Array 1 5326-4817 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000013.1 Gilliamella apicola strain ESL0182 Ga0133558_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5325 28 100.0 32 ............................ TTGAATTCTAGTGATGCTGTGACAAGGTCATT 5265 28 100.0 32 ............................ AGTTCAAGATTTAACGTACGCAGTGAGACATT 5205 28 100.0 32 ............................ AAATGGGCATATCGGAATTTTTGAACGTCAAC 5145 28 96.4 32 ...........T................ CGATGTTGTGTGTAATTTATATGAACCAGCTA 5085 28 96.4 32 ...........T................ TCAGCTGCATAATGCATTTTTATCGTAAACAT 5025 28 92.9 32 .....A.....T................ ATTGCCTGCTCTTCATTTTCTGCCATAAATTC 4965 28 89.3 33 A....A.....T................ TCCATAGCCATTGCATTACCCATTTCGGTAAAT 4904 28 92.9 32 .....A.....T................ ATTCACTAGCTAAATGACTCTGACAGCCAGCC 4844 28 92.9 0 .....A.....T................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 95.6 32 GATTACTGCCGAGTAGGTAGTTTAGAAA # Left flank : AATCCATACCTTGAATTTTCCAAGTTAACTTAACGCCTTGGCTACTCCGCTCTGGGTCTTCGGGGGGATCTTCAATATCACATTTTTGTGATGAGCTATGATCATGCCCATCACAGCATGCGGTGTGACTAGTTTCCTGAGAATGGTGAGAATCATGTGAATGATTATGAGCAATATTATGACAATCGCCATGACAATGATCGTGATTATCGTGGTGAGATTGCCCGGATTTGTTATTATATAACATAACGTTACCTCTTTTTGTGGATGATTTTGATTGTACACTCAAAAAAACAAAAAGAAATCTTTTTTAAACAAATTTTCCCAAAAGTTGAGGAAGTTTTTTTCAGCCAACATCATGCTATTGCCAACCTTTTTTTTGACTAAAAATAAAATTATTAAAAATCAATAAAATATAAATTTGTCAAAAAAAAGGGTTTTTGTAAGTAAAAATCCACTTTTACTTCTTGCAAACTATGTTTATATTATATCGTGTTCTA # Right flank : TTGAGCGTTGGCACTTGCGACCGCATCGACCGATTAATGCCGTGTAGGCAGTCATTTTCCATAAAAAAGTTGAGGAACGATTCTCTAAGATTCAAAGCTATACTTTAAAATTTTAAATTAATAATAACATTTACAAAAGTTAACAAATTAAAATTTAAAAGCAGTTGCTTAGATTTTTTTTTGTCACTATACTTCCCGCTGATTTTAAATACAAAATCTGGTTTATATTTAGTCATTGCATCTTAAAAAATCATATAAAACATTAAGTTACTTGACAGGATTGTCATTATGAATTATAATTTTAAACACCAAACACCAAACACCAAACCTGCCTAACCCATCATTTAAATTCGATTAATTTTAGTAATAAACCAATCATTCTACTTTTATTGACGTTATGTATTTTAACGGTCAGTCAAAAAAGTCATGCACTTACAGCACATACCATAAATATCATTGTTGGTAGTAAACCGAAAGTTGTCGATATAACAGCAGCTGCC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTACTGCCGAGTAGGTAGTTTAGAAA # Alternate repeat : GATTAATGCCGTGTAGGTAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 217290-216540 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000013.1 Gilliamella apicola strain ESL0182 Ga0133558_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 217289 28 100.0 32 ............................ TATCCACCATCAGTCAATAACTATTGGAGAGT 217229 28 100.0 32 ............................ AATTGAGATTGGTTTTAGTAGGTTTTTCGATA 217169 28 100.0 32 ............................ GCTCTGAACTGTATACCACTATCTAAAAACAT 217109 28 100.0 32 ............................ ACATGTTTAAAGTTTTTGGTTTCGCAAATTTT 217049 28 100.0 32 ............................ TCCTTATTTCTTTTTTAAAATCCACATCTTCA 216989 28 96.4 32 ...............C............ ATTTGCCAGTAAAACAAATAGAACAGAACCAT 216929 28 96.4 32 .........T.................. TCACTTAATAAAACTGATCCAATGTGTATTTG 216869 28 100.0 32 ............................ ATCAGTTAATAAAACGCTGACACGAACGATGC 216809 28 96.4 33 .................A.......... CAAGACTTCTGAAATTTATCCATATTAATTGGA 216748 28 100.0 32 ............................ GCGCAAGTCCGGTAAAATTCCCGACGGATATG 216688 28 100.0 32 ............................ AATCAAGCAGGGCATTTTTGAGTATTTAGGGT 216628 28 100.0 33 ............................ CCATTGCGCAAGTTGTAAATCCCGTTTTCACAA 216567 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GATTGATGCCGTATAGGCAGTTTAGAAA # Left flank : TTTTCAATCGCCCATTGAATTAAGACTTAAAATATTTTAATCGACCAACCGATTTTATTAATCGAATTATAACTAGTCTAACAATTAACTATCCAATATTCAAAAGGCTTTTAGAATAAAAAGCAAAAACTAGAAAATTAATTGGAAAAAGGGTAGAAAGTGATAAGCGTTTTTACTAGAAGTAGTATAAATAAATTCGGCACAATTTTTAATTGATGAAATGTGATGATTATTGGTTGCCCAGATTGAAAAATCACAGAAAAAATAAATTAATATCTACTTATTATAGTAATATCAACTAACCTATAAACACCTTGCGCAAAAAAGTTGAACCCTCTCATTTTGAAAACCAAAATTACCTTATGGTTAACCCTTTTTTTTGAAACAAAATAAAGCCATTAAAAATCAATGCATTAAAAAGTCACTTAAAAAAAGGGTTTTTATAACCAAAATTACTCTTTGCCTTTTTGTAAACAAGATTTATAGTATGTCTGGTTCTA # Right flank : GATAGCATTCCAAACGCTAACTCCTAAATCATGCTCTCTGCCGTAGGAAATTCACAATTTACAATCAAAATCCTGATAAACCGCTCTAGTGAAGTGACCCCATAAAGTTGGACGCTTTTATTAAGTGGTTTTTTATTGCCCAGATATTTTAAATAACTTACCATTACTTAAAATCGAAGGAGAGGGTATGAAAAGAATTTCGTTGTTATGTTTAGTTTGCTTGGCATTGTCTGGCTGTGATGATGATAGTGGTGGTAAAGTTACTAATGAGTTTTTGGTTGGAAAGTGGGATTGTAAATTAAAAAAATTCTTTGCTAAAAATGAAAATGGAAAACTTTCTGATTATGCAAAAGATGGTGAAATTATTTTTGTAAAGGAATATAAATTAGACCAAGGTAAACTATACTCAAAAAAAGATAATTCTAAAGATTGGGTATACATAGATCTAGATAATAGATATACGGGTAAAACTGATGTTATTCGTGACGATGGATTTCGCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTGATGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 47662-47270 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000012.1 Gilliamella apicola strain ESL0182 Ga0133558_112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 47661 26 100.0 35 .......................... CCGTGTTTTATCAGTATTTCAAATGGGAGCTCTAG 47600 26 100.0 35 .......................... CCGGCAGAGGTATCACAAACCATGAGAATACTAAT 47539 26 100.0 35 .......................... CCGTTCGAGTTTTTATCAACCCACATCCCCAGAGT 47478 26 100.0 35 .......................... CCGAGACAATCGAATATCTTATTAGAAATGGTTTT 47417 26 100.0 35 .......................... CCGACAAAGATGACATTATTCGATTTTTAGAAAAG 47356 26 96.2 35 ............C............. CCGGTTTTTATGAGGGAGCTAATCGGCGTTTATTA 47295 26 76.9 0 ....A....T...GT..T.......T | ========== ====== ====== ====== ========================== =================================== ================== 7 26 96.2 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GTCTAACACAATACCCATATGAGAGAATACGTTCGCTATCTCGTTACAGTTTTGTGCTCCAGATCTCCTTTTGAGTAATTTAAGGCGTAGTTATGATGCGACGAGTGGCGTAAAACAGTGTTGCCTGTATTCACTGGGATTAATCAATAATAGAGATGAATTTTGACCCTATTGAGTTACAGTTGTTTAGTATTTGTAAACAAACATTAGCCACTGCTATCAATCCGTTGAATGATTTGCGAGAAAAAATAGAATCGTCAGCGTTAAAATGTCACCATTAAAGAATTACAGGGCGTGCAAATGTGGTTCGTCAAATCGCTTACTTGATCAGATACCCGCTTATAGCCAAGTTACATAAGCAAATAACCTAAAAAATAGAGTCATTTTGCTAATAATAAATCACTAAAAACATCTCAATAAAATCATGCAAAAAAACAGTAAAAAAGTTGGTGGAAATTTATCGCTTAGTATTTTAACTAATAAACAATAAGTTATAATAA # Right flank : AGGTGCACAGTTACAAAAAGAATAACGAATAGAAGAATTACTAAAAGTTTATTGATTTAACTGTCGAAATTTCATACCATTTAAAAAATGAACACATTAGGATGGAAAGTATGAAAAGGATTTTGTTTTGTTTATTGTTTTTCCCTTTTCTAGTTAGCGCAAATTCGAATTTAACCGAAAATGATATATCTACATATTTAGCTGACATATGCAAGTCAACCCCTTATTATTTCACACAACAAATGAATGGATTAATCATAAAGGATAATAGCCAAAGTACTATCGGGAAAATTTCACGTGAAGATATAAACAAATACAAATTAATAGAAAAATATAAAAACCTTGGTGATGATGCGTTCAAAAGTTATGCAACAATAATTGACATGACTGGTGAAATAAATATCAAGAATATTCACTCTGAAACCAGAATTGCGGGTGTGTGTTTAGTTTTAGTCGCTCAAGATGACATAATGAGTGTAACTGCTGACTATGTGATGGCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13154-12088 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000006.1 Gilliamella apicola strain ESL0182 Ga0133558_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13153 29 100.0 32 ............................. TATTGAGGTATAGCTCGTTGCATGATGGCTAA 13092 29 100.0 32 ............................. TTTGGTAATTTTAACATTTCCATAATTCTCTT 13031 29 100.0 32 ............................. GTTATTCACTTTTTTATAGAAGGTACAATCTG 12970 29 100.0 32 ............................. TAATCCATCAGCATTTAGTTTAGCACCATCAG 12909 29 100.0 32 ............................. CGCACCTAAGTAGCGGTGATGACCATCAATAA 12848 29 100.0 32 ............................. TGGTGGCGATTACTGATTACTCTGCAAGACGC 12787 29 100.0 32 ............................. GGTGGGGTAAAAGTTAATATTGGCCAGAAGGC 12726 29 100.0 32 ............................. GTTTGGCTGGACAAAAGAGCAGTTTATTAATG 12665 29 100.0 32 ............................. GCACGTCATCATGATCAGCATCAGTTCGAGCA 12604 29 100.0 32 ............................. CTTTCACTCCAAACATTTAACTCGCTATTATA 12543 29 100.0 32 ............................. CTCACTCATAGAATTCGACAAACGAATGTAAA 12482 29 100.0 32 ............................. TTTAAACGATGTGGGTCAGCATTTTTCTTCCT 12421 29 100.0 32 ............................. TAATCTTCTTGTACGAATTGATTTTGAGTAAA 12360 29 100.0 32 ............................. CAACACCAACATTAATCGTTCAAAAACAATTA 12299 29 100.0 32 ............................. TAATGTCCCAAAGTCGCCGCGAGCTTTGGTGC 12238 29 100.0 32 ............................. CACAATATCATAATTATTATAATTTCCAATAT 12177 29 100.0 32 ............................. CCGGCGTTTTAGAACCTGCACAAACTGTAATA 12116 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : AAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATCTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCGACAACTTGATGAACAGCCTCTAGAAAAATTGAGACAACAAATTCATAGACCAAATGCCATTATTGTGTTAATTGAGCCAGAAAAAGAGCCCTCTTTTTATTCTAAGGAACTAGGCTTTTATCTAAATTAATTTAATTCAAAGTTAAATATTAATAATTTTAACTAACAATAAGTTGAGTGAATTTTATACAGAAAAATCGGTAAAAAATTGCTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGA # Right flank : ATTCATAGCACATGAATGCCTGAAAGTATGGGGTGTTCCAACTCATCAGCTTGCAACTTCAAGGTTTATTTTAGATGTTCACTTGCGGGTATATAACATAAGCATTACCGTTTGGAATCTGTTGGTAGATTCCATACTTTATAGAAAACCGGTAGCCATCTGTTTTTTAAACTATTCTGCGGTTAAATCACAACTCACACCTTAATCATTAAAAAGAAAAAAGATCATATGGGCAACCATCTTCATACACAAATTTCATCTGATCATTAATTGGTCTCATATCAGCTGCACCGGGGACTTTATCAAAATTCTCTCTTAAATAACGATATAATACCCCGATTTTCTTTTTCTCTTCAGCAGTTAATTCATCGATTAAATCTTTATTTTGAGTTAAAAAATAGCGATTATTTTTTCGAAAATAATAAAAACAACCAATATTTTTAAATAAACTCCAAGCATCTAGTGCATCTTCCTTTAGTGAACTTAAGTATAATTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30591-34710 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000006.1 Gilliamella apicola strain ESL0182 Ga0133558_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 30591 29 93.1 32 .A.........G................. CAAATATAATGGGTCGTAGTGGTTTAACTATT 30652 29 93.1 33 .A.........G................. TTAACAGTACCATGTGCAACATCTACATTGTAA 30714 29 93.1 32 .A.........G................. CAGTTTCTTGTAGTGATGAATAATCATCATAG 30775 29 93.1 32 .A.........G................. TTGAATTGGGTTGAGTTTAGCCACGTGCCTGT 30836 29 93.1 32 .A.........G................. ATTTAGTTGAATTTTTATTATCATTAAATGTT 30897 29 93.1 32 .A.........G................. GTAGACATGGTATTACTGCGCTTCATCTTTTA 30958 29 93.1 32 .A.........G................. CTCTATGATTGCCATCTTTCTACTATCCCCAA 31019 29 93.1 32 .A.........G................. GCTTTGGCGATTTCTTTTGGCGTGTAACGTTT 31080 29 93.1 32 .A.........G................. TTCTTGCCGTTCAATTCACTGGCTTTTGCCTG 31141 29 93.1 32 .A.........G................. TATTTAAAAAATGTGTTTCTTTTCCAGTCGTT 31202 29 93.1 32 .A.........G................. TATTCGTTAAGAAAAATAGCAATCGATATTTA 31263 29 93.1 32 .A.........G................. TCAATATATCGCTTGAACGATTTAAATCCAAA 31324 29 93.1 32 .A.........G................. ATACTGATACTTCTTTGATTAATGTATGTGAA 31385 29 93.1 32 .A.........G................. CATCAGTTGAATCTTTAAATCCAATAGGGGCA 31446 29 93.1 32 .A.........G................. CGTACGGCAATTTACCGATAAAAGTTAACGAC 31507 29 93.1 32 .A.........G................. TAAAAATAGAATATGGTAGTTACAAACCTGAT 31568 29 93.1 32 .A.........G................. CGTCACCTCAGATGATAAAATCACGGTTAATG 31629 29 93.1 32 .A.........G................. CACCTCCATCCATCCAATTGTTTTTATCTGGA 31690 29 93.1 32 .A.........G................. CGAACAGTCTAAGCAGGCAATTTATGCCGATA 31751 29 93.1 32 .A.........G................. GTTGAGGGCGTTTTAAATATTGATGAATTTGA 31812 29 93.1 32 .A.........G................. CGTCCCACCGACGAACTCTTTCTGATAAATAG 31873 29 93.1 32 .A.........G................. CACATTTTGTTTTCTAATTTTTTCGTGATATT 31934 29 93.1 32 .A.........G................. TTTCGTTACCCGAATCTACATTCATAATTCTC 31995 29 93.1 32 .A.........G................. CCGGATTACCTGTTTTCCTAAATGGCGTATCG 32056 29 93.1 32 .A.........G................. GTTAAAGGAAAAATTAACACCATTACGGCTAG 32117 29 100.0 32 ............................. CTTATTCGCAAATTTCCCTAACGCTTTTGTCA 32178 29 100.0 32 ............................. AATCGCTCATACGCACCGCGGGGCCTTGCGGT 32239 29 100.0 32 ............................. AATATGAAGGAAAAGAGGAATATGAAACAAAT 32300 29 100.0 32 ............................. TATTTACAGGGGTTAGATAAAAGTAATGGTAC 32361 29 100.0 32 ............................. TCAATTTTGACATTCCAAGATTTGCGCAAGTC 32422 29 100.0 32 ............................. TTTACATTAAAGGGGAATTGCAAAATAATAAC 32483 29 100.0 32 ............................. TACAACCAATGGTGGAATTGTTGTTGTATTAA 32544 29 100.0 32 ............................. AAAAACTAGCGATTTGTATGACTTTGTATCCG 32605 29 100.0 32 ............................. TCGTAGGGCTTGCTGAGCAGTATTGCCGGTGG 32666 29 100.0 32 ............................. AGGTATGCAAGGTGCTAATTTAAATGTTGTTA 32727 29 100.0 32 ............................. GGACAATTGTTTTCGAAAATACCGATATTATC 32788 29 100.0 32 ............................. TGAAATGTTAAAAATTAATACAAACGGCGGTA 32849 29 100.0 32 ............................. AATTCCATTTCATTGCTCATCCATTAAATTTT 32910 29 100.0 32 ............................. AAATTAAACAAGCCATACAGTCAGTTGATTGG 32971 29 100.0 32 ............................. TGCGAACTCCGTAAAAAAAGGATTACCTTGAA 33032 29 100.0 32 ............................. ATAATGCAAGCGATAATTATAATCCCGCGTTA 33093 29 100.0 32 ............................. AGATATAACCGATTTTACATTTCCACCGCAAG 33154 29 100.0 32 ............................. TTGCGTTTATTGCCAGCAGTAAATATATTCGT 33215 29 100.0 33 ............................. GATTATTGGTATTTTGAATATCGTAGACCTTTA 33277 29 100.0 33 ............................. GATTATTGGTATTTTGAATATCGTAGACCTTTA 33339 29 100.0 32 ............................. GTCTTGTTTTCCAAATTGAAAAAGAAGCGAAC 33400 29 100.0 32 ............................. CAGACAAGTTTTGTAATTCCTGTTCATCAAAA 33461 29 100.0 32 ............................. ATCATAAATTTCAGTATAAGAAGACCATATGG 33522 29 100.0 32 ............................. TTAACAATGTTTGAATGTGAACACTGTTTAAA 33583 29 100.0 32 ............................. CTAAAACACAAGACGGCTCAACCTATACTTCT 33644 29 100.0 32 ............................. TGTTTAATATAAAACAAAAAATATTGAACTGG 33705 29 100.0 39 ............................. AATATTATTCTTTAATTTATCTTTGCGTCTATGCGTTCC 33773 29 93.1 32 CT........................... TCATTTTAGGCGTTTATTCAACTGATGAATTA 33834 29 100.0 26 ............................. GATTTATCTGCCACTGAGTCATCTTC 33889 28 75.9 32 AAAC..G.-..G................. CGGACATCAGTAATTCGCGGTAATCATTAACA 33949 29 96.6 32 ...........G................. GTTTATTCAGCTAGTGAATGGCGTCAATTTAG 34010 29 96.6 32 ...........G................. TTTGATATCGATGCACCGCAGTATTTACTCGA 34071 29 96.6 32 .A........................... GTAAAATTACTGTTGAGTTTGAATATTTTGAA 34132 29 100.0 32 ............................. AGTTTCTGGGGTAAATAGCGGAGCTGAATTTG 34193 29 100.0 32 ............................. CCTTCGATAACCAGCATATAATCATTAGTGAT 34254 29 96.6 32 ...........G................. CTCGAAACCGCTGTTCTATGGGTCGTATTGTA 34315 29 96.6 32 ...........G................. TTGTATTGTTCATCATATGCAATTTCATCGTC 34376 29 93.1 32 ...........GA................ CCTGATAACTATAACAGCAAGAATGCTGTTGA 34437 29 96.6 32 ...........G................. AACCAGCTTTAGCAAATTTTCATCATAATCAC 34498 29 96.6 32 ...........G................. CAGATGATTTTGGGTATTGCGTAATGACTGAG 34559 29 96.6 32 ...........G................. TATAATGATTTAAAGAAAAGAATCGTCAATAT 34620 29 93.1 33 .A............C.............. TGCGTGGTGGAGAGGCTTTAGATCTATTTGTTG 34682 29 72.4 0 .A.......A...C..T..AAC....G.. | ========== ====== ====== ====== ============================= ======================================= ================== 68 29 96.0 32 GCGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCCCCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCGCCTAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTATATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTCCAAACTTATGGCGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : GGTCTATACGCCTTAATGTGTTTTACATAATTTTGATTAAATGATTTATAAATTTAGCTGTATATCTAAATATTTTTTTCAATAATTATCCAACGGTAATAGCATGTTCTTTAAAAAGAGGGGGATTGGTAAACTTTATTTACTATAAGAAATATATGGATAATTTTTAGTTGAGCTAAAATAATTATTAAAAATGTTTTAGTGTGTATGATGTGTTTTACACACTAAAACGCTTAATATTTAACACTGCCTACTTTTACCATTGATTTTATAAACCCACTATAATCGCGGTGTGTTTATTGGTTTTTATAATAGTTGAGTGGAGTTATGCTAACACTCGTCTAATACGAGAGGTTACACCTTTTAAGTTATAAGATTCAGCATAATCACGTATTGGTCTTTTTATGTAATCAATCACATATCGTTGACCATCAATATGATTATTTTTCAAATTAGCATACATCTTTTCAATTTCTGCTTTGACTTCATTATCATTGAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : GTTCCCTGTGGGTACAGGGATATACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 244665-245292 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000007.1 Gilliamella apicola strain ESL0182 Ga0133558_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 244665 28 100.0 32 ............................ CTCATTTTTAGATATATCACGATTATTATTAC 244725 28 100.0 32 ............................ TAGCTCCCTCAAAACTGTTGAAGAGTAAGACG 244785 28 100.0 32 ............................ AAACGTAAATACATAAATGCCATCACTTTGAA 244845 28 100.0 32 ............................ CATCGAAAACTCTGGGACATTGATAGATTTCC 244905 28 100.0 32 ............................ TGAGAGCCAGTTAACAACCCCTCTTGACCTCT 244965 28 96.4 32 .................T.......... AATTGGTTTTAAAGACTCTTTTAAACCATCCC 245025 28 96.4 32 .................T.......... AGAATTAACGAAAAATAATTTTTCAACTAATG 245085 28 96.4 32 .................T.......... TACACGGCAGTAAATTTCAAAAATATCTTTTT 245145 28 96.4 32 .................T.......... AATCTGCACCAAGTGGGGCTTCAAGGTCTTTT 245205 28 92.9 32 A................T.......... TATCAACACTAATCAATTTTAGCAATGCAAAA 245265 28 75.0 0 ..................A.CAA.ATC. | ========== ====== ====== ====== ============================ ================================ ================== 11 28 95.8 32 GTTTAACGCCGTGTAGGCGGTTTAGAAA # Left flank : ATTACTCTGGCTGGATTTAATTTAACTAAAGCAACCGCCCATACCAAAGTACTTAACTTTACCTCTAATTTAGCCGGCTTAATCTTCTTTATTGCTGGTGGTGAAGTTGTATGGTCTATCGGTCTTGTCATGCTAGTGGGGCAATTTATCGGTGCAAGATTAGGCGCCAAAATGGTTATCGCTAAAGGTCGAAAATTAATAAGACCAATGTTAATTACCGTCTCAACTATCATGAGCATCAAACTCATTTATGAAAACTTCTTCTAGAAGAATAAAAAAGTCTTAATTAACGAATAACCCGGCTCCTCAAAATTTTTTGAGAAACCGGGTTTTTGCTCTTCACAAAGTCTAGATTTTAAATAAATATTAACCCTTTTTTGCGGCTAAAATTAAATAATATAAAAATCAATAGGTTAAATTGAGTCTCAAAAAAAGGGTTTTTTATAGCAAAATTGTCATTTACCTTTATTTGAACAATGATTATATTATATTGGTTTCTA # Right flank : ATTTGTATCTTCTTTTGGATAATTATAGTTATTTAAAAAAAGATCGTTTTTTACACAAAATGATGTTAATTTATCACCATTATAAATTGAATTTATTTTCTAAATATCATGGATTTGATTCATTCGTCTGATCTTAAAACCATTCTACATTCCAAGCGTGCAAATATCTATTATTTGGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACCGATCAAGGGCAGCAGTCATTATATTGGAATATTCCAATAGCCAATACCAGCTGTATTTTACTTGGTACAGGTACTTCATTAACTCAAGCTGCGGTGCGTGAACTTTCTCGAGCAGGAGTTATGATTGGCTTTTGTGGGGGAGGGGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTCTTTTCACCGCAAAGTGAATATCGTGCAACCGAATATCTGCAAAGTTGGTGTCAATTCTGGTTTGACGATAATCTCCGCCTACA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : GTTTAACGCCGTGTAGGTGGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 254618-254886 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000007.1 Gilliamella apicola strain ESL0182 Ga0133558_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 254618 29 96.6 31 ............................C GGCGATGATTGATATCGGTAAACGTAGAGCT 254678 29 96.6 31 ............................T GGCGTAGGGATAGTGACCCGAAGGGCGAAAA 254738 29 96.6 31 ............................T TTGAAGCAAAATATGACCACATGATAAAAAT 254798 29 100.0 31 ............................. TATTTCATAATGCGATAGAGTAATTTACGGC 254858 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 5 29 98.0 31 GTTAAATACCGTGTAGGTAGTTTAGAAAA # Left flank : AACGGCCTTACAACAGCAGGCCGTAGTTAGTGATTACACCTTATCCTTGCCAATAACATCTGTACCAACTAGTGTTAAAGGTTACCTACGCTTAATTCGTATCAATCCTAAAGGACAAAGTGCTTTAAGACGAGCCGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAGTAAAATGGTTGAAAAATGGGGCAGCGTTCATTTGAACTATCCACACCTCCATTTTGCTAGCAAAAGCACAGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATGTGCAACACCTGTGCAAGGTATATTTAACAGTTATGGACTAAGCAAAACAGCAACCGTCCCTGATTTTTAAATTGATTGACCCTTTTTTTAAGACGATTTTTAACTTATTGATTATTAATAATATTAAAATCAGTCCAAAAAAAGGGTCAAAATCATAAAAGTTAGCAAAAATTCTTTTACAATAAAGAAAAATAAACAAAAAAGTTCTA # Right flank : CATGTGAGATAGCGAGTTCTGATCGATGGTGGTTAAATGCCTGTAGGCAGTATGTCGTTTCTCAAGAAATTGAGAAACGATATTTTTTAATGCTAAACTCTCTTGCAAAGCTACCAATGGCGATTTTAAAAATATAATCCCATTAATTGTTAATTGAAAATTTTTATTCTTTTAAACGAGGTAGTATTCCATTTTGGATGGTTTAACATATCCATATTCTTTGATTTTTATCTAGATTACTATCAAAAATATGATCTTTTATCCTTATTGGCAGTATGATTTTTCATCAATAAACTACAATTACTTTTACTTGAAAGTTTACATATCTTAACAACTTTATTTTATGCAACGTTTGCCAGAATTATCTAATTTCCTTATAATCAAACCGCAAATTTTTTGAAATCTTTAATATAAAACAAGAATATACAAGACAAAAAGCTGAAAAAATGTTAAAATACAGTTGTTTAGTGGCCAGCCAGCCAGCCAG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATACCGTGTAGGTAGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTAACTACCGTATAGGTAGTTTAGAAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 147305-147572 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000009.1 Gilliamella apicola strain ESL0182 Ga0133558_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147305 28 100.0 32 ............................ CCTCCCCCCACGTAGCAGTGTAGGATTTTTTC 147365 28 100.0 32 ............................ TTCGTTCATGACTCTTTCGGGTGCGTCATCTC 147425 28 100.0 32 ............................ AACGGTTTATATTGATATTTTCGCTTTTTGGA 147485 28 100.0 32 ............................ GCGGAAGCCATCGCTGCATTAAAACGTAAAAT 147545 28 71.4 0 ............T....CC..A.CCT.T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTTAATGCCGTGTAGGTAGTTTAGAAA # Left flank : GGATAAAGTTATCCTTAATTTTGGTGGGCAACATGCTGAACTTTGGTGCAAAGGGGGTGAAAGTGCATTTATTGCCCGAATGATAACAGAGAGCGTTAAATATAAAACGCAGTGCCTATGGTTTACCTCGTTAGTATCAAAAAAAGAGTCGCTGAGTATTATAAAAAAACAACTGAAAAATGTAGCGGTAACTGAATACAAAATTGTCGCGATGGCACAAGGCCAAAAAATCAGTCGTTTTGTCGCCTGGACGTTTTTCAATCCAAAAGAGCGAGAAATGCAGATTCAAAGAGTTGAGCAACGCACTTCGTGAAGTCCAAAAAATTAGTGAGAAGTAGTTTTTTAAAAAATCAAAATCCATCATCGCGAACCCTTTTTTTTAGCCTAAAATAAAATCAATAAAAATCATTATATTAAAAATCAGCTTAAAAAAAGGGTTTTTAAAATCAAAATTGCCCTTTGCCTTTTAGCAAACAATGTTTATAGTATGTTTTGTTCTA # Right flank : TTTTCCAAAAAAAATTGAGGAACAGGTGGGGACCCCCTTAATTCCCCAACAAACAAAAATCCGTTGTTAGACTCAATACAATTGGTTTACTTTTCCATTAACTTACTATGATATTGCCGCCGATACTCTGTTGGGGTTCGTTCGGTTTTTTTTCTAAAGATGCGGCAAAAGTAGTTACTATCTTTAAAGCCTGCATCAAGGGCGATTTCTTTGACGTTTAACGCGTAACCTTTAAGTAGTGATTTGGCGTACTCTAGACGAATGTGATTAAGGTATTCGTTTAGGCCAATTTTGCCTTCATTCTGGAATAGGTAAGATAAATAATTGGGTGAGATATAGAACATTTTAGCTAAAAATTCGCGACTGATATCTTCTCGAAAATGGGTGTCGATATATTGACGTATTGCTTCGAATAAGCTGGTGGTTTTGGATGCGGTTTTTATGTCGGTATTAAGTAAATCAAGAGTGTTACTAAGCAGGCTCTGTATCAAATAATAGCC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 400723-400930 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000009.1 Gilliamella apicola strain ESL0182 Ga0133558_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 400723 28 100.0 32 ............................ ATTTAAACGAGTGGGCTTGAGTTTGAAATTAC 400783 28 100.0 32 ............................ TGGTATGTGTGGTTGACCACCATAATTCAGAT 400843 28 100.0 32 ............................ TCTAATGCATCATTACTAAATTTAACGCCATT 400903 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : CAAATATTACCTAAACCCACAGCAGAACCAGCAGCTGCAAGCATAAATCCCATGCGAGAGCTCCACTGTGAATGACTTTTCTTCATAGTACCTGTACTCATGAATATATTTTCCCTTGAGTTTTTTTTGATTAAATATTTAATTTCTAGTATCAGCCGAAGCCTAACTATTTTTAGATAAATTAAGCGCTAAATCATGCCATGAATTAAGTCTATAAACAAGAAGACATTATCATTTATAACGATAGTCAATAAAAAATTAAATGGTTAAAGTGGAGTTGAATGCTGTTTTGAAATGGTTTAGTGTAAAAAACAAGCAATAAAAATAGAGGAAATCTCTTCTGGGACGATTAAATTTATTCTTTTGCCAACCCTTTTTCGCGGGGGAAAATAAAGATTATAAAAATCATATTGTTGAAATTATACTTAAAAAAAGGGTTGTCAAAAGAATAAATGCACTATGTCTTTTGGCAAACAACATTTATAGTATATTGTGTTCTA # Right flank : AAAATAGAATCGGGAGGAAGGATCCAACCATAAGTTCACTGTCATAGGCTGAATTATAAAATTTTTAATAAAAATTATTTATTTAGCGAAAATTGTAAATAATCTATTACCATCAGTAATAGGAATTTAAGGGAGGATGGTATAAAAAACTTATTTTATGGATGATTTTTGCTCTTTTTTTGTTTTCAGCGATCATGAACTAGCATGTCTTGTTGTATGGACTATAAAAACTCAAACAGATCCTATTACTAAAAAGAAAGATGTAGAAATTATGGTTGTGGATTACAGCAAAAAAATAGAAGACGAAAGTGCAGGAATTTTATTTGATTGTAAATCTGTTACTCTTGTATCTTTGTCATTTGAAGAGCTTCCAAAAGAGAATCAAATAGGTACTTCAACAATAGTTATTCTGACGGTGGATAAAAATAAAAATGTAGAAAGATAATTATATGAATTTTGAATAATTATGATTTTAGTTTCAAAAAAGTTGAGGAACACAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 404046-404193 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000009.1 Gilliamella apicola strain ESL0182 Ga0133558_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 404046 28 100.0 32 ............................ TTGCATTTCATGAATTTGAGCGCTTAAACTAG 404106 28 92.9 32 C..T........................ ATTCATAGCATTACGAAGCGGGCGGCTAACTC 404166 28 96.4 0 ....................C....... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 96.4 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : CGCTACTTCCAATCTGATAATGCTGCCGACAAACTAGTACCAGAAGGTATTGAGGGTCGAATCGCTTATAAAGGACTATTAAAAGAGATTATTCATCAACAAATGGGTGGCTTACGCTCATGCATGGGATTAACAGGTTGTGGCACTATCGATGAATTACGCACAAAATCGAAATTCTACCGCATTACTGGCGCAGGTATGAAAGAGAGTCATGTTCATGATGTTCTAATCACCAAAGAACCACCTAACTATCGAGCAGGCTAATAACGACAAATAAAAAGGGATTGAAGACAATCCCTTTTTATTTGTGAAAAATATTCATTAAAAGTATAGAAGCGGTTTTTTAAAAACTAACATTCCCCCATTACTAACCCTTTTTTTAACAAAAAATAAAATTATTAAAAATCAGATAAATATAAAGTCGCCAAAAAAAAGGGTTTTTGCAAATAAAAATCCACTTTTACTTTATGCCAACAATGTTTATAGTATGCTGTGTTCTA # Right flank : ATTGTAGGTTACATAAAATGATGAAGTGTAACTTTAGAAAATCTAGATATTGTCAAATATATACCAGCTATTAATTTTTGTAATTTGTTTAAACTATCTTTACTCAAAAGATATAATTCCATATACTGACGAAATATGACTTTCAGTAATATTAAATAACTTTAGGTAAATATTAAGATAATCCATGAAAGCAAAACCAGCGACGATAATCAACAAAATTCAGGCTGAATTAATCCTTGCTCTTGAACAAAATAAAGAGTTAAGCGAGTTTGAGATAAAAAAATATCAAAGAGATGCAAATTCAATTTCTGATTATGTTGAGAGGAATCATGTCTTAGGTTTGTTATATACCATTGAAAAAAATGAATCTTTAATGCAGATGCATTTTGAACATGCATTATCTTTAAATGTAAATCTAACTGTATTATTTAATTATTTTACATCATTGATTTGTCTCTCGTGTTTTAGTAAATCAAAAGAAATTTTATATAAATACAAAG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 466912-467059 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000009.1 Gilliamella apicola strain ESL0182 Ga0133558_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 466912 28 100.0 32 ............................ AAAACGAAACATTGAGCGCTTACCATCACATC 466972 28 100.0 32 ............................ TTTTAAAACATAATCCTTAATTGTCTTAACCT 467032 28 75.0 0 .................C....CTCCGT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 91.7 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : GCCAACTTCGCCACTTACGGCGGTTATTGGACGACCGATAACCAATTTGCCGTTTGGTCGGGTTCTGGTTGGTTGTATGCCGTTATTAGTCCAAGAAATAGCAATGGGCTTTGCGTCTATCCTTAGCGCTTTATTTCTTGCCTATTAGTTCTTAAACTGGAGTGGCATAAACAGTAAAAACTGAGTTAGTTCTCTTGGAAATATTTGATTGCTAGAGACAATTGAATTAATGAAATGGTTAATAAAAAACGATTTTAAGACTTAGCGTGTACTCATCGCTTCGAGTAGAGGCTATTTGGGGCGTAATGGTATTATTACCGCAAAAATAAAGGAATACATGTTTTGAAACTTTAAATTAACCCATTGCTAACCTTTTTTTTTAGTTAAAAATAAAATCATTAAAAATCATTGCATTATAATACAACTTAAAAAAAGGGTTTTTTAAACCCAAATTGCCCTTTGCCTTTTAGCAAACAATGTTTATAGTATGTCTTGTTCTA # Right flank : TCTCTCAAAAAAATTGAGAAACGGGGTTTTTGTTATTCTAAGTTTATTCAGCAAACTTATTTTTATGATCATAACGATTATAGTGAATATCATCACTAATTAAGTAATTATAGATATCATCAACAATCTCTATGCCATTTTTTAAGTAATCGGCTTCACGTTTTTTGCTTCTTTCGCCGGGAAAGAAAACTTCACTAACGCCTTTGGCTGGTTTAGCTTGTTTTAGTTGGTCTAGCATAGCGGACATAGTTTGTTTAAAAATATCTAGGCCGATAAAATATTCAGGATTGATCACAATATGCAGATGACCGAGGTTTCGGCCTTTAGAGAGGTCGGCATACATTGATGAGACGTTTTTGCCAAATGGTAAGCCAAGTAGGATGCCAGAAAGCACATCTACCATCATCATTAAACCATAACCTTTGGCATCAGCGATTGGTAATAGGGCATTTACTTTGTAGGGATCAGTTGTGGGTTCACCATGTTCATCAACCGCCCAA # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 585327-585715 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000009.1 Gilliamella apicola strain ESL0182 Ga0133558_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 585327 28 100.0 32 ............................ TGCATATCAATCAAAGATAAAAGAACTGGAAG 585387 28 100.0 32 ............................ TTTGCTTTTTCCATAAGATATTCCCCTTTCTA 585447 28 100.0 32 ............................ TTACCATCATATCTCCCGGACTCAGCTAGTGC 585507 28 100.0 32 ............................ ATTGGAGGTGATGAATTCAATATTCCTGATTC 585567 28 100.0 32 ............................ TGCATTGACAACTTTTCTTAGCTCCTCTTCAA 585627 28 100.0 32 ............................ TTACTATGCATCTTCAAAAAAAGATGCTGAAA 585687 28 82.1 0 .................C......AGTT | A [585708] ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTTCACTGCCGTGTAGGTTGTTTAGAAA # Left flank : AACCTAACGCTAAGTTACCATTAGGGCTTAAAATAAATACCTGCTCACCAACTGATGGTCGCCACCATGTACGGCTTTTACCAGCACGATGGGTGAACCAAGGTAACCACGCGGTAATTAATTCACCGGTACGGACTTTAACCCGATCACCATTGGTTTGATAAACAACGCCAGGGCGAATCAGGTTTTCAATTTTTCGTAGAATGTCGACTAAGTCGGCGGGATGATAATTTTTCATAACGCCTATAATGAAATTTTATCAAATAAAAATAAAGTAAGCTTAGTTGTAGCAAATAGGCTTACAAATTTTCAAAGAGTTAAGTTAGAACAGCGTGTAGTTTGAATAATGCGATCACTAACTTTCTTTTTACCCTTTTTTTAGTTAAAATAAAAATAACAATAAAATCAATACATTAATTAAGTGGTTAAAAAAAGGGTTTTTAAAAGCCAAATAGCACTTTACCTTTTTGCTAACAGAGTTTATAGTATATATTGTTCTA # Right flank : TCGCTCGTTCTATTTTTAATGTCTTATTATGGCTAATTTGGTTTTGTCGATTTTAAGCGTTAGTTTTCGATTAGTAAAATGGATTAGTTAAATTCAACTAATCCATTTTAAATAGATAATAACTACCTCAATAAGCGTTTTTAACCAGATCATATCTTGTTTATTAGAATTCAATGGTTTATCTAAATATTGTGCTAGTTGCTCAATCAAGCAGAAGTTTAGTACCATGGTTATAATCTGCAATTATTAACTAAACGTTTGTTGGCCTATGAATTTTTAGTTAAAATTTTGAGGAGAGCACTTTTTAATCTCAGAAAAAATTGAGCAACGGGGGTTTTTAACCCCTTCAAATCATCTTTTAGACAGCAAATTTAAAATATTAATGTCAGCCCATTTTATTGGTTAAGCCAAGTAAAAGTTATTTATGGCCATACTTTTCTAACGGTTCTTGCAGAATTAGCCGATCTGATAATGAATCAAATTCCAGTTTATCTTGTTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 127655-127260 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLR01000010.1 Gilliamella apicola strain ESL0182 Ga0133558_111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127654 29 100.0 32 ............................. AAGATTTGATAAATTTTCTTCTTCAAATTAAT 127593 29 100.0 32 ............................. CCCGTTAAAAATGATTTTGTTGAGTTTGATTT 127532 29 100.0 32 ............................. GCGGTGGACCAATTCGCAAAATGTTGATAATT 127471 29 100.0 32 ............................. CGATCCGTATTTACTTCATAAAAGATTATGAT 127410 29 100.0 32 ............................. GAACTAATGATCGTTCTGGTATGTCTGCTGTA 127349 29 100.0 32 ............................. GCGAAGATGACGACAAAAAAGATGAATCTGAA 127288 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GCGCACATGGTGGTCGAGGTAGTGCTAAAACACGTTCATTCGCATTGATGACAGCAGTAAAAGGTTATCAGTTTGCGGAATACCTCGCTATCAAGATTTGCCTGCTAGTAAATTCGATGAAGGGATCCAGTAGCTAGATGGTATACAGTAGAGATTTTGGAGCTATTAATTTAGATAATTGTGTCGTCAACGTAATTACTAGGAAACTATATAGAAATATTATTACAGAGTATTTGATTTGTGTAATGATAAGTTGGTCATGTTTTTAGAAAAAAATAGTCTGCATCTTCATTACAATTTTTCAATAGCGATCAATAAAATTCAAATTAATGTATGTTTATCATTTAATTTCGTTGCTAATGAGATTGATATTTATAATTCAAAATTTAACAGAATTGAATGGTAATACCCCCCACCTTTGGGATGACATTACAGTTAAAAAAGTTGGTAGAAATTTCCAACTAATTATTTCAATTATAAAACAATAAGTTATAATTAGA # Right flank : CTTACTAGTAACACTCTCAGGGGCTGTATATGGTGTTTCCTGTATATAGAAGGATTAGTTGTAACTATTTATATTTTTTATATATTTATAGTTATTTTTTCAAGGAGTATTTTATGAAAACTACAGTAGTTAAATTTGCTATCACTTTTAGAACAAAACAAAAGTGGAGTAAAGAGGCGAAAAAAAATAACTTAACGTTAACAGAGTGGATCATTAATAAATTAAATTCAGATATTGAATTTGATCATAATCAACCAGTTCAACTTCATAATGACATCCCTGAAAATCAACGCTATTTTATATCTGTAACTGTTCCAAACGAAATTAAGGGATACTGGGTTTTTTCATCTAGATCATTGGGTAAAAAACTACGAGTATGGATTGTTAATAAATTGAATCACGGTATTGAGTAAAAAAATAACTAACTTTTTCTATTATTTTTCCCCTTTCTTTGTCTTTAGGGCGTTATTAATTGATTCATAGCGTCCATTTCGGACTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //