Array 1 4176-3837 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQNS01000014.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate BTHERMOSOX, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ==================================== ================== 4175 39 92.3 36 ...C..G....................G........... GAATGCCGTTTCCTTAAACATGTTTTGCATATTAGT 4100 39 100.0 36 ....................................... AGCGACTGCACCATTAAACATGTGTTTCATATCGGT 4025 39 100.0 36 ....................................... GTTATATGCAGAACGAAACATATCAGTCATATCAGA 3950 39 87.2 36 ...T...GTG...................C......... GATGTGTGCGCTATTAAACATGCTTTGCATATTAGT 3875 39 92.3 0 ........T.....C.....C.................. | ========== ====== ====== ====== ======================================= ==================================== ================== 5 39 94.4 36 CACATTACCAACATTCCAACTGCCAATATTTTGGTTAAA # Left flank : CCTGCATTTTTAAAACCGTAATAAAAGACATCTCTACCACCGCCACCGACTAGAAGGTCATTGCCTGCACCACCGATTAAGATATCATCTGTAGTGCCACCTATCAGCGTATCATCACCCCCTAAGCCATGCAGCGTCGTCCGTTTGGCATCTGTGTTGAGTGTATCAACACTATTGCTACCCTGTATCGTTTTACTGCCATCAAATATGCCAACATTAATATCCCAGTTATAGGTGTCTATTAAATATTGTTTGGCAGTAGCATCAGTATAGTTTGCGATACTCCACTTAACATCACGCTGAATAGTAGTCTCTCCTGCAGCGGTATCAAGTTTTGCCCAACCACGCAAGGTATTATCCATATTGGCGATATCCATATTGGTGGAAGCCACTGAGATGCCAGTAAACATACGCTCTGCATTTGTTAAACTCGAAATGTCCCAACTGCCAACATCTTGATTGAAGCCTGTTGCGCTCCGAAACATACCCTCCATATTAAC # Right flank : TTTCTTTGCGTTAAAAAATGCTTGAAATGCGCTATTTGCATGGGACACATCCCAATTGGTTAAATCAACATCAGAGCCATTACCATCAACATCAATATACCTTTGTAAACTGTAAAGCGTGGTTATATTTTTAGCGATGGCAGTATTGGCATTGCCAGCAAGATCTACAAAGGTATTTGCTGCAACTGTGATAGCAACATTAGCATGCAGTCCACCTAGGCTTGCTAACGCCACAGCAGTATATTGGCTTGCACTTACTTTGGTAAGTGAGACCGCATTAAGAGTACCATTTTCAATGCCAATATCATCTGCGGTAAACGACCCATCTTGAATGGCTTCACTAAAATTAAATGTGATTGTTCTGGTATCTTCACCACCACTACCTGTAATCGCAAGAGTTGGTGTGCTGGTGTTTAGCGTGAAGGCAATGGTTTGCTCATCGGAAACATTTCCTGCTCCATCTGTTTGCCTTACTTTTACTGTGTAAATGTCGTCCTCTG # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACATTACCAACATTCCAACTGCCAATATTTTGGTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 48946-48166 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQNS01000147.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate BTHERMOSOX, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 48945 36 83.3 39 ..TT...T..T..................G.....G GCTTTAGCGTAGTAGAACATCTCTCCCATATTTGTAACT 48870 36 94.4 39 ..........T..................G...... GAGTCGGTGTAGGAAAACATATACCCCATATCTGTAACT 48795 36 91.7 39 ...T......T..................G...... ACGATAGTGCTGGCGAACATGTAGCCCATATCTGTAACT 48720 36 86.1 39 ..A.......T...A..G...........G...... GCAGAAGCATCGAAAAACATCCAGCGCATATTCGTAACA 48645 36 83.3 39 ....CC.........C.G.T.........G...... GCTTCGGTATAGTCGAACATTCCAATCATATTTATAACA 48570 36 88.9 39 ..A..C....T..............T.......... GCAATAGCACCAGAGAACATATCCTCCATATTTACAACC 48495 36 88.9 36 .C..C..............T.....T.......... GGAGTTGAGGAGAACATTGAGCTTGTATCTGTAACT 48423 36 88.9 36 C...C..............T.....T.......... AGAGTGTCAATGAACATATGGCTCATATTTACAACC 48351 36 100.0 39 .................................... GAAGTGGCATAACAAAACATTTCTTTCATATTTACAACC 48276 36 100.0 39 .................................... ACATTGGCGCCATAGAACATTCGATTCATATTCGTAACA 48201 36 88.9 0 ....CC.................G...........G | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 90.4 38 TTGCTAACATCCCAGTTACCAATATCTTGATTGAAA # Left flank : AATAACTCAGGTTAATTTTATCGCCTTCGCTAGCGTTAAAATCTTTAATGGTGTCATGACCCGCATTTTGATAACTATAAACAAAAGTATCCGCACCAGCGTTACCCGTAAGAGTGTCATCGCCTGCACCGCCGTAGAGTGTGTCGGCATGGTTGCCCCCTGTTAGCGTGTCATTGTCACCTAAACCGTGAAGGGTGACAGCCTCCCCATGTCCGCTCTTGTCTATTGTATTCTTGGCGTTGTTGCCAACAAATACATCTTTAATATCATTGTTATTACTGTCATTAAGTAATCCATTATCAGTAATAGTCCAGTTCTTGTCCAGTAGTGCTTGGCGTGCCGTGGCATTGGTGTATTTAGTGTCATTTGCACCAAAACTTACGCCTGTTTTTATACCCTCATTGTCGGTTACATTAACATCTGACCAGCCTGCTAGTAATAGGTCGTAGTTTTCAGTGCTAAAGGCGGTTTTATCAAGTATATTATTAGCAACCTCCAGA # Right flank : CCTTCGTTATAGCAAACGCCTCGAGTAATAGTTTCGTCATAGCAAAACATATAACTCATATTGGTTGCCAACGAAGTATCCATGTTACTAATGTCGTCGTTGAATGAAGTGTGTCCGAAGTAGAGAAAGGAAAGATTGGCACTTTGTTCAGTGACCAAAGTTGCCACTTCATCAGTCATTATTGCTTGAGCAGCACTATCTGTTGGATTGGTAAAGTCTGTTTTTGCTTCAATAGCAGTTTGATAACGGTCTTCTAGATAGTAATTAACACCTTTTACCACCATGGATAATTGCTCAACAGTGGTTTTGTCGTCATCAGGCGTGTTCCCGACATAGCCAGAATCCTCGTAAATTTTGTTAAGAACATCGGCACTACTTAATACAGTAATATTAAAAAAAACTGAGGCTGATATCAACTGAACTGCATCAATTTCATTGTATTCATTGGCACTATTGCCAATCGTTAAGCGAATTTTATTTGATAAGTAATCAAGTGCATG # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCTAACATCCCAGTTACCAATATCTTGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 621-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQNS01000049.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate BTHERMOSOX, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 620 28 100.0 32 ............................ TAACCCCCTCAGAATCCCTAAAACTCCAAGGC 560 28 100.0 32 ............................ TGTTCCTCAGACTTCTTCTACTGATTCTGCTT 500 28 100.0 32 ............................ TGTTATGTCTGGCCATACTGGCCTTCTTCCTC 440 28 100.0 33 ............................ ATCCATAACAGGGTCAAGAGGTGTAGACATACA 379 28 100.0 32 ............................ TCCTTCAGGAAGATGATCGTTATCATAAGTAA 319 28 100.0 31 ............................ ATTGACGTGAACGCTCAAGACGACAACCAAC 260 28 100.0 32 ............................ TATTTGGGTTCGCTTGATTCTTGGTATCTTGG 200 28 100.0 32 ............................ AGGAAGGACTTCATCGATAAAAATCGGAATAA 140 28 100.0 32 ............................ TTCTTTTCTTGTTGACTTTATGTCCGATCCTG 80 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 ATTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AAACTGGCTAGGTGGCTTATCTGGCTATTGTAAGACAAGTAATATCTCGAAAATACCTGATAAAGTCAAAGGCTACCAAGTAATTTCACGCATTCGTCAAACAATGAATGAAACCAAGTTAAGCCAGAGAATTTCACATCAAACACAAAATAATATTTTAAAAACTGATACAGATATTCAAGCATATGAAAACCAATATCGAGCAAAAATGATAGCAACAGGGTTGGGTAATCCATATTTAGAATTAAATAGCTCCAAAGGCGGATTGTATCGGATTTATTTGCATTTTGGCAAAATTCAAAATAGTCCTATCGCTGGTAAATTTAATAATTTTGGACTTAGCAAAACAGCAACTATTCCAATCTTTTAACCATTGATTTGGTTGCTCTTTAAAAATTTGTTAAAAATCAAGTAGTTGCAATAACGATAAAAAACATTGGTAAAATCATTTTTTTGTTTTAAATGATTGTTACAATTGTTCTTTTTGCAATTAAAATACT # Right flank : ATTATAATACTTTAGTAACTCAAGACTCCCAGCAGAGGTTAATGGATCTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 852-103 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQNS01000054.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate BTHERMOSOX, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 851 28 100.0 32 ............................ TGATGTTAATTTGTGCAGATATTTACTGTCTA 791 28 100.0 32 ............................ GTCAAGACACATCATACTCACGCCATCACTAT 731 28 100.0 32 ............................ TTTTATGGCAAACACGCCAAGATGAGAATTTT 671 28 100.0 32 ............................ TTAAGGAGGTTTATCCGCTGGGGTGTGATTCA 611 28 100.0 32 ............................ TAAACCCGTCAAAGAATCCTCTACGCATCTTC 551 28 100.0 32 ............................ ATTCCTCTTTGCTTAGTTCTGAGGTTACAGTA 491 28 100.0 32 ............................ TCTAAATAGTTTATGGTTAGATTGTTAGTGTT 431 28 100.0 32 ............................ CAGTACGGAGAACCTTATTACGGGTGTTATAA 371 28 100.0 33 ............................ AATAAATAGATTGTCATCATTGTAATCAGCCAG 310 28 100.0 32 ............................ TCAGTAACCTCAACAATCTTGTTCTGAGCTTC 250 28 100.0 32 ............................ CAAACAAAAATCTTGATGACATGTGTTTCGAC 190 28 100.0 32 ............................ GCTAGAAGCAAAACTATAGACGGCTTTCCAAT 130 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 32 ATTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AGTAAGGCTAATTTCTGCACCTTCTTTGTAAGCACCAGATAATGCACTGAAAGCAGTGATCACTGCATTTATTTTTTGTGCCAATGAATGTACAGATAACCCAAAGAGCCATCGTCTACCTCTGGCGGTTTTCTTGGTTCTGGTTGTGGTTTGAATTTGTTATTATTTTTGGGATGTGAATTAAATTATTGGGCGTTTGCGTTGATTAAAATTATAAATTACTTCTATAGGAGAGTTAGGTAAGTTAACATAAACATTGGCTTCAGTTGCCAAAAATGCTTTATAGGCACTTAAAAATGGCTTTCAAATTTAATGAGGTTTTAGGTTGTGTTTTTATGGTTTTAGGGTGGGGGGTTATAAGTATAATTCCTTTTTTTGATTCTATAATTCTTGCCAAAATAAAGTGGGCCACCAGGAGGGTCA # Right flank : AGATCAACCTCGTAATTTAGCCAAATCAGTAACTGTGGAGTGAGGCTGAGTTGGGTAGAACTTTATCGAGTTTGTCGTTATATTTAAGTAAATTTATTTGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //