Array 1 85306-84082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWMN01000003.1 Neisseria meningitidis strain 100578 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 85305 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 85239 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 85173 36 100.0 30 .................................... TTTTCATCGTAACATAGTTGCTTGCGCCAA 85107 36 100.0 30 .................................... ACAATGTTTCGGCGCAACACATCAGCAGGG 85041 36 100.0 30 .................................... AAATTTAAAAACTTCAAAATTAAATACAAG 84975 36 100.0 30 .................................... AAGGGGGGTCAGGGGGGTCGGAAAAAATAC 84909 36 100.0 30 .................................... ATCAAAAACGCTCAATATAAAAAATCAAAA 84843 36 100.0 30 .................................... AATTTACCAAAACAAACCAATACCATGCAC 84777 36 100.0 30 .................................... GTGTGTTCGGCAACTCTGACCGCATGACGA 84711 36 100.0 30 .................................... ATACGAACTCATCCGGAGCCACGCCGAGCC 84645 36 100.0 30 .................................... AAAAATAACAGACTCATCAGAAAAATAAAT 84579 36 100.0 30 .................................... CCAGCCTACAAACCCTACAATCGCAATCAA 84513 36 100.0 30 .................................... TATCTTTCTCGCCAAACCAACCGTTGTAGG 84447 36 100.0 30 .................................... ATGTTTTTGGCGAGATGGTCGTATGTATCG 84381 36 100.0 30 .................................... CCTGACAGGCTAGGATTTCCGGAAAATAAT 84315 36 100.0 30 .................................... CCAAAGCAATTACTGATAATATAACGGTCA 84249 36 100.0 30 .................................... ATAGCTGTAATTACCATTGTCAGCAAAAGG 84183 36 100.0 30 .................................... GCAGCAACGCCGATAGAGCGGCATAAATGG 84117 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGGAAAATCCCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //