Array 1 8159-13166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXFK01000278.1 Xanthomonas oryzae pv. oryzae strain DXO-331 contig_278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8159 31 100.0 35 ............................... TCTCCAATTGCAGTCTCGATCCCCACAACCCGAAG 8225 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 8292 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 8357 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 8423 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 8487 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 8551 31 100.0 35 ............................... TGGATGTTCGTAGAGTACCCCGAACCGACGCTTAT 8617 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 8682 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 8746 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 8811 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 8875 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 8939 31 100.0 34 ............................... TTTCCAAAGACCCATAGAGTTCAGGTGTGCCGCT 9004 31 100.0 35 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGCA 9070 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 9135 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 9199 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 9266 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 9330 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 9397 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 9462 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 9528 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 9593 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 9657 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 9723 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 9788 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 9853 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 9920 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 9988 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 10053 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 10118 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 10184 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 10249 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 10316 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 10383 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 10448 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 10515 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 10580 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 10645 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 10710 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 10776 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 10841 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 10905 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 10970 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 11035 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 11101 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 11167 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 11234 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 11299 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 11365 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 11430 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 11495 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 11562 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 11628 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 11693 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 11760 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 11826 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 11892 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 11959 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 12025 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 12090 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 12154 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 12219 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 12284 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 12350 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 12416 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 12481 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 12546 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 12612 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 12678 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 12742 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 12809 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 12874 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 12939 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 13006 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 13071 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 13136 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 77 31 100.0 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCACGCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //