Array 1 473831-475749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQI01000007.1 Salmonella enterica subsp. enterica serovar Havana strain CFSAN024771 CFSAN024771_contig0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 473831 29 100.0 32 ............................. TGTGAGATACCGGCGCGGCCCGTCATGACGTC 473892 29 100.0 32 ............................. TTTATGCCGAAGTTAACGGGACAAGAAGCGCA 473953 29 100.0 32 ............................. TGAGATCGGCAATTGCTCTCTGGAGTTGCCAT 474014 29 100.0 32 ............................. GCCAGACAACAGCAGACACCTACGCAACTGCA 474075 29 100.0 32 ............................. ACAACTTCAAACGGTGATAACCAGGAAATAAT 474136 29 100.0 32 ............................. TTAGCCTCAACGTAAAATCCTGGGCTTTAGGC 474197 29 100.0 32 ............................. ATCGCGTTTTCCCTGGCACTTAAGGAGGTTTA 474258 29 100.0 32 ............................. CTGGACGGTCGGATCGTGGGCAATTATCCGTT 474319 29 100.0 32 ............................. CAGGTTTATTTTCCGCGCGGGCAGGCGCTGGA 474380 29 100.0 32 ............................. TTATCAGCACATAACGGAGAGCGAGGCGCAGT 474441 29 100.0 32 ............................. CGATTTATGTAAAGGGTGGCCTGGAAGGGGAT 474502 29 100.0 32 ............................. ATTATTGATGGTCATCATCGTTTCCTGGGGGC 474563 29 100.0 32 ............................. AACGCTGTCAAATTATTTTCCCGCCAGCTTGC 474624 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 474685 29 100.0 32 ............................. TGCCAGCTCATCAGCGCTCATAACGGGCTCCA 474746 29 100.0 32 ............................. GCATGACTGTATGGCGTACAAACTGGATAGAT 474807 29 100.0 32 ............................. GATCGTGATTACGCTAAATATTTAATGAGAGG 474868 29 96.6 32 ............................T GCCGATTCAATAAAAACAGATAATCTGGCCGC 474929 29 100.0 32 ............................. GCTGTTATCGCCAGTATGGGCGGCCTGTGGTT 474990 29 100.0 32 ............................. AGGATCTGTCCCAGCAGGGCGTCTGCACGTTT 475051 29 100.0 32 ............................. GTCACTTGGGGCAACTTCAAGAATACTTCTGT 475112 29 100.0 32 ............................. CGCAGGTATCACCTCCGCCATGGGGATCGCGC 475173 29 100.0 32 ............................. GCCTCTACCACGGAGCAAAAATGATAAGCGCA 475234 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 475295 29 100.0 32 ............................. CCGTAGCTTGGTTGTGGACTCATCCTAACGGG 475356 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 475417 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 475478 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 475539 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 475600 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 475661 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 475722 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGCCCCTCTACCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 492359-496419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQI01000007.1 Salmonella enterica subsp. enterica serovar Havana strain CFSAN024771 CFSAN024771_contig0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 492359 29 100.0 32 ............................. CTCTTTCATGGTCGTCGGTTTGATAAGCTCGG 492420 29 100.0 32 ............................. CCCGTATTCGCTATCGCCTCCGAGATGGTCGC 492481 29 100.0 32 ............................. CCAACGAAGTAGAAGCGCCCCCGGTGCTGGTG 492542 29 100.0 32 ............................. TTACTGTTTTTATTGGGTTTTCTTTTTATCTC 492603 29 100.0 32 ............................. TGGTTCTCCAGTCTGGAATTTCGCCGTCAGGG 492664 29 100.0 32 ............................. CCGCCGGAACTGAAAGAGGATCCGACGGGCGA 492725 29 100.0 32 ............................. ATCACAAGAAAACTTGATACTCGATTATCGCT 492786 29 100.0 32 ............................. GCGGTAAACAAATAAACATTTAATTAAATAAT 492847 29 100.0 32 ............................. TTTGGTTAGACTGCGTGTTAGTCATAGTTTAA 492908 29 100.0 32 ............................. GGGGGCAATGACGATGACGGCGCGGCGAGATG 492969 29 96.6 32 ............................C GCTGGCGCGGTCACCTCTTCCCCTTCTGGGGC 493030 29 100.0 32 ............................. ATGACTGGTGAGATCGCGTGTGCGGTATACCA 493091 29 100.0 32 ............................. TGACGCTTTTTATTGATTCATTTTGCGATACG 493152 29 100.0 32 ............................. CGCAGCGCCGCGCCGGCATAACTGACGATCAG 493213 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 493274 29 100.0 32 ............................. ACCCACTCCCACCTGCGGAAATTGAAACTACA 493335 29 100.0 33 ............................. CCCGCAAGGGCTTTTTTTATGCCCGGAGTAAAC 493397 29 100.0 32 ............................. TGCTTCAGGCTGGCTTAATCATTACGGCTTGA 493458 29 100.0 32 ............................. AGTACAATGAACTGATCTCAGCGGCTAAAACC 493519 29 100.0 32 ............................. CCGCGGCTTACCAGGTACTTTTCACCGTCCGT 493580 29 100.0 32 ............................. GCTCAGAAAGGGGATAAAGGGGACAAAGGCGA 493641 29 100.0 32 ............................. CGACTAGCTCAATACTTTCAAGCGGCGCGAAC 493702 29 100.0 32 ............................. CCGAATACAAAAAACCCCGGTTGGTAGCCGGG 493763 29 100.0 32 ............................. CGACGAATGCGTTCATTGAGAATAGCCAGAAC 493824 29 100.0 32 ............................. TGACCAGAGCAACGGCGACGATCCGTATACGA 493885 29 100.0 32 ............................. TTCCTGTCCGATCTGAGCGTGACCGGCGAGGA 493946 29 100.0 32 ............................. GGGTCGTTTTAGAGGAACTATTGAGGAATTTG 494007 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 494068 29 96.6 32 ............................T TTCTGTTATTAATTGCCATTGGCCACCACACC 494129 29 100.0 32 ............................. GGTAAAACGGTGGAACAGTGATTTTAGCGTTA 494190 29 100.0 32 ............................. ACTGTTTCTATAACGGTTCGTAAACCGTCATT 494251 29 100.0 33 ............................. GCTTCAACAGCAACAGGCTCAGGCTCATATGCC 494313 29 100.0 32 ............................. GATACATTATGAAAAAAAGCATCATTGCCGCC 494374 29 100.0 32 ............................. CTGCGCGACAAACGCCATACGCAGGAGGAAAT 494435 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 494496 29 100.0 32 ............................. TTGATACGAGGCGTCGAAACCTCTTCTTAACG 494557 29 100.0 32 ............................. TCTCCCCCCGCGCCGTTTGAATACCATTTCCA 494618 29 100.0 32 ............................. GGGCGTTTAATCTTATCTCGCCTGTTGATTTT 494679 29 100.0 32 ............................. GCGGATGAGTGTGGGGCTGTTGCCAGCGTCAT 494740 29 100.0 32 ............................. TGTAGCTCCCGGGAATCGCGAACTCGTTACGG 494801 29 100.0 32 ............................. GTGTTCACATCCAGATAGCTGTCGTCATCAAC 494862 29 100.0 32 ............................. TGCGGCCCGTCTTTTAGCGTTTTCCAGTCGCC 494923 29 100.0 32 ............................. GGAATATGAAAATTATTATTTTTGCAACTGCA 494984 29 100.0 32 ............................. AATCTAAACAGTAATTTAAAATTGTTAGCGTC 495045 29 100.0 32 ............................. CTGGCCGGGTTACAGGGTGGCAGTGAGAAAAA 495106 29 100.0 32 ............................. ATCCTCGAATCACTGGCGGTAAAAAAACGCAA 495167 29 100.0 32 ............................. GATACAACGCCGTTTTTACGCGTTGTGATGGA 495228 29 100.0 33 ............................. AATAAACCAGTTCTTTGCAGACGTAGGTTCCGC 495290 29 100.0 32 ............................. ACGACTGAATTAAAACCATACGGCGGCTCATA 495351 29 100.0 32 ............................. TAGCTATGACAACTAAAGACGACACAAACCAA 495412 29 100.0 33 ............................. ACGGAAATCCGCGTGACCTACAACGGGCACAGG 495474 29 100.0 32 ............................. TCGCCGTTCTGGCGTCTGATTAAGGCAATCGT 495535 29 100.0 32 ............................. CTGTTTTCATTAAAAATCACCTCCGTTATGGT 495596 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 495657 29 100.0 32 ............................. CGGGCAAATGCCCGCTTTCTTGTTTCTATCAG 495718 29 96.6 32 ............T................ TGCCGCCGTCCGGGCGACGGGAATAATGTGGC 495779 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 495840 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 495901 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 495962 29 100.0 32 ............................. ACCCGACACGCGTGCGCGTATTTGAGAATGAC 496023 29 96.6 32 ............................T CGTCGACAAGTTACGACCGGACTTATTCGCGC 496084 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 496145 29 100.0 32 ............................. ATTGTTGCGCCACCAAAATTTTGAGCGCCACG 496206 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 496267 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 496329 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 496390 29 93.1 0 A...........T................ | A [496416] ========== ====== ====== ====== ============================= ================================= ================== 67 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAACCCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //