Array 1 261495-261046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELXK010000001.1 Enterobacter roggenkampii strain 172D4 172D4_S136_R1_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 261494 28 100.0 32 ............................ GCTAATTGGCTCCTTGGCGGGCGGCAGGGTAT 261434 28 100.0 32 ............................ CGTCAGCTTTCCGGCGGAGAGCTGCGCCGTCT 261374 28 100.0 32 ............................ GTGTTCTTGAAGTTGATGAAAATGGCGCAGTT 261314 28 100.0 32 ............................ CAGCGGTTTTCGCATAATAACCGCAGGGTCGA 261254 28 96.4 33 ....A....................... GCATGAATCGCACTTCCAATGTGCGCCGATTTA 261193 28 92.9 32 ....A.................G..... AGTATCCACCGGCGACTTTACTGACGGCATCG 261133 28 85.7 31 ....A......C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [261108] 261073 28 67.9 0 ....A...T..A....AT...CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.9 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AAACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTAACCTCCTGAGTGATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGGGTGGGTGGAATGGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : CTGGAACGAACGGCTAAATAATTGTTCAAATAATCGACTGCGACACACAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 272160-271048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELXK010000001.1 Enterobacter roggenkampii strain 172D4 172D4_S136_R1_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 272159 28 100.0 32 ............................ GACCGCATGTCGTAAAACAGTTTCAGTGTTTC 272099 28 100.0 32 ............................ AAACGATAGCGTCACATGTTTTTTGCGTCAAC 272039 28 100.0 32 ............................ TGGACGCGTCGAATATCAGAGAACGGCAGGAC 271979 28 100.0 32 ............................ TGCAAAGCCGGGTTTTAACGAGCTATCAGTGT 271919 28 100.0 34 ............................ AGTCCGCTCCCTGAAATGTTCGGCGCGTCGCTGT 271857 28 100.0 32 ............................ ATAATATTTATTGATATACTCTTTTAATTCCA 271797 28 100.0 32 ............................ TTTACGCGCTGATAAATCTCCACCTGACGACC 271737 28 100.0 32 ............................ TGCAGGGATTGCCTTCAGTGTCGCCAGCGCAA 271677 28 100.0 33 ............................ ATCAGCAATGGATGGGAACGCATCGAAGCAATC 271616 28 100.0 32 ............................ CCTCTCGCGTTCGTGAGAAGTTCGAACATGAT 271556 28 100.0 32 ............................ TTGTGCCAGTTACGGAAAGCGGAGCAGAACAG 271496 28 100.0 32 ............................ ACCAGCAGGCAGGCATCACCGGCGTGCCAAAA 271436 28 100.0 92 ............................ GCAGCCAATACCAGCGGTAAAACGCTGCTCGGGTTCACTGCCGTACAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 271316 28 67.9 32 NNNNNNNNN................... GTCGGCGGCAGCATAGCTGACAGTAGTTTCCG 271256 28 96.4 32 A........................... TAATTATGGCGCTATTACGCTGAGTCATAACG 271196 28 100.0 33 ............................ CGCGCGGACGGCTCCACGGTAAAACACGTATCA 271135 28 100.0 32 ............................ GGGTGATTACATCTGCGGTGAATGCTGCGTTG 271075 28 92.9 0 ............G..........T.... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 18 28 97.6 36 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGGTGGAATTTGAGGACGAAGCGGAAAAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACTGCGATATGTTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAATTCATATTATTTCCTGAGTGCTATCTGAGGCGTCGGGGGTGTTCCTCTGACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAACCTTTTGATTTATATAATGCGAATTTACGAACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTTTAACAATAAGATGGCGCAGTTTCCTTTCA # Right flank : GCCCCTCTGGGCTTTAATGCCGTGGAAATGGCGTTACTGTCCCACAGACAGTACAAGTAAACCCATCCCTCACAAACATTCACCTCGTCTATTTAAAAACAAAATACCATCATCCACACGCTTTCCCTTTTCAGATTAAATAAAAATCCCATTCAGGGGATAATTATATTTTCGTGGATATATTATTAGTGAAAATAATCCTTTTAAAAAAGGATGTATTTTTTGTTTAGTCATCACCGAAATTTCCATTCATTTGATATCTATCAAATTTGCATTTGTCTTATGTCCGATAACATACCCGCATTCAACACCTTGAAATTAAAGCCGTTGCCATGCCTGCAAATAGCATCACTCCTACCGATTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //