Array 1 52660-50413 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIPB01000087.1 Vibrio cholerae strain 2479-86 NODE_2_length_674467_cov_188.495_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52659 28 100.0 32 ............................ TTTAATATGTGCCGATTCCATACGACCACGCA 52599 28 100.0 32 ............................ TACCAACCGTTAACCGTTCAGGCCAAATCAAA 52539 28 100.0 32 ............................ GTTTTGGCCTCTAGCGCCTGAGTAAGCTGCTT 52479 28 100.0 32 ............................ TCATTCGGGATGTGGGCGAGATAATCGGCAAT 52419 28 100.0 32 ............................ AATAGACCACCTACAAACATACCCAGCATAAA 52359 28 100.0 32 ............................ ACAGACAGATCACCTTGGTAGTGGATTTCTGG 52299 28 100.0 32 ............................ TAGAAAAAGGGGAGGCAGAAATTAAGGCGATA 52239 28 100.0 32 ............................ ATGTGGGTTGCTGATACTTTCATCCACTGGTC 52179 28 100.0 32 ............................ GCTGGAAACATGGGTGAATGCACATGTAAATA 52119 28 100.0 32 ............................ GTACGCACTTTACTCAACACCAAGGTTGAACC 52059 28 100.0 32 ............................ TTGGTTGTGCTTGGTGCATCCATTGACGAGAT 51999 28 100.0 32 ............................ TGATCTAAATAATCCGCGCCTAGGTCGTCATT 51939 28 100.0 32 ............................ AATCTCGATAACTTCAACGCTGTTCGGATCAC 51879 28 100.0 32 ............................ TCTTCAACATAACTATAACCAACAGTGCCTTC 51819 28 100.0 32 ............................ GTTCGGGTTCGGGAATATGATGTAATTTGCTA 51759 28 100.0 32 ............................ CAATCACTTTCAATTACCACACATTCGAGTTT 51699 28 100.0 32 ............................ TATCGTCACGAATCTGGTTTTGAAGAAGTAAA 51639 28 100.0 32 ............................ AATAAACTTAACCCCAGATTGTCTCGGTATTA 51579 28 100.0 33 ............................ CACCGACGAATGCAACCGCCGCGCCTACTGCTG 51518 28 100.0 32 ............................ AGAATGAACTCTGAATGCTACGTGATAGTGAG 51458 28 100.0 32 ............................ AGTAGCAAGAACTTTGTCTGAGCCGTCATCCA 51398 28 100.0 32 ............................ TACGCCTCGATGTTATAGGTTTTGCCTATTTC 51338 28 100.0 32 ............................ AATGTATCAAGCGAATCCATGCGCAAATCTTT 51278 28 100.0 32 ............................ GTGGAAGGTTTTTTTAGATTAAAATGGAAGTC 51218 28 96.4 32 A........................... TGACGTTTGGTGCAAGAAAACCAAGGCGAAAT 51158 28 100.0 32 ............................ AGCATCGCTTTTGCGTTACCGTTGTTCGCTTG 51098 28 100.0 32 ............................ ATTGTCCCAAGCGGTTTCAGCTTCGCTTAGTT 51038 28 100.0 33 ............................ ATAAATAGGAAAGTGAACGGAAACGCCCGTTAC 50977 28 100.0 32 ............................ TTATGATTGTTGATATAGAGCAATGCAGAACT 50917 28 100.0 32 ............................ TGTCCGGTCGCCATTGGCGTCAAGCTCGTATA 50857 28 100.0 33 ............................ ATAAATAGGAAAGTGAACGGAAACGCCCGTTAC 50796 28 100.0 27 ............................ TTTGATGACAGCGCGCATAAAGGGTGC 50741 28 100.0 32 ............................ TTATGATTGTTGATATAGAGCAATGCAGAACT 50681 28 96.4 32 ...........................G GTTCTGGATAGTCTGAATCTCGATAGAATGGG 50621 28 100.0 32 ............................ TTGTCTAGTAGTTCAATCATTTTTTGCCGCCT 50561 28 100.0 32 ............................ TGTCCGGTCGCCATTGGCGTCAAGCTCGTATA 50501 28 100.0 32 ............................ TTATCGCGGCACGCTTGTTCTGTGGTTGGATT 50441 28 92.9 0 ......................G.A... | T [50421] ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTTTTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATCTTATGGTTGCAGATCTCAAAAGTTGGGGTTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTTATGCCTCTACGGATATGAGTCAGTCAGCCTTTTTACCTAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGTCTTGGTGAACTTTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGCGACGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //