCAGAATTTGCTCTTCAGAAT 82890 36 100.0 29 .................................... AAACTTTTGATGCACCCACAAGCCATCTT 82825 36 100.0 30 .................................... TATCAATTGTCCACAATCCACGTTGAATGT 82759 36 100.0 30 .................................... AGTCCATGCGGAAACTATCACCGACCACAA 82693 36 100.0 30 .................................... ACATTTAATCCGCCACTAACCCAACCACTT 82627 36 100.0 30 .................................... ATGTTTATATGGCGATTCTCCTTGTGTTCC 82561 36 100.0 29 .................................... ACTCATGTCTATTTATACCCTAATCATAA 82496 36 100.0 29 .................................... ATCCAATGCTACATAAGCTTTGCGCGTAG 82431 36 100.0 30 .................................... AGCAGTGCTAAGCATTAACAATTTATTAGG 82365 36 100.0 30 .................................... ACAGAGCATGGCAATCTTCTCAATCTTATA 82299 36 100.0 30 .................................... ACTCATGTCCTATTTATACCCTAATCATAA 82233 36 100.0 29 .................................... ATCCAATGCTACATAAGCTTTGCGCGTAG 82168 36 100.0 30 .................................... AGCAGTGCTAAGCATTAACAATTTATTAGG 82102 36 100.0 30 .................................... ACAGAGCATGGCAATCTTCTCAATCTTATA 82036 36 100.0 30 .................................... AACTTTTGTGAAATGTATGAGGTATATCAC 81970 36 100.0 30 .................................... GAATATCGAAACCGTGCTATATGACGATGT 81904 36 100.0 30 .................................... TTATCCAAGATAGTGATGCAGCTAACTCTA 81838 36 100.0 30 .................................... CAGTTACTACTCCTAGCCATACGCATAACG 81772 36 100.0 30 .................................... CAGAAGTCAAGCAACTTGCCGACCGTATCT 81706 36 100.0 30 .................................... GAGGAGGTGAAGTGAATGGCAACTGAATTA 81640 36 100.0 30 .................................... AATTGTTTCTACTTTTTTGCTCATGGTTAT 81574 36 100.0 30 .................................... TTTCATCATGCTCTTTTAAATATTTAATAA 81508 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 38 36 100.0 30 GTTTGAGAATGATGTAAATCAATATGGTTACTTAAC # Left flank : GTTTATCAATGAGTTATTCAAGGAAATCAAAGATATTGTTCAATCAGGCGAGCTATACGAAAATTATGTTTTTGTGAAGTCTGAGCTGGTGAAATTAATGGAGCGGATATCAGAAAGTAATGATTATCCGCTTCAATATAGCGAAGAACTTGAAGTGAGTAGTTTATTAAAAATGATGCAAGTTAAGTTTGACTTTCAAGATACGAATTATTTTGAAAGATTAATTACATTTGTCCAATTATCCCAAAGATTACTTAGAAAAAAAATACTGATTTTTGTTAATTTATCGAGTTTTTTATCCGAAAATCAATTAGTAGAACTTGAAAAAATTGCAAAATATGAACAAATAAAAATATTGCTAATCAATAGTTATCAATTAAACTATTCTTTTTCGTATAAATGGTATATTATTGATGTAGATGGTTCTGAAATTTATTAGAATCATCGGTTAAGGGCTATATTGTTTGATGTGTGATGGCATCTTCATTTTTGAATTTGAG # Right flank : TTGCTAAATCAATATCCACTTGCATTGCCTGTTTGAGAATGATGTAAACCAACCTCCCCAAGCTGAGTGATTTTTGGGGAGGTTTGGTTGGTTGGGTTATTCTGCTAGTTTTACGATTTTGGTGCCGTGGAGTTCGTGAATGCCAAGTTGGTGGGCGATTTCTTCGGCGTTTTCGTAAGTGATTTGTCCGCCTGGTAAGATGGTGATGCGATCAGCTGCGTAGTCAATCAGTTCTTTTAAGCGTGGGAGTGTGTCTGAGATAGATTCACTCATCGGACCACCATGGGTAAGGATACGATGGACACCGTGATCAGCTAACCAGTCAATGGCTTCAAATTGGCGTTCGGCTGGGATTTCGTCAAAGGCCATGTGGAAAGTAATCTGCAAACCTTCTGCGACTTCAATCAGTTCTTCCATCGCCTCTTCGTCAATCCAGTTACTTGGAGTCAGGCAACCAAAGACCACGCCATCGACACCGAGTTTTTTTGCTTCAATCAGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAATCAATATGGTTACTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 49453-49687 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDOX01000002.1 Enterococcus cecorum strain 1711s24 1711_S24_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 49453 37 78.4 29 AT...A....T..C...A.........A......C.. GCTTATTAGGATGATTTAATAATTCGTCT 49519 37 97.3 29 ..........T.......................... ATTCAATCCTAAAGAAAAACGATACTCTT 49585 37 100.0 29 ..................................... ACATAAATTCATTAACTAACTTTTTCGAA 49651 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 93.9 29 TCTTTGAGAACCATGCTGTTTTATATGGTTCTAAATC # Left flank : AATTCACCGTTTTGAATTTTTATTTTTTCTTCCTTAGTTGCTTCTCTTAGCGTTTTTTGTTCTCCATTTTCATCAATAAAAATTGTAACCGGAGCATGGGCATATACTCCTATACCTTTTTCCCCTTTCTGAACTTGAAAACCTAATTTTTTCCATCCTTCATAACTAGCGACTGCGATAGCTCCTTTAAATTGTTCATCAATTAAAGATAGGTTTAACGGACTATAGTTGTGTATCCTAGACATAAATTTAGCAAATTCAGCCATTTCTTTCGGATCAGCTTGATATTGTTCTATTTTCTTATTAGAAAGTGCTATTAAATCGTCCAATTCTTTCTGTTTTTCTTCTTTAGACTTAGCTTTCCAATTTCCTTTGCGATACGCCATTTGAAAATCTCCTCTCAATTTTTTGACATAATACGTCACGTTTTTATTATATCAGATAGATAGAAACTATTCAAAATAAAAAAGAAGTCGTAAAAGACTTCTTTTCGGATTACT # Right flank : CCTCAAAACCAATTTTATTCACATAATCCTTCCGTCTGGTGACACAACTTGACGGAGTTAACCCTTTAGTGAGTGGCTGTACCCTCACCATTACGTTGCCAAATCAACGTTAAATATCAGTTAATCATTTATTGTAAGCTTAATAGAATTTCTCTCACATTTTCTATTTAGTTGCTCCATAAACTGATAATATGCCCATTCTCCAAGATTTTCTTTATCAATAAAATTGACCACAATATTACCACATTTATTATCGGTTGCAACTTTGACAATTCTACTAGTACATTGGTTATTGTATGTTTTTACAAAATTTCCTTCTCTTAATTTAATAGCTTCCCATCTATCATAATTGAGTTTACGTTTTCTTCCATGAGAACCTTTTGCATAAATACCTCTACTTTTTTCTCTATTTTTTATACTCTGGATTCGTTTTTTGAATCGAACAATATACGCTGTATCTCCAAATTTACATAACTCTTTATCTTCATCATTTGTTATAT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTTGAGAACCATGCTGTTTTATATGGTTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //