Array 1 1028763-1030255 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061124.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S438 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1028763 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1028824 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1028885 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1028946 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1029007 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1029068 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1029129 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1029190 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1029251 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1029312 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1029373 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1029434 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1029495 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1029556 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1029617 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1029678 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1029740 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1029801 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1029862 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1029923 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1029984 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1030045 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1030106 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1030167 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1030228 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1046387-1048290 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061124.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S438 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1046387 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1046448 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1046509 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1046570 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1046631 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1046692 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1046753 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1046815 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1046876 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1046937 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1046998 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1047059 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1047120 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1047181 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1047242 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1047303 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1047364 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1047425 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1047486 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1047547 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1047609 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1047712 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1047773 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1047834 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1047895 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1047956 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1048017 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1048078 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1048139 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1048200 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1048261 29 96.6 0 A............................ | A [1048287] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //