Array 1 84377-86051 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBC01000002.1 Salmonella enterica subsp. enterica serovar Monschaui strain BCW_2734 NODE_2_length_178818_cov_1.88374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84377 29 96.6 32 ...........................T. CTGGTTCTGGCGTGGAAGTGGGTGAAGGCTCC 84438 29 96.6 32 ...........................T. CCAGTTTCGGCGATCATCATCGCAACAGATTC 84499 29 96.6 32 ...........................T. CACCTTATAATCGACACCTTCATTCAGGAGTC 84560 29 96.6 32 ...........................T. ACTAAATATCAGCTCCGCAAAATCGACCCGCA 84621 29 100.0 32 ............................. TCATCCCTTCGCTGTTTTTCTAAGGCGGCGCG 84682 29 100.0 32 ............................. CCATATACAGTGCCGGGAATACGCATCCAGCG 84743 29 100.0 32 ............................. CAATCTGATGACCCTGCAGCAACTATCAAAGA 84804 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 84865 29 100.0 32 ............................. CGCACGCTGGACGGTAAGACGATTTATGAAAT 84926 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 84987 29 100.0 32 ............................. GCGACATCGAGGACGTGTTAGTGATCAACCCC 85048 29 96.6 32 ............................A GGAAAAGGGGAAATAGACATTGTTGCCAGCCC 85109 29 100.0 32 ............................. CCGGTGGGCGATCCATCACGGCTTTATACAGC 85170 29 100.0 32 ............................. GATTTTCGCAACGGACAGTTACGCGCTCTCGC 85231 29 100.0 32 ............................. TAGTGCTGCCCTCCCCCCCACCTCCCTCATCA 85292 29 100.0 32 ............................. GCAGGCCGCATAAACGGTTTTGCAGGAATGCC 85353 29 100.0 32 ............................. GATTGCGAAAGGCGATAATGAAAGACCTGGGG 85414 29 100.0 32 ............................. GCAACTCCAGAGAGCAATTGCCGATCTCACTT 85475 29 100.0 32 ............................. GGCGGGGCGCTGGGGTTGCTCGGCGGCGTGCC 85536 29 100.0 32 ............................. TCTCGCCAGTGGCCTGAACCGAAAGAGGGTGA 85597 29 100.0 32 ............................. GCTTTCTCAATAAATGACAGCTCGCCACGTAC 85658 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 85719 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 85780 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 85841 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 85902 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 85963 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 86024 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATTATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102211-103522 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBC01000002.1 Salmonella enterica subsp. enterica serovar Monschaui strain BCW_2734 NODE_2_length_178818_cov_1.88374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102211 29 100.0 32 ............................. ATGAGCGTACTGTCATCTTTGCCGACAAAGAC 102272 29 100.0 32 ............................. AGTATTCAGCCGGTTAAAGAGGGTCGACATTT 102333 29 100.0 32 ............................. TTGTTATTTTCTTCAAGGAAGGTTATGACCGT 102394 29 100.0 32 ............................. GTGTAAACATTTCATAAAGAGAGGGTGCGACA 102455 29 100.0 33 ............................. CCGGCTTTTCATCGTCTGGCTTTTGCCTGCTGC 102517 29 100.0 32 ............................. CGATTTACCTATAGAGAACAAGCCTGTCACAC 102578 29 100.0 32 ............................. AGTTATTTTGGTATTGTCTCCGGGGCGAAAAC 102639 29 100.0 32 ............................. GAAAAAATATTACTCACCGCCGCGCTACTGAC 102700 29 100.0 32 ............................. AGGTGGCGGGCAATCCGGCCAGTTTTCTCGTC 102761 29 100.0 32 ............................. AATGTTTCTAAATCTGAACTCGCCGCTTTGTT 102822 29 100.0 32 ............................. CGAGCCGAGTGGGCTGGCCGGGCAGATCTGCA 102883 29 100.0 32 ............................. TTCGTTTGACGACGACAAACAGAACGTCCTTA 102944 29 100.0 32 ............................. ACGGCGGAACGCTGGCCGATAAGGTACGTTGC 103005 29 100.0 32 ............................. GATACGCTCATCAAATCCAATCCGCATAGACG 103066 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 103127 29 100.0 32 ............................. AGCGCGTTATTAATGGTGAATGTTTTCCTGTA 103188 29 100.0 32 ............................. TAAACACGGCACATTCCGTTCTTTTCCCACAG 103249 29 100.0 32 ............................. GTGTTTTTGCATTTTTAGGAGGCTATAAACCG 103310 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 103371 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 103432 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 103493 29 96.6 0 ............T................ | A [103520] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //