Array 1 56678-58149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEE010000018.1 Alkaliphilus hydrothermalis strain DSM 25890 Ga0454045_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 56678 30 100.0 36 .............................. TTATTTAAAATTAACTGCTATAATTACAATGTTAAT 56744 30 100.0 37 .............................. AAGTAAAGGAAAGTAAAAGAAAAGAAATAAAAGGAAA 56811 30 100.0 36 .............................. TATATACACCCCAGTTTCTTTTTTATAAGAACTTTA 56877 30 100.0 35 .............................. AAGGGAACTATATACCAATTAACGGAGATTTACGG 56942 30 100.0 34 .............................. GTTTTAACCCCGAAGGGTTCCCTAAGTTTCTTCC 57006 30 100.0 35 .............................. TTAATATCCCTAGACCCAAAGAGGATTTAGAATAA 57071 30 100.0 35 .............................. GCAAGGCAAGGCAGCTGATATTCAGATTCAGGGAA 57136 30 100.0 36 .............................. TAAAACAAGTGAGTGTTACTTGTTCAGGGAAACCTA 57202 30 100.0 35 .............................. GCAAAAGATAGCTTACATATGCAAGACAAGGCGGC 57267 30 100.0 36 .............................. TAATTGCCTATTCCCCATTCAACATATACTATATCT 57333 30 100.0 35 .............................. ATACAGATTCAGAACAAAGGTAAAGTAACTGTAGG 57398 30 100.0 36 .............................. ATTTGATGAAGATGAACCATTAGAGGTGTATAGATG 57464 30 100.0 35 .............................. GGACATCAAAGAAAGGAAGCTCGCCATGTAGCAAA 57529 30 100.0 36 .............................. GGTAGATTCCTTAAGGGAGGTTGGGGTGATGATTTT 57595 30 100.0 36 .............................. TTAAACTAAAATTAGTTACTGTTTCTTTATGTTCTG 57661 30 100.0 36 .............................. TTTCCACCTCTTTTCTCCGCATTCTCTGAGTATGTT 57727 30 100.0 36 .............................. TAAGACCCTCCCCTCACCCTCCCGTAAGAGAAACAT 57793 30 100.0 36 .............................. TGTTGTATAGCATCTTTAACTATGTTTTCCAAATAA 57859 30 100.0 35 .............................. GATAATGAGGTTATATTAGACGATAAGATTTTCAT 57924 30 100.0 36 .............................. CATTGATAATTCAATAGATTTAGAAGTTAAAGGCTA 57990 30 100.0 34 .............................. TCTTTTAGGCTCTCTATAGACATAGTATTTTCTT 58054 30 100.0 36 .............................. ACATTATTTTCAATGCGTTTTAATAAATACTTTAAT 58120 30 90.0 0 ..........................GG.T | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 99.6 36 ATTTAAATACATCCTATGTTGAGGTTCAAG # Left flank : GCCGATGGAGGAATCTTGTCTAGGAACTGTATTTGATAGATTCCCAGTCTTAATAGGTTCAAGGTATTGGCATTGATTTTCTTTAGTTTGATTGATGAAAACTGTTGTATCACATGATCTATGTAAATAGCGTTTTCTAACACTCCATATACTAGCTCTGTCATAAAACCTTTATCTAGCTGACTATATTCTTTTCCGTCTAATTCTTTATTTAGGGCTAGGTTTGAATAGGCTTTGTTTACTTCTACATCATATAGAACTCTTAGTGCTCCTTCTCGTGCATTCATTTTTTAACGCACCTCCCGTTTATAAGTATAACAAATAGTATTAAGTAAAGAAATGTCGAATTTATACTTGTTTTTATTATAGCCTATTTTGGGGATTTTTTTGCGTTTGGGTGAGGGCATATTAGAAGAGGCATAAGAAATAAAAAAACTCTGGGCCCCGTAGGTAACCAGAGTAAGGGATTTCAATACCCTTTTGCATGATGGAAAGATCCT # Right flank : TGTCAACACTAAATTAGACAGATTTTATAAGGTTATGCTCTTTAAATTGCTTAGGGCTTAAATAGCCTAGTGTTGAATGTATTCTAAATTTATTAAACCAATTAACATAATCAGCTAGCTGTAACTCTAGTTCTTCTAAAGTCTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTGAGGTTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 27935-29559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEE010000017.1 Alkaliphilus hydrothermalis strain DSM 25890 Ga0454045_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================================== ================== 27935 36 100.0 30 .................................... CGTCCACAAACTTAGCCCATGCACCTTGCA 28001 36 100.0 30 .................................... TGGTATCAACATTATTTCTCTCACTCGGTT 28067 36 100.0 30 .................................... GTAGTTAAAGACTATGCAACTATAAATAAT 28133 36 100.0 30 .................................... AATCATTGTATCATATATTATTCTATAATG 28199 36 100.0 30 .................................... TTAAAGGCTACTGAGCCCATTTTATAGGTT 28265 36 100.0 30 .................................... TATCACACAATTCACTAAGAAAAAACTTGG 28331 36 100.0 30 .................................... TCTATCTTGCCCTCTTTCCCCTTTGTGTTT 28397 36 100.0 30 .................................... TAATAACTCTTTTTGCTTCCTGCTCAGCCT 28463 36 100.0 30 .................................... TGGATGCCCTTGGACAACTTAGCATTGATG 28529 36 100.0 28 .................................... AGGTAACTGAATATGCTTTGCTATCTCA 28593 36 100.0 30 .................................... ACTCTCGGCTACATTCTTAATTAAGCTGAA 28659 36 100.0 30 .................................... GATTAAGTCTGCTACGTCTGGCATATTAGA 28725 36 100.0 30 .................................... AGAGGAAGAAGTACTTAAAAGAATGAAGGA 28791 36 97.2 30 ..................C................. AAGATAATAGTGCAGTGTTAGTTGCTGGGA 28857 36 100.0 30 .................................... CTAATAAAGGAAGGTGACTCAACTGGTTAA 28923 36 100.0 30 .................................... GCGCAGGCTGCCTTAGTTTGGCCTAAGAAA 28989 36 97.2 30 ....................C............... GCTTTTGTTGCTATTGATATTATATTCATT 29055 36 100.0 30 .................................... AGGGAGGTGGTGTTCATGGTAACAGAGCAA 29121 36 100.0 30 .................................... TTCTATGCTGCTATGGCCTAACATTTCTTT 29187 36 100.0 30 .................................... TAATATTAGTGTAGCAATAATTAAAAAAAA 29253 36 100.0 30 .................................... TCTTTGGTGTATAGGGAAAGTGAGCAAAGG 29319 36 97.2 30 ...................................T TCCTCCATCACATTTGAATTGCTTTTTATA 29385 36 100.0 102 .................................... TCCAATATAACTCTACCTCCTTTCGACGATAAGTCGGAATAATTAAAATATTAATAGGAAAATAATTGACATCTGTTTAAATCTATGATAACCTGTATATAC 29523 36 88.9 0 .....G..............A.....TA........ | C [29542] ========== ====== ====== ====== ==================================== ====================================================================================================== ================== 24 36 99.2 33 ATTATAGCATGTCAGAAGGTTTAAGGATACTATAAC # Left flank : GGAAAAAGCAAAAAATATTAAGGTCGATTGATATGATGATTTCCTCTTTTGTTAGTGCTTGTAATAATATGAATTTCGAGAGTTTAAAATTACCAGAGCTTATTCCTCTGGAACTCCATAGTTATGAGTAAGTTTATGCGAATACTAGTATTGTTTGATCTGCCTACAAAAGAGGAAAAGGAACGAAAGGAATACCAAAGGTTCAGAAAGTTTTTAATTGAGGATGGTTATGATATGATGCAATACTCAATCTATATGAGGATTTGCAATGGATTAGACTCTGTGGATAAGCATATAAAAAGATTAAAATGTAATCTACCACCAAGAGGGGCTATAAGATGCTTAACCATAACTGAAAAGCAATTTGCCAGCATGTTGTTACTGTTAGGTAAACCATCAAAAAAAGAAGAGAAAATTAGAGTTGAACAGCTAAGTTTGTTCTAAATTTCAAGAATAAAACCCTTGAAACATTTGATATTTCAAGGGTTTTGCCTTGTGCT # Right flank : CAAAAAAGTAACGTAAGGTATCCCCTATCCAACAGATAGGGGTATCCTTTTTTTTTGCCCCTTCAGTCACCCCACACTTCTCAACCATCTTTCCCCAGTAGCCTTGATCCCAATCGCCCCTAAGGGTGCAGTCACCAATATAGAAAGGACAGCGATTGCCAAAATCACTTCACCAGATTGCACCCCCATAGCCAGCGGTACAGCTCCAATGGCGGCTTGAACAGTGGCTTTAGGAATATAAGAAATTACACAAAAAAGCCGCTCCTTCCTGTTGAGATTTGTACCAGCAAGGGAAATCAGTACCCCGATACTCCTAGCCACTAGACCAATTGTGATAATGATTATGCCGACAAAACCTGAATCAATGGCCACATAAATATTCACCTCTGCCCCCACCAGTACAAACAACATGATTTGAGCAAATACCCAAATCTTATTAAACTTACTACCCACCCGTGGGGCAACCTCAGGATATTTCTCCATTAGAACAAAACCGATGG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAGCATGTCAGAAGGTTTAAGGATACTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 112-1506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEE010000005.1 Alkaliphilus hydrothermalis strain DSM 25890 Ga0454045_05, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 112 30 100.0 36 .............................. TGGCGTATCCTTACCAATTATTAGTGGGGATTTCAC 178 30 100.0 35 .............................. ACGCAATCGGTTGGCATATGCCTAGTAGGTCACTT 243 30 100.0 34 .............................. AAGTAGTTACGATGCTGATAGTAGCAGATCTTTA 307 30 100.0 36 .............................. GTCTTAGCAGCTGCTTCTGCTCCGTCAGCTTTCGAT 373 30 100.0 36 .............................. TAAAGGATTTATGAAGATTATGGCAGGTGACGAACA 439 30 100.0 35 .............................. CAACAGAGTGTCTCTAACTTCATTGCTATGCTTAA 504 30 100.0 35 .............................. TTATTTTTTGGATATAATATATCTGAGGTGATGAT 569 30 100.0 36 .............................. CATCTATATGAGGTCGTCATCGTCTGTTGGTTCTCG 635 30 100.0 35 .............................. AGAAACGTTGCCTATAGTTGGATTAGGTGGTGGGA 700 30 100.0 33 .............................. ATGGCTTGTATAACATAGGAAGGATGATGTAGA 763 30 100.0 36 .............................. ATTAGAGACCTTTAGGAGACTTGATATGCTAGAGCA 829 30 100.0 34 .............................. ATGATAGTATCATAATTAACTCTAACAGAAAGGA 893 30 100.0 34 .............................. AGAAAATTTACATATAAAACGTCTACGGGAACTG 957 30 100.0 34 .............................. AAGATTAGTTTAACTATTTGAGCCTGATCCTCAT 1021 30 100.0 34 .............................. ATTATGATGCCCCAGAAGGATTTTAAGGACCCAA 1085 30 100.0 34 .............................. GATAAGGGAGGTTTTTAATAATGCTTAGTACATC 1149 30 100.0 36 .............................. CAATATGCTAGGGATTATAAGAGATATAGAACCAAA 1215 30 100.0 37 .............................. CCAAAATCGTAGGAGGTCCACAAGGTGCAGGTAAAAG 1282 30 100.0 35 .............................. TAAGGTAGTGGAATTTAAAAGTAATATCTAGCTTA 1347 30 100.0 36 .............................. GCAACAGAGTGTCTCTAACTTCATTGCTATGCTTAA 1413 30 100.0 34 .............................. ATAAATACAGCCTTGCCTTCATTCATGTAGTCAG 1477 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 100.0 35 ATTTAAATACATCCTATGTTGAGGTTCAAG # Left flank : TATTTTAGTAAGTTAAAACATTAAGGCGGTGAAACTGGAAAAATCTCAGGAAAATTATTTGCCAAAATTTCGCCAAAAACACTTGCCAGTTACAACAATTCGCTATGAGGTA # Right flank : GCACTGCAAACAAGCCATTCTTGTTTTGATAAGTTGGTTCAATCATATTGCAAAATCAATAATGTTCTAGTTTTTTACCAAGAGAAAATTAAGATTTAAAAATCAAATTCAAAAACATTTCGAACCATTGTAATCACTTAACTTTGCTTAATTTCACGAAAGAAATAGCCTGGTAATTTTAGGTGCTCCAATCAAATAATCAAGTCTTCTCCTGTATCATTTTGCTTATTTCCCAAAACCTCTTCTCCGAATACATTATTGTTCAACAATTTTATTATACAGACAAAATCCTCCTGCTGATCAATAATTTTATTCAAATCTTTTTTTAGTAGTATTAGATTTGAGGGAGTAATCTCGCCCCTAAAGACAGATTTTTGAAAATGAGATAGATACTTTTTGCATATTTTAAAAACTTTATTTACCCTTTCTACTTTAACATCATAAAAAAGAAAAGCATAGTTATAATTTAAATTTTTCTTCATCTAAATTTTCTCCTTCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTGAGGTTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 138-2124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEE010000044.1 Alkaliphilus hydrothermalis strain DSM 25890 Ga0454045_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 138 30 100.0 36 .............................. GGGGTAGTCCACGATTCGCCCTGTTCCTTTAAACCT 204 30 100.0 35 .............................. AAAATCTTATGCAGCAGTAATGATTATGAACAGGC 269 30 100.0 36 .............................. TATCTCCCCCTTTATTTTTGTATAAAGTAGGCATCA 335 30 100.0 36 .............................. TGTTCTTTGGTTCTTCCTTTACTTCTTCTGGTTCGG 401 30 100.0 37 .............................. GTATCAATATTTTAAAGAGCTAAAGCCTTATTTTGGG 468 30 100.0 36 .............................. AGTGGAGCTCCATAAACTATGTAAACATTTTTCTTA 534 30 100.0 35 .............................. CGAGTTACTTGGCCATGAAACTCTACAACAGAGTT 599 30 100.0 35 .............................. CTCTGTTCTTCTATCTCATCCACATACATACTTCC 664 30 100.0 34 .............................. TACTCTAAAAACATTATCCATCACTTGATTAGAA 728 30 100.0 35 .............................. AACTTGGCACCTCCTCTGGTAAAATAAAAAGACCA 793 30 100.0 36 .............................. GGGATTTTTCCACTTACTTTCTCATCATATTCAATA 859 30 100.0 34 .............................. TATTGAGGATTGGCTTGAATAATTAGATGGGCTT 923 30 100.0 36 .............................. TAGAAAACTTCATCGGTCAAATAAATTTAGAATGGT 989 30 100.0 34 .............................. TAAATAGCGGTCAAGCACAGGAAGAATGGGTAAT 1053 30 100.0 36 .............................. AAGTATAGAAACTGTACCTTTAATAAACACAGCATG 1119 30 100.0 36 .............................. CATGGTAAAAGATTGCTACTCTTCATATGTCGAATC 1185 30 100.0 35 .............................. GGGTTAAACCTTGTAAAATGTGAATACTGGAACAA 1250 30 100.0 36 .............................. TAGATACATCATCTATAGATACTTTTTTTAATACTT 1316 30 100.0 35 .............................. AAGCTGACACAGCCTGAGTTGATACCATTGCTAAC 1381 30 100.0 32 .............................. TGATACACCTGCCAAACATGCAATAATACCTG 1443 30 100.0 34 .............................. CGAAGTGGGTATACGAGTTGTTCCTCCATCAATT 1507 30 100.0 35 .............................. GAGATTTGCTGCATTAACAGGTGTACCCTCTTGGA 1572 30 96.7 36 ..................A........... ATTTTCGTCACACCTGAATACCCTTTTGTTATCTGC 1638 30 100.0 35 .............................. CATGAGTAAATTACCAAAAGAATTAAAGGAAGCAC 1703 30 100.0 35 .............................. GCCACTTCTCCAACATCTTAACTCTAAGCTCTCCT 1768 30 100.0 34 .............................. GGGCTATAGCTCAAAAGATTATAGATTATATTCC 1832 30 100.0 34 .............................. TTATCTACATTGATAATGCGGTATTTTTATTCTT 1896 30 100.0 38 .............................. GTTAAATAGATTATTTAAATTTGCACCAAATGATCTAA 1964 30 100.0 36 .............................. TGGTATACCTATAGGTCTATACTCAACTCAAAAATC 2030 30 100.0 35 .............................. GAAGATGCAAATGCCATTGAAGAAAATATAACTCA 2095 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 31 30 99.9 35 ATTTAAATACATCCTATGTTGAGGTTCAAG # Left flank : TCTCTTTTAGTCATATAAACAGATCTCCTTTTAATTATATTAATTAAAGTTTACATGACCTTATTTTTGTTGTCCAGTCTATTGTATCCTATCCAGGTTCAAGCAAAACCAAACCCCACATATACTTCAGAATGATCA # Right flank : AAGAGTACAGAAACAAACAATTGTAAATGGTAAAATAAAATGGAGAGATTTTGGCAAACAAAAACGGAGAATAATTTCCAATATAGTACAATAAGAATACTCCTTCTGATAGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTGAGGTTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 266-2938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEE010000022.1 Alkaliphilus hydrothermalis strain DSM 25890 Ga0454045_22, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 266 30 100.0 36 .............................. CCTTTAAGAGCAGATTTTACAAATGCAATACCTTTA 332 30 100.0 35 .............................. GTGGTCAATAATGCCACGTCCTAAATCAGTCACTA 397 30 100.0 35 .............................. CGTCGTAAACCACAGGCAATGGCCAACAATATTAC 462 30 100.0 36 .............................. TGACTCTAGAACATGTGAAGATAATATGGGTATACG 528 30 100.0 37 .............................. ATATTATTGATGAGTTAGAAGGACTTGATATTAATGC 595 30 100.0 37 .............................. TACCTCAGACGAACAAATTGAAGAAGAATATAAAGAA 662 30 100.0 37 .............................. TATCAGATAAAGTATTCTCTGTCTTCCAAGTAGCTAC 729 30 100.0 35 .............................. GTTCTGGAGCTATTCTAACAATATCTTCTTTAGAT 794 30 100.0 35 .............................. GTAATATTGTTGGCCATTGCCTGTGGTTTACGACG 859 30 100.0 36 .............................. TTGATTTCCATAATTAATTACATTTAAGCTATGCCA 925 30 100.0 37 .............................. TGAATGAAGGGGGTTCTGGGGCACAACCTGTTACCTC 992 30 100.0 36 .............................. AGATGGGACTCTACACACAACCAAGGCACAGCGAAC 1058 30 100.0 37 .............................. ATATTGATTGCATTTATTGCTACGTCTACCTCTTCAG 1125 30 100.0 37 .............................. CTGAAGTAAAACAAGCTGAAGCCAATGCCCTAGAGGG 1192 30 100.0 37 .............................. GGTGATACGCCATTGCTTAGAGTGGATTTTTTAAATA 1259 30 100.0 36 .............................. TTAATCATTAACGCTCACCTCACCTGTTAAAATCCC 1325 30 100.0 35 .............................. CTAAAAATTGATTGTTGCAATAATCCTTTATCCAT 1390 30 100.0 36 .............................. TTGAAGTAAAGGGGGAGTAGTATGGGTGCTAAAAGT 1456 30 100.0 35 .............................. CCATGATGACATTCTTCACTTACAAAAAATCTAAT 1521 30 100.0 35 .............................. ATAGTGATCAAGCTATCTTAGATTTTCTTAAGACT 1586 30 100.0 36 .............................. ATTGATCAGGAAATAAGAAAGGTGGGGTTGAAGTAA 1652 30 100.0 36 .............................. GAAGTGATCAATAAATTTTACATACTTGGAAAACAA 1718 30 100.0 36 .............................. TAACGGCAATACTAAATGTCGCAACAGCCTTTCCAC 1784 30 100.0 37 .............................. CCCAAAATGTTAGAATATCAGAAAAGTATAGTAACGA 1851 30 100.0 36 .............................. GAGCTACTGAATCACCTTCATGACTTACTAGAGCAT 1917 30 100.0 37 .............................. TAAGTAGAGTTCTAATATTTCCGTTTTGGACAATTTT 1984 30 100.0 35 .............................. ATACTTAATAAAATTAATCAAAAGGAGAATTGAAA 2049 30 100.0 37 .............................. TCAAAGATCTCAGGGTTAATGCCCATTGTTCTGTTGT 2116 30 100.0 35 .............................. AACGCCCAGTACGGGCTAGCTGCATCATATTATCC 2181 30 100.0 37 .............................. TTAGACCACCTCCAGAGTAGTCGGACTTGATTTAAAA 2248 30 100.0 36 .............................. CGGATGATGGAGTTAGTCCAGGGCGACTTAGAGCAG 2314 30 100.0 36 .............................. TTGCTGCTTTCATAAGTTTCCTCCTTATTTATCTAA 2380 30 100.0 37 .............................. GGTCCTCATACAGGTGAATATGAATTTGGTAAAGATA 2447 30 100.0 36 .............................. TTAACTCTCAGTGTCTGAAGCTTATCTATTAGCTCT 2513 30 100.0 37 .............................. TTGAGTCGTACCATATGTCCCCATTCACAGGGGCTGA 2580 30 100.0 36 .............................. GGTACCGTAGGACTGCTAGGGGACGGCGTAACAGAC 2646 30 100.0 37 .............................. CACAATTTAAAAAACGAAAAACAAGAGGTTTATTAGA 2713 30 100.0 35 .............................. TGACCAGATGGATTTACGGCATTTACACTTTCCCC 2778 30 100.0 35 .............................. TGAGCTTGTAGTAACCCGCTCACTTGCGCTTCGCT 2843 30 100.0 36 .............................. TCCACTACTTTGTTAAGATTGTTCTTATCTACACAT 2909 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 41 30 100.0 36 ATTTACATTCTACTCTAGTTCTATTAAGGG # Left flank : ACAATCCAGTAGAGCAGGCAACAACTAACCTCTACTGGATTTATTGTATCAACTATTGGATTTAGTTTCTATACGTCGATTCTTTGGCGGTTACAACACGACTACCGGGATCAAACTTTAAAACAAATCTAAAAACACTGGATCTGATGTTACCATGGGATTCGTTAGTTCAGCAAATATGCAAAAACAATTAAGGGGATGACAAATGTCATCCCTAAAATTTTGCAACCCATCAAATATTGGACGCTTACATTATTTAGGATAAA # Right flank : GGCGTTTTAACCAAAATATTTAAATTACTTAAGTGTATAGCCTATTTCTGTCTACCTATCATTTTATTATGTATTTAGGGTCTAATTTCCATTGTTACTTAGCAGTAGTTATCTCGCATGCTGATAAAATAGCCGATTGTCGATCTCCAATACTTTTTACACTACTAGGGGTCGACAGATTGATTACTAAAAAAAATTAGATGTTTTATCATCTTTTACACCCAAGAATTCTTTAGTTAGCCATTTTTCATCTCTACTTTTAAATATAATGAATGAGTCTTTATGATCCCTGATGTATTCATTTAGTTCTTTCTTTAATTTCATTAGATTAACTTCCGTTAAATTTCCTTCAAAGACGGATTTTTGTATATGGGTAAGATATCTCTTACATATTTTAAAGGTATTTCTTTGAACTTTTGGACCATCCTTGTCCATCATTATATCATACATTAAGACTATATACATAGTATCACCACCAAATCCTAAAACCACTATATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTACTCTAGTTCTATTAAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 6859-10991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEE010000010.1 Alkaliphilus hydrothermalis strain DSM 25890 Ga0454045_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6859 30 100.0 36 .............................. GCTATTAACATATAACTGGAATTGGCTGCCTTTAAT 6925 30 100.0 35 .............................. GTGTAGTCTTTGTCTATGATGTAACTTTCAGGAAA 6990 30 100.0 35 .............................. TAGAGTATCTAATTACGAAATGCACCGTTTCTTCC 7055 30 100.0 36 .............................. CCTTCATAGCGGATTGGTTCTTGATTTCGTCAATTT 7121 30 100.0 36 .............................. GTGTCATTCGGCAGTGGACATAGTATGGTGTACACC 7187 30 100.0 35 .............................. TTGACATATAGGACCACGCTCTATTATTAGATCGC 7252 30 100.0 36 .............................. CTGGGAACTGAAAACTATAACGTCGAAGACCAGAAT 7318 30 100.0 37 .............................. TCTCCAATGTAGATAAGTAATCACCTAAATTATTAAC 7385 30 100.0 35 .............................. ACCTAACTCATACACAAATGAAGAACAAGAGATAT 7450 30 100.0 36 .............................. TTAGAAGAACACAGGAAGGCTTTAAATCTGATATCA 7516 30 100.0 37 .............................. TCGTCTATAATGCTTAATAGTCTTTGTAACTTCTTGA 7583 30 100.0 36 .............................. CCTTATATATATTTCTCTCATTGGTAATTCCTAATA 7649 30 100.0 35 .............................. TCTTTTTTAACAATAATCATATGTAGTTCTTTGGC 7714 30 100.0 36 .............................. GCGAATGTCATAACTTCCTGCAGCTCCCCGGCAGAG 7780 30 100.0 37 .............................. GTAATCCACGGCGCAGCATGACTGGTTCCGTAGTCGT 7847 30 100.0 35 .............................. TAGATAATACGTTTCGTAGCTTCTTTCTTACTTGG 7912 30 100.0 36 .............................. CCCACGGAGAGCATGAACAACTATTAGGTAGACGTA 7978 30 100.0 37 .............................. AAGAATGATGAACACAAAGAGGAAAGAACTAAAACAT 8045 30 100.0 37 .............................. ACATATCCATCAGCTCCTTCCAAGGAAATTTAGTACC 8112 30 100.0 37 .............................. GTGCTTTTACTAAGCCAGTTGAATCGTGGGGCAAATG 8179 30 100.0 35 .............................. GCATGAAATGATGAACAATAATCATCGTCCTTAAC 8244 30 100.0 35 .............................. CTTTGTTCCTTTCTTAGTGATAGTTCCTTGCATAA 8309 30 100.0 37 .............................. ATATATAACTAAGCATCTTTAATGCGTGAACAATTCC 8376 30 100.0 36 .............................. CATTTTTAATAAGACTAATCGTTATTGTTCCTTGTC 8442 30 100.0 36 .............................. TGATGAAATTTCAAGGATTCGATGAAGATGAACCAT 8508 30 100.0 36 .............................. GAACATGCTTGGCTATTTGAAGAAGAAGGATTAGAG 8574 30 100.0 37 .............................. AAGAAACTATCAGCCATGGAACAGCTAAGACTTCAGT 8641 30 100.0 37 .............................. ATAAAGAACAAGAAGCGATTATAAATAAAGGATTCGT 8708 30 100.0 37 .............................. TATTGATTACTAAAAGCCAAGAGAATACAGTCACTAA 8775 30 100.0 37 .............................. TTTGGATTCATCCAATGGCCATCATTGACATACTCAG 8842 30 100.0 37 .............................. AACGATGCAGCAGGAGCAGTGATCAAAAAGTCATCTA 8909 30 100.0 37 .............................. CTATTTTGAAATGACACACCAGCCAAAGTCATTACTG 8976 30 100.0 34 .............................. TAATATATCACTCCTTTGATACTTTTTTGCATAG 9040 30 100.0 37 .............................. CCAATTTACACTCCCACCTAATCGAATAACATCTCCA 9107 30 100.0 37 .............................. GTATCCTCCTAAATGGCTACCGAGGAATTATTCAAAA 9174 30 100.0 36 .............................. GCATATGACAGTAGCGAAGTAAGTTGTCGGAGCCTT 9240 30 100.0 37 .............................. TAATATAAAACCACCTATTAAATATCCCATAATCTCA 9307 30 100.0 35 .............................. ATGGAATTTTTATACTGTTGCGATATAAAGGCTGA 9372 30 100.0 36 .............................. TCTTTTTCATAAGATTATTAGCTATTGCTATACTTA 9438 30 100.0 37 .............................. AATTAACTCCTTCATTTTAACCCTCCTAAATTATCTT 9505 30 100.0 37 .............................. ATAAAATGGAAGCAGATGAGGTTGGGAAGGTATCTGA 9572 30 100.0 37 .............................. TTGGTCATGGGATGGACAAGCCATTATGGACCACAAC 9639 30 100.0 35 .............................. CCATGCTCCACCATCAGCTTCAAATATTGCTGCTG 9704 30 100.0 36 .............................. TTAGGAATTAGGTTCTTATTTTCCTCTAAGAGAAGA 9770 30 100.0 36 .............................. ATATCCTTCCCCTAGGCATATTACAATTTAACCCCC 9836 30 100.0 37 .............................. TTAGTAGCGTGTCTTTAACCTCACTACTGTGTAGAAT 9903 30 100.0 35 .............................. TATGCAGTGCACAAATTAAAGTGGGACACATGGAT 9968 30 96.7 36 ................G............. TCGAAAATGAAGAGGGAGAGATCATCAAAAAGCTGG 10034 30 100.0 37 .............................. AATTGTGGCTCATTAATGCTTCTATCATAGATTAATA 10101 30 100.0 37 .............................. CCGCATAACGATCAACGGACAGAGGAAAATAATTAAG 10168 30 100.0 36 .............................. GAAGTCTTCGGGATCTATCAGCCAATACTTAAATCT 10234 30 100.0 36 .............................. TTAACCTGCATATTCCAGGAGTGAACACCATTCCAC 10300 30 100.0 37 .............................. GAAAAATTGACAATGGAAGAAATTGAAGTGATCAAGA 10367 30 100.0 36 .............................. ATAGGTGAAACAGTGACAATAAGAACAGCCAACGAC 10433 30 100.0 36 .............................. GGAGGTAGTAATGTTTAAGCATACATGTACTCTATG 10499 30 100.0 37 .............................. TGATTTTAATAGATTTAAAGTCTTTACCTTTATCACC 10566 30 100.0 36 .............................. GTAATACACTCAATATCACGGTTAGTATGGTTGCCT 10632 30 100.0 35 .............................. ACTTTAGTCATAAGGGCTATAATTTCTTCTTGTCC 10697 30 100.0 36 .............................. TTATTTTTTGTTTAGCTATTCTTACCATTCTTTTTT 10763 30 100.0 37 .............................. CTTTCATTGATCAGTCTTACCTCTCCACCAATAAATC 10830 30 96.7 35 ............................G. TAATTTCATCGGGTGTCATATGTCCTTTGGATTCT 10895 30 100.0 35 .............................. GTAACCTGTCTAACCATGTTTCTATGTCTATCCTG 10960 29 86.7 0 ........T...........A..A.-.... | C,GG [10983,10989] ========== ====== ====== ====== ============================== ===================================== ================== 63 30 99.7 36 CCCTTAATAGAACTAGAGTAGAATGTAAAT # Left flank : AAAATACGAAGGGTTTGCTCCAGGGTTTGAATATTAGCACCATTCTTTATCTCAACAGAAAAACCTTGCCCCTTTACTACAGCACATGTATCATTTTTATTTTCGTAAGTAGTATCTTCTTCTCTGATCTCAACAGCGGCAAAAGTGGCCGGAGGTGCATGTAATTCTTTTTGTACTAAAGCAACGGATTCATTTCGTATTACTCTTAACCAGTAGTAGTATTGACTTGATTTAATTGAGTTTTCCTTGCACCAGTCCCTAATTGTTTTCCCACTACTTCTACATTCAGAGATAATCTGCCGCCATTCGTTAATCCTTACCTGATGATTTACTTCCCTCATATCCATAGCAATCCCCCTGAGACTTTTAAAGTTTTTGTAACACTAGTAAAGACTTTAAAAGTATTAGATTTGATTCTATTGTCTCATTCAGAAAGCAACTTGAAAATACATCTATTATTGTACGCTTACTAAATAATGATGGAAGTGGTGCAGGTGCAC # Right flank : TTTAAGTATTTAGTAGGTTCTATAGCTACTAGATTAAAAGAACTAGATCAAAATGGAGTTCAAGCAATGCTTTCAATAGTTTTTCACAATAAAACAGCCCTTATTGAATAACCTCCCCAAATAAGGTAAGATAGACATATCAATATGATTTGGAAGGGAGCAAAAAAATGGATTTACGTCACCTTAACCAACAACAACGGGAAGCCGTTTGTCATACAGAAGGCCCCCTATTAATACTAGCGGGGGCAGGGTCTGGTAAAACTAGAGTACTGACCCACCGTATCGCATATTTAGTAGAAGAGATGGAAGTATTCCCATATAGGATATTAGCCATTACTTTCACCAACAAAGCAGCTAAGGAAATGAAGGAAAGAATCGAGAATCTGTTGGGGGAATACTGTAGAGATATATGGGTTAGCACCTTCCACTCCTCCTGCGTTAGAATCCTAAGAAAAGACATAGATAAAATTGGTTATCAAAAGAATTTCGTTATTTACGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATAGAACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //