Array 1 65884-63019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFGM010000016.1 Candidatus Roseilinea sp. NK_OTU-006 Naka2016_392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 65883 36 100.0 37 .................................... AAAATGCTCAGTTTAAACCCTCGTATCATGCGAAGTG 65810 36 100.0 37 .................................... CACTTCTCCGCCTTACTACAATGCTCGCCCTGAATAT 65737 36 100.0 37 .................................... CTCTCCAGTTGCGGAAAGCCCGCTCCAGGTCCCGGAA 65664 36 100.0 38 .................................... AGCAACGGCGCATCGATCCCCACCGGCGGGCCTGCGTG 65590 36 100.0 35 .................................... CAGGATTGGGCGTTGGCCGATGAGGATGGCTGGAC 65519 36 100.0 36 .................................... AAGTCCGGCGGCAAATGTCCATGCTTCGCTGCGACG 65447 36 100.0 36 .................................... GAGCGGTGGGAGTTGGCCGATAAGGACGGCGAGACG 65375 36 100.0 37 .................................... GCCGCTTCGTGCGCCACCGTCCGGCCCCACTTGTCGG 65302 36 100.0 36 .................................... GCACAACGGCGAACGTTTCAAGTCCTACCTGACCAG 65230 36 100.0 36 .................................... ATGACGAGATGCGCTTTGCCGTTCATCGCGGGGTCG 65158 36 100.0 38 .................................... GTGTTTACGGGGATAGACAAGGTGTGCGTGTTGCAGCG 65084 36 100.0 36 .................................... TAAACGACTTCCTGCGCCAAACCTCCACCCGGCTCG 65012 36 100.0 35 .................................... AACTGTCTCGCCATCCTCTAGCCATTCCTTGATGA 64941 36 100.0 36 .................................... CTTGGGCATGACACGACTATCTCAAAGTGATAAGCG 64869 36 100.0 37 .................................... ATAGTTGGGGCGAGAAGGTGATGAAGGTCTGCCGGGA 64796 36 100.0 35 .................................... TGACCTCGTGGTCAACCGAAAGCCCTTCGCGATCA 64725 36 100.0 36 .................................... CTACACCGTGGACGGGAAGCCGCTTGGCGAGAAGAA 64653 36 100.0 37 .................................... CCGATGCGGGGCAGCTGCACGCGCCGGGGCGTCACCC 64580 36 100.0 37 .................................... GCGAGCAGGCCGAGAAGCCCGGCATCTGCGACAGCAC 64507 36 100.0 36 .................................... GCTTTCGCGAGCCGGGTGGGGGTTTGACGCAGGAAG 64435 36 100.0 37 .................................... GCCAATGCGGGAGCGCTGGGCTTCAGCACAGGCGCTG 64362 36 100.0 35 .................................... AAACCACGCGCGCAGCAACACCACGCGCTTGGCGG 64291 36 100.0 37 .................................... TGCCGACTCCTGCGCAACACGCAACGGAGATAACCCG 64218 36 100.0 35 .................................... CCGACTCGCGTGTGCACAGCATTGTTGCAGACTTG 64147 36 100.0 37 .................................... TCCCGTGGCCACCAGTTTTAGTTTCATCACGAGCGAC 64074 36 100.0 37 .................................... GTACTCTTCTGCTTGCGCTTCAAGCGAACGCGCGCGG 64001 36 100.0 37 .................................... TTGATCAGGCGCCTCAACTCGCCTTCGGCAGCGAGCG 63928 36 100.0 37 .................................... ATGTACGTGATGCGTGACGCGCGATTGCACGCTTCAC 63855 36 100.0 37 .................................... CGATTCGAAAAGCGTGCGGTAGTGCTGGATGGCCAGG 63782 36 100.0 35 .................................... TGCGCCGCCTACCAAAAAGACGTCGGGCGGAAGAA 63711 36 100.0 36 .................................... TTTTGCGTCGCCTTTTCGTCCGGCGTCGGAATCAAG 63639 36 100.0 36 .................................... TCGTCGGTGCCCAGCACCAGAACTCGCCAAAGCAAG 63567 36 100.0 36 .................................... CATTGGGCAACGTCGTGGCGAACGTGGCCATGTCAG 63495 36 100.0 39 .................................... TATGTCGTGCTTTCTGCTTTGGTGCAGCAGTTGGTGCAC 63420 36 100.0 37 .................................... GGCGAGACGGATTTTCTAGTTCTTGTGCGCTCGGCTG 63347 36 100.0 35 .................................... ACCGCACACCGCTGCACGCTGCCTGCCGCCGCGCC 63276 36 100.0 37 .................................... GCCGATAAGAAAGGTCGGACGGTGGCGCATGTCGCAG 63203 36 86.1 37 ..T.........AAC..............C...... GCCGATAAGAAAGGTCGGACGGTGGCGCATGAAGCAG 63130 36 94.4 38 ..T.........A....................... ATCCTCTGTGGTCCGGTGCTAAAAGCACCGGACCACAG A,A [63112,63117] 63054 36 86.1 0 ..T.........TGTT.................... | ========== ====== ====== ====== ==================================== ======================================= ================== 40 36 99.2 37 GTCTCCACGCCTGCAAAGGCGTGGCCCCATTGAAGC # Left flank : AATACTCCGTGTTCCGGTGTGCGTTGTCCGACCGCGAGCGGGTGATGCTCATGGAGAAGCTGGCGCGCGCGATCCACCACACCGAAGATCAAGTGCTGTTCTTTCCACTCGGGCCGGTGGGCGGTGTAGATGAACAACGCATCTACGCAGTGGGTCGGGTCTACCCACCGCTGCGCCAGGGCGCCGTTATCGTCTGAGGCGCCGAGGCGAGGCACTTTACCAACCGAATAATCATCGTTCATAGGCGACGTTCCGGCTGCGAGCGGCGCGGTGGCGCGCCACTGCCGGGGGATCGCTCGCACGCGATGCCTTCATTAGCTTGTGAAGAGCACGACTCACCGCAGCCATGTTCCCCGGACGTGGGTGATGCACTGCTCGAACGGTAGGAATTGCAGCATCCGATGGAGTCGGAAAGTGTCTTCGTTGCGCGGCCAACTGCTCCCACAATCGTGGGGTGTCGCCCGTTGGATGCACGAATGTCTCCCACTTCGAGTGATGCA # Right flank : CCGACGGCGCAACAGCGTGCAATGCCAGCGCTGTTGGGCTTCCGGTTGGTGTTCGGCGAGTAGGCGGCGCTCCCGCGCATTCCCCCGCTCGCGCCCTTGAATCTGCTACCCGAGGCGCCCAGCCTCGGCGCCATCCTGAACCGACATCGGCTCACTCGTGCGACCTTACTCGTCGTGGTGCCGTTGGCGACGAGGACGATGATGGACGAGTTCATGCAAGCGGCAATCGAGGAAGCCTGCCGTGGGCTGGCTGAGGGCGGCATTCCGATCGGCTTGGTGTTGGTCATTGACGGCAAGAGCGTAGGATGCGGGCACAACCGACGCGCGCAGAAGGGCAGTGCTGTCTTGCACGCCGAGCGGCTTGCCCCCTCGCGATGCGGCGTGTTGGCCTACGCCGGCCCAATGTGCTCTTGGCCAAAGTAAAGCCGCGCCGCGTTGCGGTGCAAGATGTCCAGCGCGGCAGCGTCCGCTTCGGCTGCCGAGAGGTCGCCGTCGGCGAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACGCCTGCAAAGGCGTGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.70,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 38024-34307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFGM010000028.1 Candidatus Roseilinea sp. NK_OTU-006 Naka2016_695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 38023 37 100.0 37 ..................................... GCAGCGTTGCTTGTGCGTCGAGAACGCCGCGCAGCAG 37949 37 100.0 35 ..................................... AGCAGCTCTTCCGCTGACTCGGCGAGGCTGATTCG 37877 37 100.0 39 ..................................... CTTTGGCGGCAGTTGGTCGAGCACCTCATCTTTTCGTCG 37801 37 100.0 38 ..................................... TGCGGGAGTTGCAGAGCTGTTGGCGCAAGCCCCGGCGA 37726 37 100.0 36 ..................................... TCCCGAACGGACTGGGCGATATGCCCAGTTCATCAG 37653 37 100.0 37 ..................................... TGATTGCGGACACGCCTGGTAGCGTTATGTCCTCGCC 37579 37 100.0 36 ..................................... AGTTGTCGGTAAGGATGGCCGAATTCGTCAATTTCC 37506 37 100.0 36 ..................................... GTATCCCGGCAATCATGGCATCTTGTGCCATGTCCT 37433 37 100.0 37 ..................................... TAGATGACGATGAGCGCCGACACGACCGGCTGTTCGC 37359 37 100.0 38 ..................................... AACAGAAAAACAAAACGGGTGCCGGTGAACAACCGGCA 37284 37 100.0 37 ..................................... ATGTAGTCGCGCTCAAACTTCGACTCAATGACACTCA 37210 37 100.0 35 ..................................... TTGGAATACGAAAATGACGTAGGCTGCTGCTAAAG 37138 37 100.0 36 ..................................... AGTCTTTACCAAACTCCGCTTGAAACGTCCCCAACT 37065 37 100.0 36 ..................................... TCCGAGAGGGAGGGGGATGACGTGCCATGCTCACGT 36992 37 100.0 37 ..................................... AGCGGTCGAAGCCCGGCGGCAAATGACCCCAGCGAGC 36918 37 100.0 36 ..................................... GATTGCAGCGCGTCCACTTGCGCCTGTCGCTCCTCA 36845 37 100.0 37 ..................................... CCCTTGCGCCTGCGGATCATGAACCGCGAACGTAGAT 36771 37 100.0 35 ..................................... CCGAACTTCGACCGCTGGGAGTTGGCTGATAAGTG 36699 37 100.0 38 ..................................... ACCAGGCCAAGCTTTGCGAGTTGCTCCTCCGGTACGTC 36624 37 100.0 37 ..................................... ATGTCGTCAGATGAGACACTGCGCACTAACGCGCTGA 36550 37 100.0 36 ..................................... GCTTCGTTTGCAACGAACAAGTCGAGGCCGCTGCCT 36477 37 100.0 36 ..................................... GACACTAGCCCACGATGCGGCGGAGTGCGGAACACT 36404 37 100.0 35 ..................................... ATGCTTTTTGTCGGCATGGCGATCGCCGACTTGTT 36332 37 100.0 37 ..................................... GTCAGTGCAATGACTTGCTTCGCTTGGCGTGCAATGG 36258 37 100.0 36 ..................................... CCAAATATGGCTCATCATTGGGGAGGTTATCCCCCC 36185 37 97.3 37 .....................G............... CAGAGGGCATTTCGTTTTGATTGTAGTCCTCATCATA 36111 37 100.0 39 ..................................... TCTTGCTGCACAGCGCTAGGCGAGGCATTAGCGCACGCC 36035 37 100.0 37 ..................................... CGCCCACCCCACATCCCAAGTCTTGAGTGCGGCTTTT 35961 37 100.0 35 ..................................... ACTGGCTTGTATGTGCCGCCGCCGCCGTCTGCATT 35889 37 100.0 37 ..................................... ATAGCGCGCAGCGCATCATTGACGCTGCGCACTACAT 35815 37 100.0 36 ..................................... ACGCTGCGCGCCAAAGCGCTGATTTCGTTGTTTGAC 35742 37 100.0 39 ..................................... TTTGGCGTGGGAATTTCGAGGTCAGACGATGTGGCATAG 35666 37 100.0 36 ..................................... CTCATGCGCCCCTGCGCATGCACCGCGGGCGAAGGA 35593 37 100.0 36 ..................................... TGGTCAACGACCAAGTACTGCACCAGGACGGTCTCA 35520 37 100.0 37 ..................................... AGCGGTCGAAGTCCGGCGGCAAATGACCACGGCGAGC 35446 37 100.0 38 ..................................... GAATGTCATAACAACCGCCTCCGCCTCACTCTTTCCCC 35371 37 100.0 36 ..................................... CGAGTAGAAGCGGCCTTCAGGAGTGTCAATCACTGA 35298 37 100.0 36 ..................................... TTCTGACGAGTTTCGACCAGCCAGTACTCGTAATCA 35225 37 100.0 37 ..................................... CCCGTGCGCCCATCTCGCCGGAGCGGTTCCGGCAGTT 35151 37 100.0 37 ..................................... CGCGCTACCGCGCTGATTTCGTCGTCTGACATTTGCT 35077 37 100.0 36 ..................................... GCGTTCGCCGCAGCCGCGAGCAGGTCGGCGACTCTT 35004 37 100.0 37 ..................................... TTACTGATCGGCGTACCGAGCAGCAGGTTGGATGGGT 34930 37 100.0 37 ..................................... CCTAATCACTTACTCACTCTGTGATTGCGCCAATGAC 34856 37 100.0 38 ..................................... CACTGCGCCAGAACGGCGTATCGTGCGCTGTCGCCCAC 34781 37 100.0 36 ..................................... TTGACTCTTTTTGCAATGGGAGTTGGGGGCGGTTCA 34708 37 100.0 36 ..................................... CGCGGCTTTGTATACGTTTTCTCCGTACTCCTGCAC 34635 37 100.0 37 ..................................... CAGGATCACGTGGACGCACGGAGCTGGAGAGGATTGC 34561 37 100.0 36 ..................................... AGTCTGCGGGTCGGTGATGCAAATGTCCTGCGCGTC 34488 37 100.0 35 ..................................... CGAAACATTCACGCGGTGCGGCTGCTGGCCATTGC 34416 37 100.0 36 ..................................... GGCGGCAGATGTCCGTGCGCCGCCGCCATGTGTGCT 34343 37 91.9 0 .................................GG.T | ========== ====== ====== ====== ===================================== ======================================= ================== 51 37 99.8 37 GTTGAAATAGCTCATGTCCGAACGAGGACACTGAAAG # Left flank : CAGCTTGACCCACGAGCGAACAGCGCGTCGCATCATCCCGACGCTTTGGCATAATTGGTCGGTGCAACTGGCGGCCTACGCAATTTTGGTTGAGCAGCAACGCAGCCACCCCGTGCGACGTGGGTTTATCTACTACATCCCACAAAAACGAGCGCGCGAGGTCATGATTGATGAGCGCCTGCGCGCTGAGGTTCAAGATGGGTTGCGGGCCATCGAAAGCATGGTGGCCACCGAACAGTATCCCCCGCCTACCCCCTATCGCCGGCGATGTGCGGCCTGCGAGTATCGCCGGCTGTGCAACGATATATGAACCCTGAACGCCCCATCCGATAGCGAAAACCCGGTCCACTTTCGCGCAAAATATGATTTTCGCCGGGCATAGTCTATTCCTTGACGATCGCGTAACTCCCTCGTATGATCGAGGCCTAGAAAGAGCCTCGGCAAGGCGAAAAGCTCATCTCAGGTCTCAGATGACCTGAAAATGCTTTTAACCATCTGCG # Right flank : GCTGCGTGCATTGCAAGCGTGACGAGAGAGTTGATAATTGGCGCTTGGCTACGTCAAAGAAAACGCAACTGCACCCAATCCCACCGAATCTCTGGAGTTGGTGAAAACCGCGATGAAATACAGCATCGGTCTGATTCTCACCGGCATCGTCTGCGGGCTTTTGGGATTGGCCGGCATGGCCCTGGGCGGATGGCTTTTTTGGACTACCCCGAGCCGCACGTGGTGGGATGAACTGGGCGCTTTGATCATCGTGCTCGGCTTCATCTTCTTCGGGGGCGGCGTCTCGACCCTCATCCAGGGCCTCACCGCCTCCACTGCCGTCGCACACGTCGCCGTGGTGCCTGCCGAAGCTCGACTTGGGGAGACGCTCACCTTACACATTACCCTCACCCCCCGGCGCACCCTCCGCGCCGGACCGGCCACCTTGACCCTCAACGGGAAAGAATTCATCAAACTCTGGTCTGGGCACATCACGTGGTCGCACACCGCCCAAATCGTCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAGCTCATGTCCGAACGAGGACACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //