Array 1 159778-158039 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYY01000004.1 Pseudomonas aeruginosa strain AZPAE14372 AZPAE14372_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 159777 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 159716 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 159655 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 159593 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 159532 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 159471 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 159410 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 159349 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 159288 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 159227 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 159166 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 159105 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 159044 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 158983 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 158922 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 158861 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 158800 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 158738 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 158677 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 158616 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 158555 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 158494 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 158433 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 158372 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 158311 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 158250 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 158189 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 158128 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 158067 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 170077-168950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYY01000004.1 Pseudomonas aeruginosa strain AZPAE14372 AZPAE14372_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 170076 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 170015 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 169954 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 169893 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 169832 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 169771 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 169710 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 169649 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 169588 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 169527 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 169466 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 169405 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 169344 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 169283 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 169222 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 169161 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 169100 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 169039 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 168978 28 79.3 0 A..........A..C.....-..A....T | C [168969] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //