Array 1 1322-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEY01000007.1 Neisseria meningitidis strain 1044_NMEN 44_61779_1634662, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1321 33 97.0 32 T................................ CGGGCATATTGGCGGTGCATTATCCCTTCCGC 1256 33 97.0 33 C................................ GTTACGTCACCAATACCATCAGCCATAGACAGG 1190 33 100.0 33 ................................. TCGCAAGGCAAGCACCCAAGCAAGCTGTACATT 1124 33 100.0 35 ................................. AATATGAATCGGCGGCTTGATTTCCTTACCCTGTC 1056 33 97.0 32 C................................ ACATATTTCAGCGTAAACGCTTCGTCAGAAGA 991 33 97.0 33 A................................ CTTGACTCACTTGAGAAGAAACGCAACGAGATT 925 33 100.0 33 ................................. GTTATTGTCGTAATGTGAGTAACGCCAGTGTTT 859 33 97.0 34 T................................ ACAGGCGGTGTCTGGACGTTCACAACCGACACCG 792 33 97.0 33 A................................ GGTTGACCTGTGTAACCCATTGTTGCCACGGCT 726 33 100.0 33 ................................. CAATGGAATGTGCCTTTGTACTCGATGGTGAAG 660 33 97.0 32 T................................ ACGGATGATGTTCATCAGGATAAATGGCGCGT 595 33 97.0 33 T................................ CAGCAATGTTTGGAACAGTTTGCGGATAGATTC 529 33 100.0 33 ................................. TAGCGTGTCATTTCGCTCCGCCTCTGTGTCGAA 463 33 100.0 37 ................................. AATGGTTACCACATATTTACCGGCTTGGTTGATATAG 393 33 97.0 32 C................................ CAACTCTCGATGCTAGAAGCAGACAAGTATCA 328 33 97.0 32 A................................ CAACCTTGAATCGCGGTTTATTGAAAATAAAA 263 33 97.0 34 C................................ CCCCTACTCCTTTTCACGTTGCCCAAATTCATCA 196 33 97.0 33 A................................ CAGATGACGACAGAAAAACCAACAGGACGAGCC 130 33 97.0 33 A................................ CATGTGTCTTGAATCCATTGGGCAACCGCTTCA 64 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 20 33 98.0 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATATAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAGGACGCGGAAGGACAGGCAAGGTTGCGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAATATTCAGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGAATTATTCTTTAACAATCAGGATATTGCGAATGCAGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CAGCACATCTTGATACCACTGCCCAAGTTGAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 121857-120126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEY01000054.1 Neisseria meningitidis strain 1044_NMEN 266_121886_3123798, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 121856 33 97.0 31 .C............................... CATCACGTTATAGCCGTAGCTGTTGCCGATG 121792 33 93.9 31 GT............................... GATTTAAGACCGCCCCAGTCAGGATCGCCAT 121728 33 93.9 32 CT............................... ATTAGTTACCCCTTTAAACAGTAGGCGCGTGC 121663 33 97.0 31 .A............................... GTCGGTCGAGGCCATTTGTGTCTCGATGGCG 121599 33 100.0 32 ................................. GCCGACTTTTTCAGTTTTCGGACGCAGGTTGA 121534 33 93.9 31 TT............................... AAGACCAAATCGAGGCTGCCAAAACCAAATC 121470 33 100.0 31 ................................. CTTTTCTCGTTGGTTTTTTAGCCACGCTTTC 121406 33 93.9 31 TT............................... CCACCGGCGACCGCTACACCCTGCGCGAGCC 121342 33 93.9 31 GC............................... AATAATGTGAACACTTACTAGAAACAAAAGG 121278 33 97.0 32 .T............................... CATAGTCCAAACGTTTGAGTTAATTAGAAACG 121213 33 93.9 33 GT............................... GGCTTTGAATTTGTCAAACTCGGCGCGCAGGGC 121147 33 93.9 33 GT............................... AGTTTAAGCAGTATCAGATTGATATGGCGCAGA 121081 33 97.0 31 T................................ AATACGGAAAATTTCGACTCATGGTTATGGG 121017 33 100.0 33 ................................. GCTTGAGTACAGGTCATTATTTAACTCCCGTGC 120951 33 93.9 33 TA............................... AGGTCTACAAGGGCTTCGGTAATCAGTACCACC 120885 33 100.0 34 ................................. TCTTTAGGGGTTACGCTTTGGTAGAAGAGATGAG 120818 33 100.0 31 ................................. ATATGCGCGCGCAAGCCAGCCCTGCCATAAG 120754 33 97.0 32 T................................ AATCGCGCCGACGTTGAAGCGTTGGTGAATCA 120689 33 93.9 33 TA............................... TTCCTTTATGGGCTATAAGTTGCTCACTGGCTT 120623 33 100.0 34 ................................. TTTAGCCAAGTATTGAGTAACGTCAGTAATATAC 120556 33 93.9 31 CC............................... TTTCGATAACCTCAGCACGAATACCGCCTTC 120492 33 97.0 34 .A............................... GAGACTACGGCGAATATCCAAGTAGCCGAGAACG 120425 33 93.9 32 TC............................... GGCATGGTTGAGTATGAAGACAGTGTTACTGG 120360 33 93.9 33 TA............................... CAATCGCCACGCAACATCATGACATTGCCCACG 120294 33 93.9 37 TC............................... GCAGTGTTTTGGCCGTGTCAGCAATCACTATCGCGGC 120224 33 93.9 33 TC............................... CAGCAAAACCCTCTACTCGCTGCCTTTACCGGC 120158 33 93.9 0 CC............................... | ========== ====== ====== ====== ================================= ===================================== ================== 27 33 95.9 32 AGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : ACATCTTGATACCACTGCCCAAGTTGAGA # Right flank : TCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGAAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGCC # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //