Array 1 11068-10819 **** Predicted by CRISPRDetect 2.4 *** >NC_020055.1 Maridesulfovibrio hydrothermalis AM13 = DSM 14728, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 11067 36 100.0 34 .................................... TGAACCTCTAACTAAATAGAGGATAAATATGAAT 10997 36 100.0 35 .................................... ACTGCTGCCTCAACCACTTGCTTAATTTGCTTGAC 10926 36 100.0 36 .................................... AGATCAAGGTTATCATCATCAAGCAGCGATCCATCT 10854 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 100.0 35 CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGAC # Left flank : TGCGTTAGCAGGGCTTTAGGCACTTCCTGAAATGAAGTGAATATGAAATATGGCGGAGAGGGAGGGATTTTTAATTGCTCACTAACACATTTAAACTAAACAACTTTTATAATTATTTCATTTTTTGTTGCCCCCTTCATTGCCCCTCAGTAATTATTTATTAAAGTGAACTTTAACGTTAGCTTTAAGGGCTTCTCAAGTTGCTCAGAAGGTGGTTGGACGTTGCAAAATATATTTAATCCTTCAACCAGATATTTATTGAAAAGGTAATTCAAAAAAACTGAGTGGCCCCTCAACTTTATTTTGACATTTATCCTGTGGAAAACTTTTTTTGGTATTTTATGGCGTTTTATAACTACTCAAAATAGCAGATAAAAAAATGCAAAACCCAAAACGTTTTGCTATGTACCAAAAATGGCTGTGGAAAAGTGTTATTTTTTCGGACATAGCTGAAAACAGCTTTGCAAGTAGTTGGAAATAAGGTAGATAAAATCCATAGC # Right flank : GCAACAAAGCCGCAATCCCTTATTTGGCATTGCGGCTTTATAAATGTGAAAGTTTATAACAAATTTAAATTGCTAACTACTTGCTATTATTATTTTTTACTGCGTAAACATCCCTTCCACACCCCCTCATATCCGAAGGCCTAGATCAACAAAAACACCATACTCTCCAGCCAGTTTTTCAAATCCGGCCAAGCTATCCTGTACCTGCTCAATACACTGCTTAGATTTTTTCGCACTGATATTTGCAACACCAGCCAGAGCCAATAAGTGTTCTTTATCTGGACTTCGCCCCTCTCCCATTACCAGAGTAGACTGCTCCCCATTAGGGCCATGAGAATATGTGAGGTCATATGCCGGAGCAAAAGTCCATTGGCCAGACTTATCGACACGCTTTGTTACTCATGTCGAGAAAAGCCGTTTTTTTCGACACGTTTTGTTCTCACGTCGAAAAACAACCATTCTTTCGACATATATTTAATTTGCCCGAAACCGGTACTGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 24679-24430 **** Predicted by CRISPRDetect 2.4 *** >NC_020055.1 Maridesulfovibrio hydrothermalis AM13 = DSM 14728, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 24678 36 100.0 36 .................................... TTGTGTGTCATAACGACACACTGTGTATATTTGACA 24606 36 100.0 34 .................................... GATGAGGAGGTATATCTACCTCGAAGACTTCTCT 24536 36 100.0 35 .................................... AAATGCAGTCTGCAAGGTATTCAGTGGACGGAGTG 24465 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 100.0 35 CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGAC # Left flank : ATAAAAATATTATTACCGCCAAAGACTTTGAACCGGTCACAGCTAAAAAATTTAAACTGAACGGCCGCAGCATGGGGAAAATTCTTGAGTCTTTTGAAAAAGAGATGTGTATTCGCATAGCAACAGAGGCTGGCACATTTGCACAATTGCTTGACGCACAGGTGCAGAATTTGCGGAATTGGGTCATGGATCGTGATGAATTGAAATTTTTCCGTAGCGGAGAAAGGAATCTCAGTTTGGGAGAAGTTGAAATCATTTAATTTTTATAAAAAACATAAAACTGAGTGACCCCTCAACTTTATTTTATCCTTTATCCTGTGGAAAACTTTTTTTGGTATTTTATGGCGTTTTATAACTACTCAAAATAGCAGATAAAAAAATGCAAAACCCAAAACGTTTTGCTATGTACCAAAAAGACCTGTGGAAAAGTGTCGATCTTTCGGACATAGCTGAAAACAGCTTTGCAAGTAGTTGGAAATAGGGTAGATAAAAACCATAGC # Right flank : GCAGCAAAGCCGCAATCCCTTATTTGGCATTGCGGCTTTATTAAATGTGAAAGTTTACAACAAATTTAAATTGCTAACTACTTGCTATTATTATTTTTACTGCGTAAACATCCCTTCCACACCCCCTCATATCCGAAGGCCTAGATCAACAGAAACACCATACTCTCCAGCCAGTTTTTCAAATCCAGCCAAGCTATCCTGTACCTGCTCAATACACTGCTTAGATTTTTTCGCACTGATATTTGCAACACCAGCCAGAGCCAATAAGTGTTCTTTATCTGGACTTCGCCCCTCTCCCATTACCAGAGTAGACTGCTCTCCATTAGGGCCACGAGAATATGTGAGGTCATATGCCGGAGCAAAAGTCCATTGGCCAGACTTATCGATACGCTTTGTTACTCATGTCGAGAAAAGCCGTTTTTTTCGACACGTTTTGTTCTCACGTCGAAAAACAACCATTCTTTCGACATATATTTAATTTGCCCGAAACCGGTACTGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 27885-28054 **** Predicted by CRISPRDetect 2.4 *** >NC_020055.1 Maridesulfovibrio hydrothermalis AM13 = DSM 14728, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 27885 28 100.0 45 ............................ ATCCAGCTTGCAGTTCCCTTGTAGAAGAGGGGATTGCGTCAAAAC 27958 28 100.0 41 ............................ TCTACGCTTGTTGAAGAATCTCTTGCTCCTGAAGTCAAAAC 28027 28 89.3 0 .........................TGA | ========== ====== ====== ====== ============================ ============================================= ================== 3 28 96.4 44 CCATACCGATATGGATACCTCTTTTGAG # Left flank : ATACTGTAACCCACGCAATCCCGCGAGCCTTAGAGCCGTCTTGAAAATTGCATCCAGCACAAACAGCGGGTGCTGCTTTGCAAATTTATTACGTTTGTTTATCAGGGAAATTTTAACACAATGCCAGCCAAGGTTCTTAATAGGAGCGAAATTTGTAATCATATTTTAGATAACGAAGGAGTAATTTTCATTGATGCGAGGCGGAGCATTGCCGATATCTTTAGGTTTATGGCTGCCAAGCGGATAGATGGATACGAAGCCTGTTTCAATCTGAAGGTGTTCGAGTTTAGCAATAAGTCTACCTTTCAATTGAGTAGTCAAATCACACTCAAAAACACTCTCCTGAACTCGAAAACCGAACCCTTCAAGTATTTTTGAAACTTTATAGCGTTCCTTGTCGCAGGAGATGTCATAAGCAATGAGGTGCCGTGTTATTTTGCTCATAAACACAATTTGCCCTTAACGCCTAACTGCGTCAAGGGCAAATTAAATTTTCCGGA # Right flank : AGGCTATGGTTTTTATCTACCTTATTTCCAACTACTTGCAAAGCTGTTTTCAGCTATGTCCGAAAAAACAACACTTTTCCACACCCATTTCTGGCACATAGCAAAACGTTTTGGGTTTTGCATTTTTTTATACGTTATTTTAAATGGTTGTAAAACGCCGTAAAATTCCAAAAAAAGTTTTCCACAGGGTAAATGCCAAAATAAAGTTGAGGGATCACTCAGTTTTATTTTTGGTATTACCTTTTCAATAAATATGCTGCATTTTTATCAGAAATAAGTTTTACCGTCTCTTCCCGCAAGGCAGGGATTTAATAGGGCAGCAAATTTTGTTTTTGCCTGTCCTTTAATTTGGGTAAAATTTATTAATTAAATTCAGGTTTATTAAAAAAGGGGATTACAGGGGGGCAGGTGTGCGGATATTTCTTTTAAAACACCGTAGACCTGACGAGCAGTCTACGATGTTTTGTTTCCACCAATCACATTAAATTTAAGATTTCCAG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATACCGATATGGATACCTCTTTTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 36276-36027 **** Predicted by CRISPRDetect 2.4 *** >NC_020055.1 Maridesulfovibrio hydrothermalis AM13 = DSM 14728, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 36275 36 100.0 35 .................................... CAGAATGGCGACTGGGCCGCGGCCGGTGATGCGCA 36204 36 100.0 34 .................................... AGGACAATCCTCCGTTCCTCTCCTCTTCCGATTG 36134 36 100.0 36 .................................... ATAGATTCCTTGGTTTCAAGGATGCGTTCCTTGTTA 36062 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 100.0 35 CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGAC # Left flank : AAAGTAAAAGCCCTCAGACACTTAAGTGATTCCAAGGGCTTAGTTCTGCTCTGGCGGAGATGGAGGGATTTTTAATTGCTCACTAACACATTTAAACTAAACAACTTTTATAATTATTTCATTTTTTGTTGCCCCCTTCATTGCCCCTCAGTAATTATTTATTAAAGTGAACTTTAACGTTAGCTTTAGGGGCTTCTCAAGTTGCTCAGAAGGTGGTTGGCGTTGCAAAATATATTTAATCCTTCAACCAGATATTTATTGAAAAGGTAATTCAAAAAAACTGAGTGGCCCCTCAACTTTATTTTGACATTTATCCTGTGGAAAACTTTTTTTGGTATTTTATGGCGTTTTATAACTACTCAAAATAGCAGATAAAAAAATGCAAAACCCAAAACGTTTTGCTATGTACCAAAAATGGCTGTGGAAAAGTGTTATTTTTTCGGACATAGCTGAAAACAGCTTTGCAAGTAGTTGGAAATAAGGTAGATAAAAACCATAGC # Right flank : GTAATAAAGCCGCAATCCCTTATTTGGGATTGCGGCTTTATTAAATATGAAAGTTTATTTGCTTACTGTTATGGCAAGAGGGTAATATCTCCACTGCTTATAAGCGAAAGTAAAATAGTTGCCCCATCACCTCAAAAAAACACACGCAATAAAACTATAACAATCAAGAAATCATATTACCCTCTTTTATGAATATTTTTTGATTCTTGAGATCCCCATCTTTCGGTTTCTGCACTTTGCTAGCTACAAACGGCTTTCCCTCACCAGAAGAATTAAAAGGAAGACGCGTTCTGCAAATCCCCCCTTTTCCATCCCCCTTTAGCAGCACCCATTCATTACTCTCATTCACATCTTTCAGTAAGGCAGGTATCTCTTCCAAATAAAAAGTAACTTCATAATCCTTAGAAGTGCCGTTTTGATTAACTTTACTAGATGTAGTAAGTTTAAAATACTGAAGTGAACGATCACCAAACAAAATCTGCGCACCAAGTTGCTGCCCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 118737-118127 **** Predicted by CRISPRDetect 2.4 *** >NC_020055.1 Maridesulfovibrio hydrothermalis AM13 = DSM 14728, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 118736 36 100.0 37 .................................... GGCTAGAGAAGCAGATTATTGCCAAAATAAATATAAA 118663 36 100.0 35 .................................... CTTGATGTTACTCATATACGCCGGAATGTCATGAC 118592 36 100.0 36 .................................... ATAATTGAGTTTTTCACTCCTCTGTCTATGTAAGAG 118520 36 100.0 37 .................................... TCTGTCAAAGCGAATGGCTCCCTCCCCTCCCTTGGAA 118447 36 100.0 36 .................................... AATACCAGATAACCTCTGGCATACATTTCGCTCATT 118375 36 100.0 34 .................................... CGCATTTAGCCTCATATCGCCAAACGCGTTACTG 118305 36 100.0 35 .................................... TAATAATCGAAAAGTGCACTCAGCCCTTCATAAGA 118234 36 100.0 36 .................................... CCATCTCACTTTTTCTTGCCGCTAAAAGGTTGCAGA 118162 36 80.6 0 ................G...........TCAA.A.A | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 97.8 36 CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGAC # Left flank : GATGCTGAATTCTACATCTGTTCAGTATGCGGTCACACTCAGGACGGTGAAGCAACAGAAAAATGCCCAATCTGTGGCGCCGCCCCCAAGGCATACGTAAAAGTAGATTAGTAACATTTGTCTCGAATTAAAAGCAAAAAGGCTCTGGCTGAAAAGTCAGAGCCTTTTTACATTCTGGTGAAGAATTGGACCTCTCAAATTGCTCAAGAGGTGGTTAGCGTTGTAAAATATCTTCAATCCTTCAATTAAATATTTATTGAAAAGGTAACTCAAAACAAAACTGAGTGACCCCTCAACTTTATTTTGCCATTTATCCTGTGGAAAACTTTTTTTGCCATTTTACGGCATTTTACAACTCGTTAAAATAACATACAAAAAAATGCAAAACCCAAAACGTTTTGCTATGTACCAAAAACGGGTGTGGAAAAGTGATTTTTTTTCGGACATAGCTGAAAACAGCTTTGCAAGTAGTTGGAAATAGGGTAGATAAAAACCATAGC # Right flank : ATTTAATTTACCTGTGACAAAGTCGAAGCTGTGCGTCACTAATTTTAATATAAATCAACGTGCACACCTCTATGATTTTCCTCTCAGGCTTTACATCAGCACAAAAAAATCCCGCATTACATAAATGCGGGATTTCATTTTAACTGACGACTCGGAATATTTTTACTTAACTTCGCCGGCCTCAAAACCAATTTTGGTTATTACCTCTTTGATTTTTTCAGCATCAACAGGAGAAGTTTCTTTGTATGTGGCATTTGCATTTTCGAGGCTGACATTCACCTCAGTGATGCCCTCTATACCGCTGAGAGCCTTCTCAACAGAACCAACGCAATGCATACAGCTCATTCCTTTAACTTCTATAGTTTTCATAACAGATCCCCTTGGTTGCCCTTTGTTTCTCCGGCAGGAGGTGTAGAGAGGCTCAGCCCGGATCGCTGAAGGCGAGATCATCTATCAAACGCGCAAAACGCATTATGTCTAGTTATTCTCAAGCCACTCTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 2366564-2366738 **** Predicted by CRISPRDetect 2.4 *** >NC_020055.1 Maridesulfovibrio hydrothermalis AM13 = DSM 14728, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 2366564 37 100.0 33 ..................................... GAAACTTCCTTCCGAACGCAGGAGCAGGAGCAA 2366634 37 100.0 31 ..................................... TGCAGCCGAAAGAGATCTGTACAGTCTTTTT 2366702 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ================================= ================== 3 37 99.1 32 CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGACT # Left flank : GGAAAAGCGGCATCTTGGAATGGAAATCCTATATTTCAAAAAAACTAAATCTCGATTGCTTAATGTTGTCAAGCCGTAATTCCGAGTAAGGTAATATCTTCGAGAATTAATTATTCCAAAATTAGTTGTCCTCTCCGTTGCCCCGCAGCAATTCATTCTTAAAGTGAACTTTAACGCTAGCTTTAAGGGCTTCTCAAATTTTTGAGGAGGTCGTAAGCGTTGCAAAATATATTTAACCTTTCATACAAATATTTATTTAGAAGGTAATTCAAAAATAAAACTGAGTAACCCCTCAACTTTATTTTGGCCTTTGTCCTGTGGAAAACTTTTTTTGTCATTTTATGGCGTTTTATAAATTATTAAAATAACGGACAAAAAAATACAAAACCCAAAATGTTTTGCTATGTATCAAAAAAGCCTGTGGAAAAGTGATGATTTTTCGGACATAGCTGAAAACAGCTTTGCAAGTACTTGGAAATAGGGTAGATAAAACCCATAGC # Right flank : GCAATAAAGCCGCAACTCTTTATTTGAGATTGCGGCTTTATTGCGTTGGAAATTTATTACAAACTTAAAATTACTAAATACTTGCTATTTTTATTCGCAAGTATCCTCGTCCAGAGTGCCACCCATCAAGAATACCTGAAAATAATGCAACGTCCATTTCACGCCCCTTATATCCGAAGGTCTAAAACTTAATTTATGTATTTGGAAAATTTCACTTCATAGTTTCTGAACATGACCTTGAAGCGTTGCTTTCATGGGGAATGGCAAAAGACAACGCAATATAGCAACTTTATATTGGTGTAAGGTGCAGGGGGTTGGACGGTTACGAACCTTTAAGTGTCATGATCTCTTTTTCGCTTAACATGTGGGGGGCAACTCCTATTTTTTTTTAAAATTTTGCCCCCACTTTTGCCCCAAGAATTATGAGTTATCAATAATTAGGGTTGGATAAGCTGAAATAAGAAATCGTAAAAAAAACAGAAGCCCCACAAGGGTTTTGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 7 2574826-2575873 **** Predicted by CRISPRDetect 2.4 *** >NC_020055.1 Maridesulfovibrio hydrothermalis AM13 = DSM 14728, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2574826 28 100.0 32 ............................ ATTTACGGCCCAAACCTTCAGCAGCCGCCAAG 2574886 28 100.0 32 ............................ TTTGCCCATAGCGAAGCAAAGCGCACTATGTG 2574946 28 100.0 32 ............................ TCCTAAGATTGGCCCCTTGAAGATTGGCCTTT 2575006 28 100.0 32 ............................ TACATGCTCTTGGGGAAAGCTTTAAGAAGAAT 2575066 28 100.0 32 ............................ TTTAACCGGGAATTTAGCCTTGCTCATTTGCT 2575126 28 100.0 32 ............................ TCAAGGAGGCGCGGAAGATCGTTGATGCAGAA 2575186 28 100.0 32 ............................ CTTGAGGTCAGCGAAGACTTCGAGTTGACGAA 2575246 28 100.0 32 ............................ GCAATGAAGTTGAAAAAGGCATGTTCGTTTAC 2575306 28 100.0 32 ............................ TTGCGGGCTGACCGGTTCAGCAAACGTTAGCG 2575366 28 100.0 32 ............................ TCAACAGACCTATAAAAAGTATGACTTACTTT 2575426 28 100.0 32 ............................ TCTGCAACGGCAAGGGTATCGCTCACTTTCAC 2575486 28 100.0 32 ............................ AACACGCAGAAGCTCTTTCTTACGAAAATCAG 2575546 28 100.0 32 ............................ CGCAGATCGAAAGCATCAGCAAGACCGGAAAC 2575606 28 100.0 32 ............................ TACTCCCAATCTTTTTATGTAGCTGAGTATCT 2575666 28 100.0 32 ............................ GTGATGTGATTTGAACCCCGTTCCATGTCAAA 2575726 28 100.0 32 ............................ TTAAAAGAGCGGGCATAGCAGTTAATAATTAT 2575786 28 100.0 32 ............................ ATATCGGGTGGTGTTCGTCTTCCGGGAGAATT 2575846 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : ATAAGGGAGTACCGCCACCACCGCAAAAACCGACAAGTACTCCGGCCTTGGCAAGTTCCCGCATGGCCGCCTGAGTTACGGAAGTGCCGCTTCCAAGCAAAATATTAGTAGTGTTGGCAATGGGGATATTCCAATATAAAGATTTTTTACCAAGGGTCGTTACATACTCAACCCTCCCATCTTTAACCAGTACACGGCAATGTTCAAGATAAAACAGGTTGGCCCTTTTGGAGTGCAAGATTGATTTCAACTCGGATGGCGATGTGCTATTCATATTTACAGTATAATTTAATTGTGTTTTTTTTGCAATCATTCATGCATACCATTCATTAAAAAAGTTCATTCGGACATGTACGTTTATATTATAATAACCCTTTTTTATCGATCTGGATTTATTTTTACAAATTCAGTATGTTGCAATAATAGTAAAAAAAAAGGGGGTTGTTCGTATTTTTAGTGTAATCCTTTGTTGTAAAGCGATTTTACCGTTTAAAATTGTA # Right flank : AGGCGCGCGGGAAACAGCAATAGCACTGCTCCCGTTCACAGCCGGATAGGGGGAATCCCCATTTTTAATGGCTCTCAAAAACAGAGGCTAATGCCCTTCACATTTATGATTTGATGGCGCCCAGTTTTCCATATACCACGCACGTGCACCATGTATTTGCAAACCGTGATATCGTACATACTCAAGTTGATCCTCGGTGTAAGTATGTCCATGTATGGGTTGGATTGCAGAAACTTCCGCAGGTCCGTAGCCCTCAGTCGAGGACTCAGCAACAAATACTGGTTGACCACAAGAGCCTGAAGGGTGTTTGATAGTCAGTTTTCCTAAGCCGACCCCCTCTGCTATGCAAGGAACATCTATATCTATAACTAAATCCATTTTTAATCTCCTTAAATTTGATTGAAAGAGGGTACATCAGGCTGCACCGACAATGCATTGTGAGGCAATTACATTCAAGAAGTTACCCACGAATATTTATGCAGACGTCCTTGGATCTCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //