Array 1 970499-971990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075112.1 Salmonella enterica subsp. enterica serovar Corvallis strain CFSAN059903 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 970499 29 100.0 32 ............................. CCGGCTGATCCAAAGGCGCTGAACCAACTGGC 970560 29 100.0 32 ............................. GTAGGGCAGATGCGCAGGGAGCGTGACGAGGG 970621 29 100.0 32 ............................. AAATTTTAGCGGGGCCATAGCGCGCGCCTGCC 970682 29 100.0 32 ............................. CCGCATTACACGTATTTAATTTATTGCATGAG 970743 29 100.0 32 ............................. TGAGATCGGCAATTGCTCTCTGGAGTTGCCAT 970804 29 100.0 32 ............................. GCCAGACAACAGCAGACACCTACGCAACTGCA 970865 29 100.0 32 ............................. ACAACTTCAAACGGTGATAACCAGGAAATAAT 970926 29 100.0 32 ............................. TTAGCCTCAACGTAAAATCCTGGGCTTTAGGC 970987 29 100.0 32 ............................. ATCGCGTTTTCCCTGGCACTTAAGGAGGTTTA 971048 29 100.0 32 ............................. CTGGACGGTCGGATCGTGGGCAATTATCCGTT 971109 29 100.0 32 ............................. ATTTTGCGGCTGTATACGTCCTGCCAGAACCA 971170 29 100.0 32 ............................. CAGGTTTATTTTCCGCGCGGGCAGGCGCTGGA 971231 29 100.0 32 ............................. TTATCAGCACATAACGGAGAGCGAGGCGCAGT 971292 29 100.0 32 ............................. ACCTGCCCAGCGGGGAATACTGAATGCATATC 971353 29 100.0 32 ............................. GGGTGCGCACTACTGAATACAAAATTAAAAAG 971414 29 100.0 32 ............................. TGCCAGCTCATCAGCGCTCATAACGGGCTCCA 971475 29 100.0 32 ............................. GCATGACTGTATGGCGTACAAACTGGATAGAT 971536 29 100.0 32 ............................. GATCGTGATTACGCTAAATATTTAATGAGAGG 971597 29 96.6 32 ............................T GCCGATTCAATAAAAACAGATAATCTGGCCGC 971658 29 100.0 32 ............................. GCTGTTATCGCCAGTATGGGCGGCCTGTGGTT 971719 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 971780 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 971841 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 971902 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 971963 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 988689-990975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075112.1 Salmonella enterica subsp. enterica serovar Corvallis strain CFSAN059903 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 988689 29 100.0 32 ............................. TTTTTTAATTCTGAGCCGTTTTTCATGGCATT 988750 29 100.0 32 ............................. TCAGGGAGACGTCCCCACGACGCAGATTTGCA 988811 29 100.0 32 ............................. AGGTACTATATCAGGTTATTAACTACGGAATA 988872 29 100.0 32 ............................. ACGCAGACGCGGCGCCCGGTGAAGAGCGTCCG 988933 29 100.0 32 ............................. CTGGTTTTGCAAATTTACATGATCAATAATAC 988994 29 100.0 32 ............................. GCGGCGTCAGATTATTTTAACATTACGCTAAG 989055 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 989116 29 100.0 32 ............................. GCGTATTTACTAAATAATTTACGTGTGCGCCG 989177 29 100.0 32 ............................. CGCGTGCCGCCTGGTTGCAGATCTTGACGTAT 989238 29 100.0 32 ............................. AATACGTAGCTGAGTCACTTTCCCCTTACTAT 989299 29 100.0 32 ............................. TTTTAGATATATTTCGCACGACGTCGAGTGAC 989360 29 100.0 32 ............................. TTCGGGCCAAATCTCGGGCGCCCGCATGTTGA 989421 29 100.0 32 ............................. CCGTTTGAGGGCTATTGCACTGGAAATAACGT 989482 29 100.0 32 ............................. GAGTTTTCTCACATGCCACAGGCAGCACAACG 989543 29 100.0 32 ............................. AACGTCTTTATGCGGTTTTGTGTCGCCGGAAA 989604 29 100.0 32 ............................. TTGAGCCTCAGTAGCTCCATTAATACGCGCAG 989665 29 100.0 32 ............................. CTGGGCGAATGGATGCGCACCGACGATAACAT 989726 29 100.0 32 ............................. TGAGCGTAGAGGGTTTTCACCCGGCTGGCGAT 989787 29 100.0 32 ............................. CTGATTTGTGCGGGCGTGCCAGAAATTCCATG 989848 29 100.0 32 ............................. GGCTTTTCCTGTCAGGAGTACACAGGGTGGGT 989909 29 100.0 32 ............................. GATTTAAAATTTTTAAGAGCGGCACCAAAGGT 989970 29 100.0 32 ............................. CATTGAAAACTATGTTCATGCCAGCATTTACT 990031 29 100.0 32 ............................. CATGGCGGCGCGGCAGGCGCTCCACAGCTCAT 990092 29 100.0 32 ............................. TGTCTACCGGCACGACCTATTCCAACAGCGCC 990153 29 100.0 32 ............................. CCCACATCGTTACACCGAGATCATTCAGCTCG 990214 29 100.0 32 ............................. ATCGCTATATTTAGCCCGCAGCTCACTAATAA 990275 29 100.0 32 ............................. GTGAAAACGACGGCGACGGAGCAGGGGAACGC 990336 29 100.0 32 ............................. GTTATGGTGCGGGTGGTTCTGGTGGTGGTTCT 990397 29 100.0 32 ............................. CGCATAAAATCTATGCGGTTTTACGCCATTAT 990458 29 100.0 32 ............................. ATGCAGGAGGCCTGCATGTGGGCGTGTCGGGC 990519 29 100.0 32 ............................. GACCGATCCGGGAACAACCGGAACAACGCGGG 990580 29 100.0 32 ............................. CAGCTCGCGCCCGAACTGCAACGGCTGGGATG 990641 29 100.0 32 ............................. GGTTAGAGCTATCTTTGAAAACGTTTGAGAAC 990702 29 100.0 32 ............................. GTCCGTGAATCAGGGGCGCGATAAATTTTTGT 990763 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 990824 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 990885 29 96.6 32 .............T............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 990946 29 93.1 0 A...........T................ | A [990972] ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTATTGAAAATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCTGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACTGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //