Array 1 723770-726324 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG697142.2 Mitsuokella multacida DSM 20544 Scfld1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 723770 28 100.0 32 ............................ TGCCACTCGTATCATTCATTATGGTTATCATA 723830 28 100.0 32 ............................ TGCGTGACGCAAAGCAAGCATGGCAAAGCCGT 723890 28 100.0 32 ............................ TGTCACGCGTCATGACCTTGACGGCGCTGAGG 723950 28 100.0 32 ............................ GTTAAGGATGTTGTACGTCCCCTTTACCGGAT 724010 28 100.0 32 ............................ AGATGCAAGATAGGCACCCAAGGTATACCCTT 724070 28 100.0 32 ............................ TTGACCTCTGGGTAGAGCGGGATAAAAATCTC 724130 28 100.0 32 ............................ AGCGTATCGTTACAGGTAGACTACCGGAAGAC 724190 28 100.0 32 ............................ ATGTCCATGCAGATGCACCACCACGAGCCCCA 724250 28 100.0 32 ............................ ACTGCCCGTCTTTGACGGTTCCCATAATCATT 724310 28 100.0 32 ............................ ATATTCTTTTGCCGTCTCGGCGCTGGCGGCAG 724370 28 100.0 32 ............................ AGCCGCTCTCAGTCTTGCTCTGCTCTTTGATG 724430 28 100.0 32 ............................ TGCGCAAGAAGTACGAGCGGCAGGTGAACAAA 724490 28 100.0 32 ............................ TTTTCATGCTTGCGCTTCGCCTCGGCCTCTCG 724550 28 100.0 33 ............................ AAAGAAAGCGGCTACGCTTATCAGCAGGAATCC 724611 28 100.0 32 ............................ GCCATCTGAAATGCCGATATGCTTCCAAGGAT 724671 28 100.0 32 ............................ GCGAAAATCCGCAAGCTGCAGTCTGAAGGTGC 724731 28 100.0 32 ............................ GTAACAGCGAATCTTACACAATGGAGTTCGTA 724791 28 100.0 33 ............................ AGCTTAAAGGTGATCCACCAATCACCAGCCTCA 724852 28 100.0 32 ............................ TTATCTTACCAGCAATCGCGTCCGCTCTCTTG 724912 28 100.0 32 ............................ GTGAGGAGGTGACAAGTATGGATGCAAGAGAC 724972 28 100.0 32 ............................ TGCTACTGGGCAACAATGACGCCCAGAAGAAC 725032 28 100.0 32 ............................ AGAACTTCGAGTGGTATGTCGATTATCTTCTG 725092 28 100.0 32 ............................ TTGCGGGACTCGGCTGGCATCCGGACATGGAT 725152 28 100.0 32 ............................ TGCTGGCCCTGTCGGTAGAGTCGTGCATTGGC 725212 28 100.0 32 ............................ ATCTGCAGCAACTTATTGCTGAGTGCAGCCGC 725272 28 100.0 32 ............................ TGTAATGACCAGGACGGGTCCCGCAGTGGGCA 725332 28 100.0 33 ............................ AATCGTCACCCCGTAGATAGCGCAGAGCTTTTC 725393 28 100.0 32 ............................ GCGCGTCGGTTGTGCTGCCACATCCGTGCGAC 725453 28 100.0 32 ............................ TGCCAGACTTATTAAGCGGAGAGGTTGAAGAT 725513 28 100.0 32 ............................ AGATGCAGCGGCAAGGTTCATGACACCTTCGA 725573 28 100.0 33 ............................ TGTTTGATTCGTGGCCTGCATGTGCAGCGGCGG 725634 28 100.0 32 ............................ TAGCATAAAGCGGAGATGCAGGTTCGAGCCCT 725694 28 100.0 32 ............................ AGCGGTTTGAGGGCTTCGGCAAATTTATCCGC 725754 28 100.0 32 ............................ GAGCTCCGTCTCTCGTTCTTTGAGCTCTTCGA 725814 28 100.0 33 ............................ TCCTGTATAGATCCTGTCAATCCTCTATCTCAA 725875 28 100.0 32 ............................ ACCGATTGCCAACAACTACAAGCCAGAGGTGG 725935 28 100.0 33 ............................ CAGTACGTTCTCAAGAAAGTCGAGGAGGACTAC 725996 28 100.0 32 ............................ TGACGGCAATAACTCTGGCGCTGTCGGGTAGG 726056 28 100.0 32 ............................ TCGGTCATCTCGCTGTAGGCCGTGACCTTAGC 726116 28 100.0 32 ............................ GTGAGCGTTGCAATAACGAGATATTGTCATGC 726176 28 92.9 33 G..........T................ TGACAATCGTACTAAAAGCGTACTAATTGACAT 726237 28 92.9 32 G..........T................ AAGCACTACAAGTCGGCGGATGAAGTGCCAGG 726297 28 92.9 0 G..........T................ | ========== ====== ====== ====== ============================ ================================= ================== 43 28 99.5 32 CTTATCTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTTGCAGCATTTGAATCTGATTGATGCATTAAAGCATTTCACGCCAGATTACGTGAAAATCAAAAGCATCCGTCCTGTCCCTGTCAGATCATGCAAAGGCTTTGTGACGTACAGACGCTATCAGCCAGAGGCGACCGCCGCGCAGAAAGCCAGGCGCTATGCAAAACGACACAATATGTCAATAAAAGAAGCCCAGAAGCTTTTCCCAACGCCTGTAAATGAGACTCACTATCCGTATATCCAGCTGGAAAGCATGACCAATCACCATCGTTTCAGCTTGTTCATTCAGAAGAAGGAAGCGGATGAACATCCCTATGAAGGCTTTTCAGCATACGGATTCAGTAAGAGATCATCTGTTCCCGACTTTTGACCAAAGTTTTCGCCGTATGTCAGAACCCTATGTAAATCAAGGGCTTTGACAAGAGCACAAAATTTTGGTTAAATGAGAGTAGCTAGCGAGAACCAAAGCAGGACAAGGATAGTTGCACAGAGATTTACT # Right flank : ATGTGCGGTGAAGCCGTCTGCGATGTAGTGCAGGACCTCTTCCATATCTACATCATCTGTCCCTTTCTGGTATAATAGGCATATAGACATAGTCACCAGCATGGAGGCGTTGTATCATGAGTGGACACAGCCGAAAGTACAAGATCATGTTGACGAACGAGGAACGCAATCATCTGAAAGCGGTCTTGCGCTCGAGCAAGACGTGCAACACCATCAAGAAGCGCTGCCAGATTTTGCTGGCACTGGACTGCAACACGAATCCTGACAGCACGTATCGCAACTGTGCGTATTACCTCGGCGTGTCGTTGAAGATGGTCTGCAATATCGTCAAGCTTTACTGCGAGAGCGGGCTTCAGCGCACGCTGGTCTTGAATCGCAATGTGAATTCGGACAATGCCACGCGCAAGATTGACGGTGCCATGGAGGCCAGGATCATTGCCATGGCCTGTGGCACCCCGCCTGAAGGATATGCCAGATGGACCATTAAGCTCCTCACAGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 727627-728134 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG697142.2 Mitsuokella multacida DSM 20544 Scfld1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 727627 28 100.0 32 ............................ AGCGCAATTCGAAGCTGGGTAAGAAGGCTGAC 727687 28 96.4 32 .................T.......... TTGATGTCACACTTCACGAACCTCGAGGAGTC 727747 28 100.0 32 ............................ GTGTCAAGATTATCCCAGGTCTGTTCCCGTAC 727807 28 96.4 32 ...........C................ TGCTGCAGGTCATAGTTGCTTGGCCGGTCCTG 727867 28 96.4 32 ...........C................ TTATTGAATGCACGATTCAGCAGCTTCTTTTC 727927 28 100.0 32 ............................ GCCTTGAGCAGCTGGCAGAGGAGAAGGAAGGT 727987 28 100.0 32 ............................ AGTGGGAGGGCTTGGAACGACGAACGGTTCCA 728047 28 100.0 32 ............................ GTCTCATCCGCCGCCGTAAAGCGCGCAAACGA 728107 28 92.9 0 C..........C................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTATCTGCCGTATAGGCAGCTTAGAAA # Left flank : CATTTTTGCCATTGTAGAGCCGCTTACGGGGCACCAGCATATCTCGGTGCGGGAGCGGCGGACCGCTCTGGACTGGGCTGAAGAAATCCGATATCTATGTGATGTCATGTACCCACGTGCCGAACGGATTGTCCTGGTCATGGATAATCTGAACACACATACGCTCGGCTCACTTTACAAACGGTTCAAGCCAGATGAGGCCCGCCGACTGGCGGAGCGTTTGGAAATACACCATACGCCGAAGCATGGCAGCTGGTTGAACATGGCCGAGATCGAGCTGAATGTATTGACCAGGCAATGCCTCAACCGACGAATCGAAAGCCTTGCCAAGTTGCAACGTGAAGTCCGTGCGTGGGAAAATAAGCGGAACAAGAAGCCGACACCGATTCATTGGCTGTTCACTAAGGAAAAAGCCAGAGTCAAGCTGGTATCTTTGTATCCTGATTTAACCAGATGACTAATTGCTATATATATGGAAGAGGTTCTACAGTAGTTGTTCT # Right flank : AGTGGCGGTAGCAAACATGATTGCACGCCACAACTTATCTGCCGCATAGATGGGTAAATCCTAAATTGTCCAGTGTATGATTCGCCAGTTTGATGGCCAACTTGGAGATGTGCATCCCAAAAGCTCCATTACATGAGCAGTGAAGCTTTGATGGTTTATTTTTATTTTTCTGGATGGTCTCGCTCTATGATAGGAAGCCGATGCGCTGGATGTCGGCGTTCGGCAAATACTCAAAGAGGTGCTTGAGGTACTGAAATGGGTTTAAGCCGTTGGTCCTGGCTGTCTTGACGACATAGAAAAATAGCCAGCTCCGTCAGTATACTGGATATACCGGCGGAGCTGGCTGCCCTTTCTCTGCGAAAGGGGGATGCAAATAGTTGAAAAGCCGTTGTTTTTAACTGTAAATTGAAGGAGCAACCGGCGATACGACCCGCCGGTTTTCCTATGCTTTGATTGTATCATAAGAGACATGCGCTTGCAAGCGAATCAGGCGTAGTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTATCTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //