Array 1 1-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCQ01000109.1 Anoxybacillus flavithermus strain AF16 scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1 17 56.7 39 -------------................. TCAGACTCCAGCCGATCAACCGATCCAACAGGTTGAACA 57 30 100.0 37 .............................. ATGTACCCCATGTACATAAGTCATAGGCGATGAATTA 124 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 3 30 85.6 38 ATTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : CACCTTTGTAAAAATTCTTCAATTACTTGAGCTTTTTCGTTTGGTTTGTATCGTACCTACAAGAACCAGTATGTTAGGGTCTGGATTTTTTTGTATATACCATTTTACTTTTTCTTTAACATTTGTTATAATATAAGGTAGAGAACATCTTTCTTTCCGATTATGGTAAAGTGAGATGTTTTTTTCGTGGAAATATTGATTTCACAAAGAAATGGAGGGATTTCTGATGAAGAAATACGCCATTGTGTATTGTGAACATCAATTTGGTTCCATGGATGGAAAAACAGCGAATGGGCTTGTGCGCGATTCAGGGCTGTATGAGATCGTTGCAGTCATTGATTCGACAAAAGCTGGTCAAGATGCCGGAGAGGTGCTTGATCAAAAGAAAAATGGCATTCCGATTTGTAAAAACCTTCAAGATGCAATAGCCTCCGCAAAAGAAAAACCGAACTACTTCATCTTAGGAATTGCTCCAGCGAACGCTTTTCTCAAAAAAGAAG # Questionable array : NO Score: 7.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.28, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 59-965 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCQ01000027.1 Anoxybacillus flavithermus strain AF16 scaffold105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 59 30 100.0 37 .............................. CGTCTTCATATGTCGCAGCTGTTCTCGTCTGGTACGG 126 30 100.0 37 .............................. TGAGGATATACGACAAGGCGAAAGAGGAGGGAACGGA 193 30 100.0 39 .............................. CGTCTTTCATCATTGGGAAATGGTTGGACGAAAACTATG 262 30 100.0 36 .............................. ACTTGATTATAGCGATTAATAAGCAGAAAAATTGGG 328 30 100.0 39 .............................. TCAACTATTTCGTACCTGTCGGCCAAATGCTGACGATTA 397 30 100.0 35 .............................. CATGGTCAAGTGACTTGATCGCTTGTGTCGACTGG 462 30 100.0 38 .............................. AACAATCGGACGGAACGGTTTTTTTTTTCGGGTCGTCC 530 30 100.0 39 .............................. TTCAAGAACCAATCACCCCTTCACACATATGACATATCC 599 30 100.0 39 .............................. TACCTTTTTGCTGACGAAAGACAGCAGGAACTCACACAG 668 30 100.0 36 .............................. GTGATTGAACCGTCTTGGATTTTTGCACTTGTAATG 734 30 100.0 37 .............................. AGCGATAAAGTGTTTCCATATGATGACCTGCCATCGG 801 30 100.0 39 .............................. TCGGCATAGAACGTGCTTTCTTCCCCTTGAGGCTCTGGC 870 30 100.0 36 .............................. TTGTTCGGTGTCATAGAGTATAGTTTTCCATCATAT 936 30 83.3 0 G........................TCTC. | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 98.8 38 ATTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : CCTATGAGGAATTGAAACAATGCTGATCCGAAAAGGCCTGTCCTCAAACTCGACGCCAA # Right flank : CCTCCCTTCAAACGGTGCCAGGCACTGTTCGTAAAGATTCTGCCCGTAGTTGCAATCTTTCTTTTTCTCCTGTAAATACACGAAAGTAGGTGGCATATAAAAATGGAAATGAGTAAGTTTATACTTCATGGCGATATATTGATTATGAAAGTAAAGATTGATGGTGTTGATTATACATTTAGCATTAGGTGGAAAGCACCGAAGAAACCTTATGATGAAACTTGGGAACTTGTATCATATGCGAAAAATTCGACTGGTGAAAAAGATTTAAGTGAAGAACAAATTAGGACGTTTATGGATACAGTTAATCCTAAAATGAATTGGAATATAGCAGATTTTCAAAAGTAAACTTCTTGAACTAACGGGTGTTTAGTTTAGTAAAAGATAAAAAGAATATACATATTATACATGACTAATATGTACGTTCCTTTATTTTTTAAGGCTTTTTATAATTTAAGTCTTGATAAGCAATGGGTTCTTTTTTATTTGCTAAATTATCA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 62185-61636 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCQ01000105.1 Anoxybacillus flavithermus strain AF16 scaffold17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 62184 30 100.0 36 .............................. TATCTTGATAATGGATCACGAATCATCATCGCGACA 62118 30 100.0 37 .............................. TATTTAATTCAAAGAAATCACAAAACATTAAAAAGAT 62051 30 100.0 39 .............................. ATTTTTGATTTAAGATTGTACTTTTGTTGAAGATGTAAA 61982 30 100.0 37 .............................. AGGGGCATCAAATGGAAAGGACTACGCCCTCAATTGA 61915 30 100.0 39 .............................. AATAATTTCCGTCAAACTCATTGAATTTGCCATTGTAGC 61846 30 100.0 38 .............................. AAAACATATTCGTTGCAGATAAAGAAGATAAACGCAAA 61778 30 100.0 37 .............................. CAGGGCAACAGGAGGCACAAATGACATTTTACAGGAG 61711 30 100.0 17 .............................. TTTTCGAGAAGGAGTAC Deletion [61665] 61664 29 76.7 0 CAC...A-.........A...........A | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.4 35 GTTTATTGATAAGATATGATGATTTGAAAC # Left flank : GAAATCAGAGCTTACATTCCTGATTATGCTTTAAAATTTCAATCTGAATTAGTGAAAATCAAAAATATCGCAAAGGATATTAATGAAATAAAAGATGATGATAATGAATATAGTAGCGAATATGTTATCATTTGGGAAGTAGTGAAAGGTAATCCGAATGGTGATCCTGCTAATGGTAATTTACCGAGAACATGGGATAATTCAGAAATCGGAATTATTTCTCCAGAAAGACAAAAACGATGGGTGCGTGATTATTGGGAAAGCGAAAAGAATGAAATAATCTTTGTTTCAAGAAATGGAGATTTGATGACAGCGTATCAACGTGCAGAATATTTGAAGTCGATTTTGTAATAAAACTGTCGTCGACCTCCAATCTTGCAAAAAACCCAGGGGATCGACGACAAAGAAAATGTTGAAAAATAAAGGTTTTAGTAGGTAAACAATAATTATTGTCAATTTTTTAGTGAATTAAAAACGTTGGTATTTCAATGATTTTTGGG # Right flank : GGAGATTGTAATTAATATATAATGTTTTAAAATAATTGTAAAAGAGGTGTATAAAATGAAAATTATTGCTGTTGAGGTTAAATCAAACTTTGCACATTTTGGTACAATAAATTCTAATCATAGTACAAAATTAACATACTCTATGCCAACTAGAACAAATTTATTAGGTATGTTTGGAGCAATCATGGGATTAAATTATTGTGACGTTATTGAAAAATGGGATCATAAAATTAATTTTGCGTGGAAATGGTTAAGTGAAAATGAAACGTCTGTTATTATGGTTAATCGACACAAAATAGAACAAAATCCTTGCTATTTTAATATGATTAAAAGTAAAAATAAGAAGCTCTTATCCGACAGTCCATTTGATCAAACGTTAGATTCGATTGAATATTTAAAAGGTAAAAATGGATTGTTAAAAGGAAAATGGTTTATTATTGTTGATGAACAATATCATAATGAAGTGTTAAAGGCTTTAAAATCGCCAACATATCCAATCT # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATTGATAAGATATGATGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1659-207 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCQ01000045.1 Anoxybacillus flavithermus strain AF16 scaffold47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1658 30 100.0 37 .............................. CTTGGAATCCACAGTCAAAAACTTGGGAGCGTGTAGA 1591 30 100.0 38 .............................. CCAATCAGAACGATCATAAACCTTCCAAACAGATTTAA 1523 30 100.0 37 .............................. TCTCCTTCTTTTAAATCTTTCAAAGGAACTAGTTTTA 1456 30 100.0 39 .............................. CGCATACTCATCGACTGGGTTGGATTCACGTTAAGTCCT 1387 30 100.0 37 .............................. TATATCCCTCTGCCCCTCTTTTTGTTTTTGCGATCTT 1320 30 100.0 37 .............................. TCGCTGTCAATCTTGTGCTTTGAACAAAAGAAAAGCG 1253 30 100.0 39 .............................. CCTGCTGCGCTCGTAATATCGGCATTAACGAGCATCGCA 1184 30 100.0 36 .............................. ATGTTGAACCATTAGAACCTACTCCCCCACCTCTTG 1118 30 100.0 39 .............................. TAATATTCATTAGTAACCCTTCCTACATAATATGTGTTA 1049 30 100.0 37 .............................. CTTCCACCGCTTCTTTCATGACTTGCACCGCTTCTTC 982 30 100.0 40 .............................. CCTGCAAATGTGCATTGCCGCCGTAAAAGTTCGCTGGCCG 912 30 100.0 38 .............................. TTATTCAAGCACGCGACAACGAATAGTTCGCGATCAGC 844 30 100.0 38 .............................. TTGTATTCTCATGGGCAGAAAAAGAAAAGATGTTTTTG 776 30 100.0 37 .............................. AAGTTGATGCAAATGGTCAAATGTATATTGATTTCGA 709 30 100.0 39 .............................. ATCTGCGCCGCATCCTGTACGGTCATTGTCTCGACCTGC 640 30 100.0 36 .............................. CCTGCTTCTTTAAATCCTGTGGTTTTTTCAAAAAGT 574 30 100.0 40 .............................. TTAATTAAATTCCATACAATATTCCAATCACCTCCAGCAA 504 30 100.0 38 .............................. CCTGTAAAGCGATAAACGTTATAAATAAAAATCTTTTC 436 30 100.0 36 .............................. TTGAGAATCTTTCGGGGCGAATGGAAAACAAGCTGT 370 30 100.0 36 .............................. AGTATTCATACGCTCTTTCTGGGCTTGTTATTTTGG 304 30 100.0 38 .............................. TTTCTCAAACGGATAAGCAAATAAATAAAGTGATTCGT 236 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 22 30 100.0 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : ACGTTGGATGGAAAGAAAAAAACACAGTTTTTTGATCCGGACGACGAAGTGTTTTCACATTTAATAGAACGGAATTTTTATAACAAATATGAAGCATATTACGGTGTTCCACCAAGCGATCGGCTACTCATCGAACCTGTCGATGTTCGAAAATGCGATCGGGTCGTAACGAGCTTTAAAGGCTTTTACATTACAGCGTGGAAAGGGCGGTATAAGCTCATTTCTTCTCCGGAAAATTTAACGTTTTTGTACCGTGTAGGTATCGGTGGACGAAACTCACAAGGATTCGGCATGTTCCGCATCATAAAAGAAAAGTGAAACATTTCACAGCTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGTGATATCAATAAATACAGAGTATTGACTGAATTTTCGGATGGATATATAATAGAGTTGTATAGCTTTTCCATATGTTGATTTATCAACGCTTTTTTGGG # Right flank : CTCGTATTGGTCACTAGTCAGCGCTTCTACAGTAAAAAGTTTGTATAGTACTTAGTTAGTTTGACGTTGGCGGTATTGTGCTTGTCCCTCTTCACTTTCTATATACATCCAAATTGGCATTTTAACCTCTGATTTACGCAGCACACCCGATGCGGCGTAACACCTCATCTGGGTGCTGTAAGACGTGCTGTTCAAAGCGAGTAATGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 11009-10648 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCQ01000045.1 Anoxybacillus flavithermus strain AF16 scaffold47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11008 30 100.0 35 .............................. GCGGAGGATAAGAAAGAGCTTCTACAACAATATGC 10943 30 100.0 35 .............................. TTGGAGTACAAGAAGCGATATGATGAGGCTATGAA 10878 30 100.0 36 .............................. TGCTCATATGGTATTGAGTTTAGAGACAGCTACATT 10812 30 100.0 38 .............................. CTATACAAACACGAATCATCGAAAGTCAAGTAAAGGAA 10744 30 100.0 37 .............................. ACGACATTTGTTCAACTTTTTCATACCATATTTACAA 10677 30 80.0 0 ......................G..TGCCA | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 96.7 36 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GATGCTATGGATGACATTTATCCTTTACTTGTCCGCTTGTTTCCGATGAAAAAAATAAAGGACAATCAAGTCGATGAATTTGCTCGCTATTTAATCATTAACTACCATTTTGGAGTTCATATTATTCATCGTGATTATGTAAGAATATGCTATGAAATTCGCTCTAGAGATCGTCTTGTTTGGGTAAATATAGAAAACAAAAATAAGAATTCATGCACATATGTACAAGGTGATTTGAATTTATTTGACGAAGTGTACCATATTTATATTGAATTTGAACGTATCATAAGTAAAGTACTGTAAAATCTACTTATTGTGAATTTATTCACAACTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGTGATATCAATAAATACAGAGTATTGACTGAATTTTCGGATGGATATATAATAGAGTTGTATAGCTTTTCCATATGTTGATTTATCAACGCTTTTTTGG # Right flank : TTGTGATCAGTTTTATATTTACTTTGTAATGTTTTGTGTTAGGGGTAGTTTCCTTAATTTCCTACTAATCCTTTTTATTTTTTAGAGCGCTGGTCAGCTATCCTCAACCTCTGTTTTTATGTTACTTATTTCAAAGAGTTATATTAATTTAGAAGGAATATATTCCTTTTATGTCGTATTTTATGGTAGGTTAGTTTATTTAGAAACGAGGTGTGATTTTGCTAGCAGAAGCAGTTGTTCGAGTAGGCGAGTCGCTTGTGAGTAGTGATTTACCTTTAACGGAGCGTATTCGTTTGTTAACGGATGTAGATAATGAAGCTTGCAAGAATTTTTTTGAGCACGTCTGGGTTGTGGAATGCATAGAGGAACAAGTGAACGTTCGTTTGATGAGAATAGGAGAAAAGGTGAAGGAAGGTAAAAAAGAAACGTTTGTTGTTGATAGAGCTAAAAACGTTGCCTTTCCTATCATTTATCCTAATGGTGGGAATCCGCTAAATGCC # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 25927-24750 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCQ01000045.1 Anoxybacillus flavithermus strain AF16 scaffold47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 25926 30 100.0 38 .............................. ATTCTATTTAGTGTTTGCTTACGTCTTTCAATTTGTTT 25858 30 100.0 34 .............................. CCAGCTGAAGCATGATATACCCCCCATGTTTTTT 25794 30 100.0 38 .............................. CTATAACCTTATCTTGACCTTTAACATATTTTATTTTT 25726 30 100.0 38 .............................. TGCGACTCCCCCCCTCCTTATAGACCTTTATTTTTTAA 25658 30 100.0 40 .............................. ACGGCCTTCGCGATCTTGTTGGCGGTTGGATCAGTTCCAC 25588 30 100.0 38 .............................. GTGGATGGTTTAAAGAGGTCTTTAATGGCTTTTCTAAG 25520 30 100.0 38 .............................. ATGTACAAGCGTTAAAATGTACACAAAAGGACATGAAA 25452 30 100.0 38 .............................. ATAATGTGCAGGCTCTAAAACAAGCTGTCGACTATGTA 25384 30 100.0 38 .............................. CACGTATGTTTCGATAGAGGAGTCATTTAATTCTTCAA 25316 30 100.0 38 .............................. ATAATTAACTCCGTATCTCTGCACTGCGGACACTCATA 25248 30 100.0 38 .............................. AAGTCATACGTAGTTGTTGCCATCTATATCCCCTCCTT 25180 30 100.0 40 .............................. GGCGATAAGCTAACGTCAGCACACCGCGAAGCATGTGTAG 25110 30 100.0 36 .............................. ATTGCTTCGTTTTTATCTACAAATATGTGGGCAGAA 25044 30 100.0 39 .............................. TAATTAAGGAGGTGCACTTACGTTAAGAAAAAGTTTCTT 24975 30 100.0 36 .............................. TCGAGCATGATGTTTTCATTCGCATCCTGTCTTGTG 24909 30 100.0 36 .............................. TCCGTTGCCCAACTTTCTGAACCATCACTTTTTACG 24843 30 93.3 34 ..C..........................T AATGGAATCACAATGTTGCCTCCTGCTAGATAAA 24779 30 80.0 0 A.......................A.CGTT | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 98.5 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GAAGCGATCGATGCAACAAAGCGCCCGCTCGTAATCGGAGGTGTATTCGTACTTATGCTTGCATCGATCATTTTCTCTCACCGCGCCAACACATATTTGCGCAAATTAGACAATGAACAGTAAATTCCCCTGTTTTCGTACAAAGAAAAAACATGTAAAATAAAAGAAAATGGGTAAAGGGGGAATAAACGATGATGTGGATGATTACAGGTCTAGTCATTACAGCTGTCATCGGTTTTGTTATTATCGCGGAAGTGAACGCCGAAGCATAAAACAGTCTCTAAACAGGAGACTGTTTTTAATAAAATTTATTTGTGATAAACTTCACAACTGTCGTCGACCTCCAATCGTGCAAAAACTTCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGCTGTATCAACGGACATAGACTATTGACTGAATTTTCAAATGTATGTATAATGATGTTGTATAGCTTTTCCATGTGTTGATATATCAACGCTTTTTTGGG # Right flank : TTTTGTATTGAAAAGCAGGGATGTTTATGCCCTGCTTTTATTTTTTTGTTACAACTTTCAGAAAAGTATTGCGCAAAAACTAGTTCGTTTGTATCATCAGTAATATGAGGATATTTTTTGAAAAGGTGGATAAGGGATGAAACTACTAACATTTCTCGGCGCGAATGACTATCGTGAAACAACGTATCGTTTTCGGGAGCGTGTGCATACGGCAAAGTTTTTTCTATCTGTCCTTATTCAAGAACTGCAACCAGGTGAAATATACGTATTTATGACAGATGGGGCACGAGAGAAAAACGAAGCACCGTTGCTTGACGAATTAAACCGATACGGCGTAGATGAAAAGAAAGTGCATGCTGTATGCATTCCCGATGGGCAAACAGAAGAAGATTTATGGAATATTTTTTCTGTTATTGCTGATCATGTGTATGAACATGATGAAATCGTCCTTGATATTACGCACGGATTTCGGACGTTGCCGCTCGTTGGAACAATTAGTT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //