Array 1 40710-38810 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDZ01000023.1 Bifidobacterium longum strain APC1473 contig0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 40709 36 100.0 28 .................................... TGCATGTGCAAGTAGTTGTTGACGCTGT 40645 36 100.0 28 .................................... CCAGACGCCACGATATTGCTATGCACGT 40581 36 100.0 28 .................................... CGTGAAATCGGTCAGGAAACAGTTCAAC 40517 36 100.0 29 .................................... TGCGCAGCCAGCAACGCAACGTATCTTTG 40452 36 100.0 28 .................................... CTCAGGCATGATACTGTTTTGCATGACT 40388 36 100.0 28 .................................... ACAAGGCAAGTGTTCACACGGCCTCAGC 40324 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 40259 36 100.0 28 .................................... TGTTTACGTTCAAAAAGCACATTAGATT 40195 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 40131 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 40067 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 40003 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 39939 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 39875 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 39811 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 39746 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 39682 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 39618 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 39553 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 39489 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 39425 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 39360 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 39295 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 39230 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 39166 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 39101 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 39037 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 38973 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 38909 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 38845 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 30 36 99.5 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GAACTCACGCTTCAACCGGGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACTCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCACGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGTCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATTTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAATCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACAGGAACCACGCGCACGTCATTGGGGTTT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 455-98 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDZ01000024.1 Bifidobacterium longum strain APC1473 contig0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 454 36 100.0 28 .................................... CTGTGAATGTGATGGCGTCTCCGAATGG 390 36 100.0 28 .................................... AGTAACGCCGTAACCCTCGCAAACCCGT 326 36 100.0 28 .................................... CCGCTTGCCGGTGATGTACGAGAGCGTG 262 36 100.0 28 .................................... GTGGTCGTCGTCGGGATAAAGCCATCCA 198 36 100.0 29 .................................... GTTCATAATGCCCTCCTATAGGCTATGGG 133 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 6 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : AATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTA # Right flank : CAGGAACCACTGTTTTTAGTCAAGTCGGTGTTTCGTGTTTCGTCACTAATTTTTTTCGGTTTTCGGCATGAGGAGTGCCGGCCGGTGGTTTGTTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 203555-203899 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDZ01000024.1 Bifidobacterium longum strain APC1473 contig0024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 203555 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 203621 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [203627] 203705 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 203765 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [203813] 203813 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 203870 27 81.5 0 C.............C.....C....CG | GC,C [203887,203891] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCAATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //