Array 1 36659-37149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLCJ010000002.1 Lactiplantibacillus pentosus strain O17 NODE_2_length_465820_cov_290.475105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 36659 36 100.0 30 .................................... AGACATGCAAATTATGTTCGTAACGTCCTA 36725 36 100.0 30 .................................... TAAGCAAGACGATCACTGGGAGTTATCACC 36791 36 100.0 30 .................................... CGCGCCCGTCGTTCCTGCCTTAATTCATCT 36857 36 100.0 30 .................................... CGATGGTATGTATTACGAGCTTACCTATTC 36923 36 97.2 30 ...................C................ CGCGTCTATCGCGTGGTTGTTCGCGTCTTT 36989 36 100.0 28 .................................... AATTCAAAAAAAAGAGCCATCCAAATCG 37053 36 94.4 25 .......................G..A......... AGGATCGTTTCGACCTGTCATCCGG 37114 36 72.2 0 ....C.G.C...G.....T.T..G...T.G.....T | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 95.5 29 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCCGTCTTGGATCAAAGCCGGGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGACTAGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAACTAGGACTCAAGCAATGCCCTGTGATGACCAATGTCAGCCATTATTTGAACCCGGAACAATGGGCCGCTTTTGAACAGCAAGTGGCAGATTTAGGCACCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : TAACCCCCGTGTTACCGTACATCTTGAATAGTAGTCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATAATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAGGAAGGAA # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1465-1131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLCJ010000014.1 Lactiplantibacillus pentosus strain O17 NODE_14_length_72373_cov_212.706664, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1464 28 100.0 33 ............................ CGAATAACAATCCCGCGCCAAAAAGGAACGCTC 1403 28 100.0 33 ............................ TTGTTACCCGCCCGATACCGGTCAACATATTTT 1342 28 100.0 33 ............................ TGTTGTCGGCGGATGTTCCGCCGATTCGTGCAT 1281 28 100.0 33 ............................ TTACATTGGACTTCGCATCGTTGGTCTTGTCAT 1220 28 92.9 34 ..........C......A.......... CCTATTTCCACAATCAAATTCATCTACTAGATGA 1158 28 92.9 0 ..........C....T............ | ========== ====== ====== ====== ============================ ================================== ================== 6 28 97.6 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TCGCTTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACTCGAACAGACATTGAATTTTTGGCAAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGATGATTTTATAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTTGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTAATGTAAAAACTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAAGTAAAACATAAAACATTATTATCTTAGACCACTTAAATCTGCTTAAATCTGCGCAGGTGTCCTACAACAAATCAGCTGGTTCCGGTTAAAATTAATGTTCATGCAGCAACCACCCCTCTCCAACACACACAGAATATTCAGAAAGTACGGCTCTTGTCGTCCCCACCGCTCACAGTCATTCGCAAGCTCGGCGCAAGGTAAATTAAATTAGAATCTAGAGCAAAAAAAGCCGCCATATCCGAAGATATGACGACTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCTTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 224254-224830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLCJ010000004.1 Lactiplantibacillus pentosus strain O17 NODE_4_length_380846_cov_189.743490, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 224254 28 100.0 33 ............................ TGGATATTGGATTGCTACTGGTACTAGCGGCGA 224315 28 100.0 33 ............................ TTGTGCTAGCACGCAATTAATTAGTAGGTCTAA 224376 28 96.4 33 ..........................T. CTGCGTTGCCATTTTGGTGAAGTTTGCACTATT 224437 28 100.0 33 ............................ TCAAAATGCCTCAGCCACGGGCGGGAAATACTC 224498 28 96.4 33 ..A......................... TACTTGCTGTATTCAGACGTTTGCGCGTTCACA 224559 28 96.4 33 .................A.......... CAAAGTCGCTGATCGGTATGATACCAAAGCACT 224620 28 100.0 33 ............................ CGGGAGAACAAGCTTGGTATTACAAGAACATCG 224681 28 92.9 33 ..A............A............ TTAATGATGCGATATACGGGCAGCTTCACATTC 224742 28 89.3 33 ........T.......T.A......... TTAGTGACCGATTGACATTCCTATATTTGGAAC 224803 27 82.1 0 ..A............A......A.-..T | C [224825] ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.3 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCACACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATTGATTTTTTAGAATTCTGGAGATAGGTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGCTGATTTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TTGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCGGCATTTATACAGAGCGATGAACAGCATTATTTCATCAACAGGGCAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTCCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTATTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTTTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGGTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCAT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227449-228496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLCJ010000004.1 Lactiplantibacillus pentosus strain O17 NODE_4_length_380846_cov_189.743490, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 227449 28 100.0 33 ............................ TGGTTACGATGATTTTATTACGAAATTAACGGC 227510 28 100.0 33 ............................ CGAATCGCGTCATGCATTTGACTAACTACGATA 227571 28 100.0 33 ............................ CATTCTTAAACAAATAACCGTTAGGAACTGCTT 227632 28 100.0 33 ............................ TAACGTCGGTGTCGACAAAGCTGAACGCTTGAC 227693 28 100.0 33 ............................ CACGAACAACCAGCCGCAGTATGACCCTGAGGA 227754 28 100.0 34 ............................ CTTTTTGGCAAAACAAAAACCCACCATATCAATG 227816 28 100.0 33 ............................ CATGTGGTTGGCTGTCTCAAAAGATAAGTATTT 227877 28 100.0 33 ............................ TGTTCGAAACGGCATGAGTTTGACTGGATTAGG 227938 28 100.0 33 ............................ TAAGGGCTTAACGGGTTTTGCAGATTCTCAATC 227999 28 100.0 33 ............................ CAAGGAGCGCATGGAGTGGATAAAGTTTTTTAC 228060 27 92.9 137 ..A..............-.......... TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAACAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 228224 28 85.7 33 ..A.......T.C..A............ TCAGCTTCAGCGATTAGTGATTCAGAAGATTTG 228285 28 85.7 33 ..A.......T.C..A............ CAACAAGCCCTAATAACACAAGTACCCGGTTCG 228346 28 85.7 33 ..A.......T.C..A............ CTCGGTACCATCCGTTACATCAATGACGACAGG 228407 28 85.7 34 ..A.......T.C..A............ CCTCTAATTCATTGTTTACAATCAGCCACTCATA 228469 28 85.7 0 ..A.......T...............TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 16 28 95.1 40 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTTGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAGGCTTCACAATTATTAAGCGCTTACATTTTATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGAGATCATCGACTTTCATCCGTATATTTTCGTCAGAACCCTAAACTGCTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAGTGTTTGAATATACATCTATTTTCGGAAGGACTTTGATGGATTTTTGATAAATTATGACGACTAGTTTGTGTCAAGACAGTCTGATATGTCCAGTCTTGGAGTTTCCCTATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TTTATACAGTTTTTAGGAGGACAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATATCCCGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTGAAAATTAGCAGAATTATCTGGGAAAACTCAGTTTTTGATACAGCAAAAATGCGCGTGTTTACAACATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATAGAGAAGAACATTCTGAATTTATTTTTGTAAATTCACGGCAAACTTTGAATAAAGTAAAGGTTGTACCGTATTTAGAGAAAGTACTGTTGCAGTTTCTATAGATTAGGGAGGGTTGTACGGTGATAACTATACTTGAATACGCATAGAAAGAATTTATA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTATTCCCCGTGCATACGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //