Array 1 6990-11254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVNP01000007.1 Rothia mucilaginosa strain 268_RMUC 202_431251_12954240_99+,...,9_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 6990 36 100.0 28 .................................... TAATGGCTCCTCAGGCTCCGGTGTACCG 7054 36 100.0 28 .................................... TTCCCTTCACGCAGGAGGGCAAGCTGGC 7118 36 100.0 28 .................................... CGATCCGATGTCGTCCAATGCGTCCCCG 7182 36 100.0 28 .................................... GAGCCTTCAACAGATTCTTCAACATGTT 7246 36 100.0 28 .................................... AGGGTGAGCCTCGCCTCGTTCTCCCAGC 7310 36 100.0 29 .................................... GTGGGGCGCGCACTTTGGAATGATTGCGT 7375 36 100.0 28 .................................... TCAGAAGAAGCAGGAAAAACCCCGTGAT 7439 36 100.0 28 .................................... TGATTTTTCGCACGTTGTCGAGCTTTTC 7503 36 100.0 28 .................................... GATTTGCTGTTCGGCTGCACCGGGCGGT 7567 36 100.0 28 .................................... GGCAGCAAGACAGTGTGTCAAACTGTGC 7631 36 100.0 28 .................................... GGTGCGGCGGGCTTCGTTCACCATCTTG 7695 36 100.0 28 .................................... TCTCTCAATCGTCAAGGTCAGTAGTGGT 7759 36 100.0 28 .................................... GACCCGCGCTGCTGCGCTTGTCTCCGCT 7823 36 100.0 28 .................................... AGCGTGGGTTCCCAGTCGTTATCTTCCA 7887 36 100.0 28 .................................... GTGTATCGCGAGGTGTATTCTCAGCTGA 7951 36 100.0 28 .................................... CCTCTGGCGGTCGCGGGTTCTCCCGCGT 8015 36 100.0 28 .................................... GGTAAAAAAATATCCCCCCAACCCGTAG 8079 36 100.0 28 .................................... CGGCCAGCCCACTTCACATGTGCTTTTC 8143 36 100.0 28 .................................... CGGCAACACGCGCCCACCGACGGGCGGC 8207 36 100.0 28 .................................... GTGCCACTCATCGGCTGAGCGCCAGCCC 8271 36 100.0 28 .................................... GTGCACCAAAGCTCACCCGGTGTGCCAA 8335 36 100.0 28 .................................... GTTGCGCCGGATATCCCCAAAGGTTTAC 8399 36 100.0 28 .................................... AAGTGACTCATAGAGAGGTGTCACTGTT 8463 36 100.0 28 .................................... GGCCGGCTGCGCGGCCGGTGCCTGCTCC 8527 36 100.0 28 .................................... CTTCTATGACGCGCGAATCATAAGGTGT 8591 36 100.0 28 .................................... ACCGTAACGATCATGGGCGCGGTCGCTT 8655 36 100.0 28 .................................... GGTTGCGGTGTGTGTGAAGGTCGAGAAG 8719 36 100.0 28 .................................... AATCGTCTGCACATACCCGGTCAGCTTC 8783 36 100.0 29 .................................... AGGTTAGGGCCTGCAATGTTCAGGGTCTT 8848 36 100.0 28 .................................... CGACGTAGTCAGGCTTGAGGTCACCAGG 8912 36 100.0 28 .................................... TGGGCTACAACCTGTGATGTAGTTAAGG 8976 36 100.0 28 .................................... TCGCAAATTTGTGCCAAAAATTTTATTT 9040 36 100.0 28 .................................... CCGCCTCATTGCCGATGTGCTCAGCGAC 9104 36 100.0 28 .................................... CAGCACGCCGCGCATGGCGTGCAGGGCG 9168 36 100.0 28 .................................... ATGTTGGATAATGCCGCGCGCTGGAAGT 9232 36 100.0 28 .................................... CAGGACGGCGACTTCGTAAACCTGCATT 9296 36 100.0 28 .................................... GATTTGGTTTGGCAGGCGTCGGTTTTGG 9360 36 100.0 28 .................................... ATCATTGAGGGCACCCGCGAGGGGAAGA 9424 36 100.0 28 .................................... TAGGACACCATCGCGGAGAACGCCGGAA 9488 36 100.0 28 .................................... CTATTTCCGCATCCATGACCTTGATGTT 9552 36 100.0 28 .................................... CGGAAGGTCGTAGCACGAACCGCCGTAG 9616 36 100.0 29 .................................... TATTTTTTTGGGGGGGGGGTGGTGAGGTT 9681 36 100.0 28 .................................... GCTTCGATTCCATCGCCAGGCGCTGGTG 9745 36 100.0 28 .................................... GCTCCCCTGAGAAGCACACAGGGCAGGG 9809 36 100.0 28 .................................... GTGCCCATACGCGATAATCCGGGGTCAA 9873 36 100.0 28 .................................... GTACTGCTGTTGATATTGTCCTGAACCG 9937 36 100.0 28 .................................... TGGTTGTTTCCGCATCGGCCGCTGGAAA 10001 36 100.0 28 .................................... GCCGAGAAGACGGCATAGCCGGAGACAG 10065 36 100.0 28 .................................... GCTCGCCGGGCCAGCAGACCCGATTGCT 10129 36 100.0 28 .................................... TGCGCCACTGACTACAGGCGGCTTAGGC 10193 36 100.0 28 .................................... GTGATGCGTGACCATGAGCCCGGGTCAG 10257 36 100.0 28 .................................... AATATTTGGGGCGGGGGTGGCAAGTGTT 10321 36 100.0 28 .................................... GCTGATTCTCCGTCCCCGACCGGGGACG 10385 36 100.0 28 .................................... GGTCATCGGAGAGGCGCAGATTCGGAGA 10449 36 100.0 28 .................................... TCTCCCGCAAACCCCTATCTCGTCATCA 10513 36 97.2 28 ..........................T......... TTCTCAAGGGGGACCAGGGCAGGGCTCC 10577 36 100.0 28 .................................... CCCCTGCGGACGTGGTAGCCGTTCTTCT 10641 36 100.0 28 .................................... AATATTGGGGCGGGGGTGGCAAGTGTTG 10705 36 100.0 28 .................................... GGCTTCCGGGTCTGGTGGAGCAGCTGCA 10769 36 100.0 28 .................................... GATTCCACGATCGCGACGCGCTGGCAGG 10833 36 100.0 28 .................................... CCGACGAAGGCATGACGATCAACCCCGG 10897 36 100.0 28 .................................... AGCCTGGCGCGTCACTCGACAAACTGGC 10961 36 100.0 28 .................................... ACGTATGGAAGCGATACGCGACCCTTGA 11025 36 100.0 28 .................................... CCGGTCTTCGGGTGCATCCACGGGCGCA 11089 36 100.0 29 .................................... GGTGTATTTCGGGGTGTATCGTGAGGTTA 11154 36 100.0 29 .................................... GTCTTTGGCACCGGGTGAAGTTGTGGCGT 11219 36 77.8 0 ...........................GGGGAA.TT | ========== ====== ====== ====== ==================================== ============================= ================== 67 36 99.6 28 TAAGTATATCAAGGAGTATTTAGAAAGAATCCCAAC # Left flank : TGAGGATGGCTGATCCTGTGTGGTTGATGGTGATGTTTGATTTGCCGGTGAAGACGAAGAATGAGCGGAAGTTGGCGAATCGTTATCGTCATGTTCTGCTGGATTTGGGTTTTGACCGTATGCAGCTGAGTGTGTATGCGAAGTACTATCTGAATGGGAATGCGACGGGTTCTGACTTGTTCCGGTTGCAGGTTGAGGTTCCGCCGGGTGGTGCGATTCGCATTATGCGGTTTACGGATGCTCAGTGGGCTGGTTCGATTCGTCATTTGGGGCCGGAGGTGCAGCAGATGGAGGAGAAGCCGGAAGCGTTAGATATTTTCTAGCGGAGCTTCACAAAAAATGAGCCGGTGGGGCAACGACCAAATATGGTCGTTGCCCCACCGGCTCATTTTTCTTTTCGGATCTCGTCTAGAGATGAGCTTCAAGACAGGTATGGGGCAGTTTTTCTCTCAAAAAACTGCCCCATTTATACCCCTGACTAGGGGAAACGCTCGATTACT # Right flank : TATAAAGCTTTTATTGAGTCTTTGTGTATTATTATTGAAAATTATGTATTTTGAGATTTGTAAGAAAAATATGGAATTGGGTGTATAGATGAGGCCCCTCGACCCGCAGCAGTAGACTGCAGGTCGAGGGGCCTCCTCATGCATTAGCGTTAGCTGGTAGAAAGGTCAGCGCCCGAAAACCCGGGAACCGCCCCTTACGCCACCGCCACGGTGCCCTTGGCTGCGGTGCCATTTCGGGTCCACAGCAGGAGCGCCGCCACGCTGTTGATGATGTAGAAGATGTACTTGCCGACGTTCGCGAAGTTGCCCTGAGTCAGCGCCTTGATGCACTGCACGGTGTTGTACAGGAACCAGAATTGCCACTGCATCGTGAGCTTGAGCGCGTTCAGAATGTTTGCTGACAGGGACAATCCAAACACTACGGTCGTGATCCAGAACAGGAACGAGGTCTTGCCGCCGTAGCCAATGTAGTTCGCAATCAGGGAGAACGCGAACGAACC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGTATATCAAGGAGTATTTAGAAAGAATCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //