Array 1 60616-59698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYE010000025.1 Streptomyces sp. RK74B RK74B_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 60615 29 100.0 32 ............................. CTCGAACGAGGGAGCAGGCCATGAAGTACTTC 60554 29 96.6 32 ............................A CAACGGGGCCTGGCAGCGCCCGTAGCCGTGCC 60493 29 100.0 32 ............................. TCGCGGCGGTCGCGCACGCCGAGGAAACCGCC 60432 29 100.0 32 ............................. AACCCCCGGCAGCTCCGCTCGAAGACGTGCGG 60371 29 100.0 18 ............................. GCCCACCGTCCGGACCCT Deletion [60325] 60324 29 100.0 32 ............................. GTCGCCGAGATCATCGGCGGTGTCTTCAACGC 60263 29 100.0 32 ............................. GCGACCGAGGGCTGGCGCCGCGGGGACCGCTG 60202 29 100.0 32 ............................. TACAAGGAGTGGTCCGACGATCTGTCCGGCGA 60141 29 100.0 32 ............................. TGGGCCACGGTCAGCGCGAAGCCGTCGCCGCT 60080 29 96.6 32 T............................ ACCGCTTGCCCGGTCTGGTGCCCAGCGCATGG 60019 29 100.0 32 ............................. GCGGTACACCTCCGCACCGTCCTCGCCCACCC 59958 29 96.6 32 .......................A..... ACCGGTCAGGGCGAGGATCGGGTCCCACCAGT 59897 29 93.1 33 ...........G...C............. TACCTGGCCCCAGACGGGCAGGTCGCCGCGAAG 59835 29 89.7 32 .............AT.........A.... TGCTTCAGCCACCACCTGTACGCCGAGCCGTA 59774 29 89.7 16 ..........T...T.........A.... GCTCTCCTGATCGAGG Deletion [59730] 59729 29 79.3 0 ...GC.....T..GTC............. | TC,T [59709,59718] ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.3 30 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GTCGCCTCCGGCACCAACTACGACGGCCCCGAGGACTACGGGGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGCCTGCGCGGCTTCCTCACCCGCTGGCTGCTGGAGATCTCCGCCGGGGTCTTTGTCGGCAACCCCTCCGCCCGCATCCGCGACGCACTCTGGGAAGAAGTCCAGCAGTACGCGGGCCAGGGCCGCGCCCTGCTGGCTCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACGCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCACCGCCCCGACCCCAACGCCCCCGGCCCAGCTCCCCAGAACGGACCACCATCCGGCTGGAGCAGAGCAGCCAAACGCCGACGCTTCGGCAGAGGCTGACATCTTGAGTACCTTATAGCCGATTTGTCAGAATCAATGAAGATGCTCGAAAATCGTCTCCGGCGTCAGCAAAAACGCAGGTCATCCAGT # Right flank : CGGGTGGCCCACGCCTTGGAGTTCCGGCCAAGGGCATAAACGATCACCGGCGCCAACGCGGGGACAACCTCGACGGATAGCACCGTGGAGTTACTTCCTGCTCTGCTCCCTGGACTGCGTCGGCTGCGGGGGCGCGACAGAGGCCCGCTGGTGCTGCACCGTCAGCTTGGGCTGTTCCTGCCGAAGGGCGAGGCGTCCCGTCGTCTCCCGGTCGTGCAGGTCGGGGAACTTCTCGGCGATCGTGCCGCGCAAGGCATTCTCGGTGCGGGCGTGGGCGGCTTGGGCGCGGCAGCTGGCGGCGAGCTTCCGGGATTCCCCGGCCTGGCGGGTCGCGCGGCTGACGTCGTCGCGGTCGCGTTTGTCGATGCTGTGGCCGTGTCGGGCGGCGGTGGAGCGCATCTCGAGGAACCGTTCGACGGCCGTGTCCGCGCGGTCGGGCACCTGCTGACCTGCAGCGCCGAGGGGCTGGGCGATCTGGCTGTCCCGGATGGTCTCCCACG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70364-70883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYE010000025.1 Streptomyces sp. RK74B RK74B_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 70364 29 100.0 32 ............................. GCGGTGAGGCCCCGGCGTCGGCACAGACACCG 70425 29 100.0 34 ............................. CCGGACGCGAAGGCGTCCAGCCACTTCGGCACCG 70488 29 100.0 32 ............................. GAGCAGTGGCAGCGCCGGGCCGTGCAAGTCCT 70549 29 100.0 32 ............................. TTCGCGCTCGCCGCGGCCGCCGGGGTGGGCAC 70610 29 100.0 32 ............................. CGAGCCCCCGCCGGGATCAAGACGGCGGGGGC 70671 29 100.0 32 ............................. TACCGGCCTGTTCGTGGGCACGGCGCCGCTCC G [70692] 70733 29 100.0 32 ............................. GGAGAGCGCGTCTTCTTCGGGTGGAGCGACCG 70794 29 100.0 32 ............................. TCCCGCGTGCACCGGGGGACGCTCGTCCCGGT 70855 29 93.1 0 .......................A.C... | ========== ====== ====== ====== ============================= ================================== ================== 9 29 99.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGGCAAGCGAACGCCGGGGTGGCCTTGCCGATGTCGTGCACGCCCGCGAGCCACACGGCAAGTACACGCGCGTCCGACTCTCCTCGAGGCATCGCCTCGGCGATCAGCCGCCGCACTGCTACGGGCAGCCACCGGTCCCATAACAGGCCCGCCACTGCGGCACTGTCCTCCATGTGCCGCCACAGCGGGAGCCACCCATCGGTCTTACGGTCATGCTTGGCCCACACGGCCCTGGCCGGCTCCCCAAGCCGACGCAACAGGCCGGAACGGGTGTTCCCCCCATCACTCATGAGTGATTCATACAGGGAAAACCAGGCTTGCCCCATCAAAACCAGCAAAGAGGAGAGTCGGCCGAGAGGCAGCACTTCCTACTCATAGGATGATCGGCTAACCATGGACGTGTCTACGGAACCTACCCTTCGCTTCATGTCCTATTTGTCGGAATCTCTAAAGCTTGCTGAAAACACGCCTCTACGGCCATGAACTCGCAGGTCAAACAG # Right flank : CAGCTCCCGCATCGACCCGGTCGCCCGGCGGAGGCCCTCCGCGGAGGGCTACGCGCCGTCCACCCGCGCCGACGAAGCAGTCGACGCGATCTCGGACGAAGGAAGGGGCACCGCAAAGTCGTACAGCCGCCCCCGGATGTGGTGAACGAGCGGGGAGTCCGGGCCGTGGATGTCAGTGGCGACGGTCAGTAGGGCGGCGCCAAGGCGCTGTCGGTCCGGCTCCGGCGGAACGGATCGCCACAGGCTGTAGGCGCGGCGGGTGGCCGCTTCGACGTCGGGGTGGCCCGGGCCCTGGATGGTGACGCGCAGCTGCGCGGCGTGCAAGTACCAGGACAGGCCCGACGCGTGGTCGCTGGCGAGGGCAGCGAGGTAGCCGCGTACTTCGCGGACCTGGATCGTGTGCAGATGCAGTTCGCCGTACTCGGCGGTGGCGTCCTGGTCGATCCGGGCGGCGAGGGCGGTGGCGTCTGGGAGGTGGCCGGCCCCGGCGATTTCGGCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 87600-88406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYE010000025.1 Streptomyces sp. RK74B RK74B_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 87600 29 100.0 32 ............................. GCCGGCGTCAGGAAGCGCGCCGTCCCGCTGCT 87661 29 100.0 32 ............................. GAGCAGCGCGTAAGTGCGGGCGCTCTCGTTCT 87722 29 100.0 32 ............................. TCGCTGACCTGCGGTTCGTCGTCGAAAAGCAA 87783 29 100.0 32 ............................. GCCATCACCGTCGGGAAGATCGACGCCGGGGC 87844 29 100.0 32 ............................. GTCTACAACCGGCATGTGTGGCAGCTTGCAGA 87905 29 100.0 32 ............................. GAAAGGGTCGGCGGCTGCAGGTAGGCGTTGGC 87966 29 100.0 32 ............................. GCGCTCGGGATCTGGGCGGGCAGCCGGGATTC 88027 29 100.0 33 ............................. CACGTGAGCCGTGCCCCGTGCTGCCGGGCGTTC 88089 29 96.6 32 ...............A............. GCGCACCTGGTCGAGACCGGCGCCCAATACGC 88150 29 96.6 32 ...............A............. GCGACGCGTGTCCGGTGCTGGTTGGAAGGTGA 88211 29 93.1 32 ........................T.G.. GACATCCTGCGTCAGGCCATCACGGCCCTCAT 88272 29 93.1 34 ........T..........A......... GCGTACAGGCGCCTGGCCGGCTCACCCTCGCCGA 88335 28 75.9 14 ........T.....G..A...-G.CA... GGCGGCCCTTACAC C [88345] Deletion [88377] 88378 29 79.3 0 ...T......TC........A.A.C.... | ========== ====== ====== ====== ============================= ================================== ================== 14 29 95.3 31 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCCGCTTTGCAGCCGTCGACGTGGACGCCCTGCGGGCCATCGCCACGCTGGCCGAACACCATGGCGGACGACTCGCGGTCACCCTGCCGCCCGGCCTCACCCACACCGCATCCCACCGGGCACCGGGACCGCAGAGGTCTACCTCGTCTTCCAGATCACTTGCGCTGTCATCGTCACCGTCGGCAGTCCGGTCCGCGTCGACAGCGTGCCCAACCCCCACGTTCCGGGGCCTGCAGTGACCCCGAGCCGGGGGTGGGCCCAGCACGGTGAGACCGTTCGCGTGCTGCGGGACCTGGCGCGCCCATCACCAGGGTCGGACAGGGCGCAGGGAGGACCGCGTGTCGCCACAGCCGCAGCCTCCGCTGAACGGCCATCGTTCCTGCCACCCAGATGCTCGTACACGCCCTATGGAGACCCACTGCCAGGTGTCCGATTTGCCGGGTTCTGCAAAGCTTGCTGAAAACCCGCCTGCGCGCCCATAGAATCCCAGGTCAGACAGT # Right flank : CACCCCGGTCCTCGCAGTCGGCGATGGGACCCTCGGATTCTGGTAGGCCATGGCCGAGGGTTTCTCTGCCACTCGGCATAAGAGGCGCTGGGTTCACAAGATTGCCAATGTCGCGAACGTCCTGCCAAAGTCCGCCCAGCTCGCCCCCATCGCATAACGACGGGGGCGAGTGCTGTCAGGGCCAGGGATCGGGCCAACGGCGTCGGGTGATTCTGTCCGGCCCCTGCTCTTTGCTGGGCTTAGCTGAGGGTTTGGAAGTCGAGCCAGCCGCCGGTGCCGACGGATGTGGGGGTGCCGTGTCCTGTGGTGGTGATGGCGGGGTAGAAGTAGAGGCCCTTTCCGGTGTCTGGGCTGGTGGCCCAGAGGTCTGGTTTGTTGTCGTTGTCGGCGTCGCCGCCTGAGGTGATCAGCGGTCGGCTTGTCGGGGTCCAGCCGTGTCCGATTTCGGTGCGGGTGGCGCCGACTCCCAGGCCTTCTCCGGCGGGGCCGGTGCCGGGGTA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 111037-112409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYE010000025.1 Streptomyces sp. RK74B RK74B_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111037 29 100.0 32 ............................. GCCGCATACAGCTCCGGCAGCATGCTGATGCC 111098 29 100.0 32 ............................. GGCAACCTCACGAGTTCGGGCTCGTGTTCGCC 111159 29 100.0 32 ............................. AGCACCGCGACCACGCACAGCGCGGTGATCGG 111220 29 96.6 33 ............................A CGCCGAGTTCGACCGGACCGTGGTCCTGGGCGA 111282 29 100.0 32 ............................. AGGATCCGATCGCCGCGCCGGTAGCTGTCCTG 111343 29 100.0 32 ............................. CTCGAGCAGTTCGACAAGCTCGTCAACATCCA 111404 29 100.0 33 ............................. CACGCAGCGCGCCCGGTCCGTGGATGGCCCGCT 111466 29 100.0 32 ............................. AGGTCAGCCCTGGGGGCGGATGAGTTGACGTA 111527 29 100.0 32 ............................. TTCGCGAAGTTCTCGGCGGTCACCGAGGCGTC 111588 29 100.0 32 ............................. GTCTGCGCGAGGTGGTCGGACGGCTTGAGCGG 111649 29 100.0 32 ............................. GTTCGGTGGTGACGTGCGGCTTCATGAGGTCA 111710 29 100.0 32 ............................. AAACTCACTGCACTGTGTAGTTAGTTCAGTGA 111771 29 100.0 32 ............................. AACGGATCAGACACGGCGGCCGCTGTCATCAC 111832 29 96.6 32 ............................T GCTATACCAACCAAGGGGCCGTGGTCTAGGAT 111893 29 96.6 32 ............................G GTACCCCGCACGCGCTCCATGAGCGCGTGCCG 111954 29 100.0 32 ............................. CCGGACCGTACGCCCGCCCTTGGGTGGACTGA 112015 29 100.0 32 ............................. GGCCGGGCAGTCTTCACCGCGGCCAACGGCTG 112076 29 100.0 32 ............................. CGGTCGACGATGGTTCGCAGGATGCTGCGGTG 112137 29 96.6 32 .........................C... AGGCCCTGCGCTCCGACGGCCGGGTACCAGGA 112198 29 100.0 32 ............................. ATGACGCTCGGGTTCACTGCGATCGAGCTGAA 112259 29 100.0 32 ............................. GGCAAGCCCTACCAGTGGGGCGGCAACGGCAA 112320 29 96.6 32 ..............T.............. AGCGCCTTCCACACGCCCGGAAAGTCGATCGT 112381 29 93.1 0 ...............A.......A..... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCCGGACCGGCCGCGGTTGAAGGTGGTGACATCCCACCCTCTCGCCAACGCGGTCTCCACAATCGCCTTGCCCAGGAACCACGTTCCGCCCATGACGAGAATCCTCATGCCCCTGATCCTGCCCTGCCCGGGGCGCGGACGACAGGGCGGGCGGCGCCGCCGGCCGAGCAGTGAGTGCAGGGGCTCGCATGTCAGAGGCGACTGCAATGCTGGGAGGGTGATCGGTGGCCCCCTGGAAAACCTGCTCGACGTCGACAGACGGAACCCTGTGCACGCCAGCTGGGCTGCCGACACCAGCAGGTGAGCTCAAGCTGACGCCCGAGCGGCTCCACGCGGGGCTCATCCAACACTGTGCGAGGGAGGCCCTTGTTCAGCGGCGGACGATAGGTCTGCTTTGAAGTGCCCTATGGATGGACACCCTTGCATGTCTCATTTGCCGGATTCTGCAAAGCTTGCTGAAAACGCGCTCCTACGACCGTAAACTCGCAGGTCAATCAGT # Right flank : CCAACTACGAGGGGCACGGCTCCCGCTTTCCAATGGGCAGCCGGCGATGCCCGGCAGGTCAGGGTGCCGCGGTGTCGTCCGGGCAGGCGGTGAGAAGTGCCCGGGCGCGGTTTCGGAGGGCTTTGTCCTGGCGAATGAGGCGATCTTCGACTCCCGAGCGGACCACCCGGGCGTCGCCGTCGGCGAGAGCGGCAAGTCGGCGCGCGTGGTCGTCGGTCAATGCGTCGGGGCCGAGTGCTTCCAGGGCGTCGCAGGCGCCTGCCGGATCGGCATCCGATTCGGCCGACCGCAAGGCGGCCTCGGCGAGCGTGGTGCGGTCCAGCGAGGCAGGTTCGGCCACGGCCGTGAGGGCCAGCACCGCGGCCGGTGCCTGTACCGGATCGTTCAGGGCGGCTTCCAGGTGGGCGGCGAGCGGCCGTCCCGCGGGGCCGAGGAGGGCCGTCGTACGGGCGGCGCGCACCACCGACCACTGGGACCAGGGGTTCTGTTTGGCGCGTGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //