Array 1 875364-875039 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822011.1 Streptococcus thermophilus isolate STH_CIRM_23 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 875363 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 875291 36 100.0 35 .................................... TTTGAATAGTCTTTGAATCGCATTTGAACCATATA 875220 36 100.0 38 .................................... AGGTTTTTTGCCATAGATTTTCCAAGACCTTCCCAACT 875146 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 875074 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 96.7 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATTCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAAGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACAGTATTGATACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1115705-1113755 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822011.1 Streptococcus thermophilus isolate STH_CIRM_23 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1115704 36 100.0 30 .................................... ATGTTAAAGCTAGTAAATTGAACTTCGTTG 1115638 36 100.0 30 .................................... GTTTCTGAAATGATAATCAGTTTCGACATG 1115572 36 100.0 30 .................................... CACCTTGATAGTTTTTATTATTGAAAACGA 1115506 36 100.0 30 .................................... CAGTTCGGAACCACAATATAAGTAAAGATA 1115440 36 100.0 30 .................................... AACGCCTCTAAAACGTCCATAGAGCGTCTT 1115374 36 100.0 30 .................................... ATTTGATATCGTTTTCCATTTTAGTAGCAT 1115308 36 100.0 30 .................................... TAAACTTCGTTAACAACTTCATTAGTATAG 1115242 36 100.0 30 .................................... AATTATTAAAATTCAAAGTTGGATAGACTT 1115176 36 100.0 30 .................................... GGTGCATAAACAGCAGAAACACCTTTTTTA 1115110 36 100.0 30 .................................... TTATTTATTTGTACAAAAACTATCGACAAG 1115044 36 100.0 30 .................................... TTACATAGACAGGTATATTCGATTAAACAT 1114978 36 100.0 30 .................................... TACATTTAACGCATATAAGCACCCAGGACA 1114912 36 100.0 30 .................................... ATACGAATTCGGTTCGCACAATTACAATTC 1114846 36 100.0 32 .................................... TATCAACGCAATCATTACAACAACTTCAAACA 1114778 36 100.0 30 .................................... ATCTACGTGTCAATACATATCACAAAACAG 1114712 36 100.0 29 .................................... ATTTTTAGAAATTTCTGATATAATAATGA 1114647 36 100.0 30 .................................... TTGTTGGAACAAGGACGACTTGGTAAACTA 1114581 36 100.0 30 .................................... CAAAAAACTTTGATAAAAAAATATGTAGTA 1114515 36 100.0 30 .................................... CAAAAACAGTTGGCTCAAAACCTTCTTTCA 1114449 36 100.0 30 .................................... ATTAACAATGAGCAATACGACATTATCAAT 1114383 36 100.0 30 .................................... ATATAGTGATTGTATCCAGCTGCGGCGTAG 1114317 36 100.0 29 .................................... AAAAGCAAATCGCGAGTATAAAGGATATA 1114252 36 100.0 30 .................................... TTGTCATAATAATTAAATCCAATAGGACTT 1114186 36 100.0 30 .................................... TTATGATTGAATGACATGGTTGTATAAGTA 1114120 36 100.0 30 .................................... GAAAATTTCTGTTGTGTTCTTAATATTAGC 1114054 36 100.0 30 .................................... TTTCTTTAGGAATACCAGGGAGTTCAGCTT 1113988 36 100.0 30 .................................... TGGCAGAGATTACACAGCAACGGAAACAGC 1113922 36 100.0 30 .................................... GGGTATCATTGTATCTAGTGATGGACCTGA 1113856 36 100.0 30 .................................... ATTTGAAAAATGCACAACAGCGTTTGATAG 1113790 36 91.7 0 .........T........................GT | ========== ====== ====== ====== ==================================== ================================ ================== 30 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGAGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGATATTATCCTTAAAGGTTTGGTCGCTTCCTGAAGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCAATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGTCTAGTTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //