Array 1 204374-202425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJRE010000026.1 Acinetobacter baumannii strain 173762 NODE_34_length_206536_cov_93.048019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 204373 29 96.6 31 ............................T GTAGTTGGTGTTGATGGTTGGGCACGAATTA 204313 29 100.0 31 ............................. ATGATGCAGTTGCAGGATCAACTTGCAAACC 204253 29 100.0 31 ............................. AATTATTTTCTTCAAATGGGTTATGAGTGTC 204193 29 100.0 31 ............................. CTCCCCGACCTTGCCAAGTGTCTCTTGTTGA 204133 29 100.0 31 ............................. GTGGGCTTTTTGGCGTTCCTCATTGAACATA 204073 29 96.6 31 ............................T TTAATGCGCCAAAAATCGGGTCAAACGCTAC 204013 29 96.6 31 ............................T GAGCAGGTCGATTATTCTGAACCTGAAAATA 203953 29 100.0 31 ............................. TCAGAACCACCAGTCCCAGAAGATGAAGAAC 203893 29 100.0 31 ............................. TCAGAACCACCAGTCCCAGAAGATGAAGAAC 203833 29 96.6 31 ............................T TGTACAAGTTGACTTCCTCCAACAGTATTGT 203773 29 96.6 31 ............................C GTTAGCGTCAGGTTGAGATAATTGGCTACAA 203713 29 100.0 31 ............................. CTATATTGGGCGGGGGTTTTTGGTTGGTTTG 203653 29 96.6 31 ............................C TATGAGCCATGGTTCTTCAAATTCATTGCCT 203593 29 100.0 31 ............................. AGTCCAGAAAATAAAGATTCTTTATTACTAA 203533 29 100.0 31 ............................. ACAGAGGTTCAAAATCACCTAATTCCGTTAG 203473 29 96.6 31 ............................C TTAGAAATATTATTTATTTATCAAGAAGTCC 203413 29 96.6 31 ............................T GTTTCAGTGCTGCTACTGTCTTGCTCATATA 203353 29 100.0 31 ............................. ATAGGAATGAGAGCATCGGCACACCAAACAA 203293 29 96.6 31 ............................T TCGCCATTGAGCCAATTATATAGCTTCGGGA 203233 29 96.6 31 ............................T GTCAGGTCTTAAAGTGCATCTGTCAAGTAGT 203173 29 100.0 31 ............................. TACCCGTATAGTGAGTTGGCACAGATTCATA 203113 29 100.0 31 ............................. TCAGCAGTACCACCATCAGTTCGCCATGAAC 203053 29 96.6 31 ............................C GGTTCAACACAACAAGTTCTTGAAGCTGATC 202993 29 96.6 31 ............................T TTCTGCAGGCGAAAAAAAAGCGACCCGAAGG 202933 29 96.6 31 ............................T TCTGGTCCCTGGTAGTAAAGCCCCCAACAAC 202873 29 100.0 31 ............................. GATTGAGCAAGAAGTCATTGATCGCCAGAAC 202813 29 100.0 31 ............................. ATACCCAAAACATCACTACAAACACGAATGA 202753 29 96.6 31 ............................T AGGAGAACATGAAGCTGCTCAATATAAAACA 202693 29 96.6 31 ............................T TACTTGCGGTGGCCTCAACTACAGCTGCTCA 202633 29 100.0 31 ............................. ATACGTGCGATTCAGCGAAGTACTGACAAGC 202573 29 96.6 31 ............................T TGAATCGTGGAAAGTAATAACACCATGTAAA 202513 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTGTTG 202453 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 33 29 97.7 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GAAAATAACTGCTCCCCTTGATCATTAAAATAATTTTGGCAAAAATTTCCTATTTGTTGATCATCATGTTTTGCAAATAAACAATTTACTTGATCAAAACGCAAACGGGCATTAATGACTAATTGAGATTGATGATCCCATGGTAAAAGCTCTTTTAAATCTTGAGATGAATAAGTTGATGTTACAGATGAACCATACCCTTCATAGCCAGGATATACAAATACAGGTCGACGCTGCTTACTTTGCTGCTTAAGTTTTTCAATATCGCGTCGCTCACAATAACGATAATTCCACTGGGGAATCATAATATTGGGTTGTTGTACTTTTTCTAACCGATGACGATTAACTCGGCCTGCTGTTTGTACAATTGATTGTACACTTGATGCATCAATAATAGCCCAATCAAAATCATGATCTCGCCCAACTTCTTCCACTGGTGTTGCAATCACAATAAATGGAATATTTAGAGAATTAGATTTTTGAATGAGGTCTTCTCTCAC # Right flank : TTGAATCTTAAAAATAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGTCAATTGAACTCGAATCCTAACCTATTCATTCTAAAGCTCTTTTATTGAATAAAAAAATTCATTGACCCAATTTTGACCCAAATTAGATTTAGTGCATTGAATCACTTTAAAATCTTGTTCAAATCCGAATTCAGGATTTGAAGTGGCGTACTGATTATACCAACATCGAGCACGCTATAAAACGATATATTATAACATACCATTTCTTTGATTTTCTTTTTTGATGTATCATTCTTTTTAAATATATTTAGGGACAAGCTAATGTTTGAAATTATTGATGATTTAAAAAATAAATTAGATCAGCATCGTCCCCTATCACCTGCGATAGTAAAAAATTTACAAGAAGACCTTATTGTACGATGGACTTATCATTCCAATGCTATTGAAGGCAATACACTTACTCTATTAGAAACCAAAGTTGTACTAGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59420-65514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJRE010000002.1 Acinetobacter baumannii strain 173762 NODE_2_length_149621_cov_90.988304, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 59420 30 100.0 30 .............................. TCCATTCCCCAACAAAAGGGGCAAGGTTAG 59480 30 96.7 30 .............................G TACGCTCTACCAGATCAACAAAATATCTAA 59540 30 96.7 30 .............................G GTAAAGTCCTGGTTCATACCTGGTAGTAAC 59600 30 100.0 31 .............................. GAAGCCATTGAACGCTCAGAAGTTGTTATGA 59661 30 96.7 30 .............................A ATAAACCCTTTGACGTTGACCAATCGCAAA 59721 30 93.3 30 ............................AC TGAAAGAGTAACCAACTGTTTAAAGAAACG 59781 30 93.3 30 ............................AG ATCCAGAACAAACGCATTTAAGAATCTAGG 59841 30 100.0 30 .............................. GTGAATCACAAGTGTTATATGAAGCATGAC 59901 30 100.0 30 .............................. TTTTAGGGTTCCATTTAATTTTATTTTTAT 59961 30 100.0 30 .............................. TCAAGAGCTATTAGAGAGACATGGTTAAAA 60021 30 93.3 30 ............................AA TGAATCAACAAAAACGCATTTTAATGGATG 60081 30 96.7 30 ............................A. CCAAACCATTAGACGATTATGATAAAGCTC 60141 30 96.7 30 ............................A. TAAATCCAGATTTCCCAACTATTCGCTCAG 60201 30 96.7 30 ............................A. TATCGCTTTCATTTTAAAGACGAATATCAA 60261 30 100.0 30 .............................. CATGAACTAATTTAAAAGCAACATTAGTAA 60321 30 96.7 30 ............................G. GCCTGTAGCAAAAGCAAAAGATTTAGCATT 60381 30 96.7 31 ............................G. AGCAGTAACCAAAAAAAACCGTTCAGGGGAA 60442 30 100.0 30 .............................. CTTAGCTGATCTGCGGATAGTTGCCACAGT 60502 30 93.3 30 ............................AG TTATAGGCATAGAGTGCATGGGGCATGTTG 60562 30 96.7 30 ............................A. AAGGAAAGGGTAGGCGTTCAGACCGTAAAG 60622 30 96.7 30 ............................G. ATGAAACTAAAAGCTATGCTCAATTAAAGA 60682 30 93.3 30 ............................AA GATCAGGGGCAACGAAAACAAGGATACCCG 60742 30 100.0 30 .............................. TACCCGATGCAGGCTGACCGCCAGTAATGA 60802 30 100.0 30 .............................. TCTTAGCAAATAAACTTGCGTAAGTTCCGT 60862 30 93.3 30 ............................AG TAAAGAACAACTTTCTTTAGAGTTGCCTAT 60922 30 100.0 30 .............................. AACTGAACTTTGCTATCAAAAAGTTTTAGT 60982 30 100.0 30 .............................. TAACTTTCAGGTCTGCCAACTCTGCTTTTC 61042 30 96.7 30 .............................A ACCCGATTAATCCCTATGACTGGCGAAAGA 61102 30 93.3 30 ............................AG TACGCAAAGCTTTAAATCATGGTTTGGTAA 61162 30 100.0 30 .............................. AATACTTCAATTGCACCGAAAGCTTTTTCA 61222 30 93.3 30 ............................AC TAAGCGTTCCATCTCGTACCGCAACTTAGC 61282 30 93.3 30 ............................AG ACGAAGGACATTTAGTCGGAGGATCAGGAA 61342 30 96.7 31 .............................G AAAGAAGGTCCTGACAAGTTAGAAAATGAGA 61403 30 100.0 30 .............................. GTAGTTCATCTGCCTAGCTCCACCATGTTC 61463 30 93.3 30 ............................CA ACATACCACTACATAAGCCCTTGTATATAT 61523 30 100.0 30 .............................. TGATTTACACAGCGGGCTGATGCGGTTTTC 61583 30 93.3 30 ............................AG TTATTAATATCTTTGCGTGCAAGATTACGC 61643 30 93.3 30 ............................GA AACGACATTCAGTTCTATCCCTTTTAATTC 61703 30 93.3 30 ............................AA ATGGTGGTTCATTGTGTCAGTTCTCTATAG 61763 30 100.0 30 .............................. TTATCGATGCGGAGACAAAACCATGCGCGG 61823 30 96.7 30 .............................G GAATGAACTTGATGTACAAGATCGTGAATT 61883 30 100.0 30 .............................. TTGCGTCATATCACGTTGAAGTTGATGAAA 61943 30 96.7 30 .............................G TCATGGCAATCGCGATACTTAAGTTGTTTT 62003 30 93.3 30 ............................AA TAACTCAGGCTTTAAGTCATTAGCCATATT 62063 30 96.7 30 ............................A. CTTCCATAAGTTTACGGCAATCAGATTGGC 62123 30 100.0 30 .............................. GTTATTCATATTTTTGTAGCTGGTGCAATA 62183 30 96.7 30 ............................A. CAAAGTGCAGAGATGAAGAAGTATTTTTAC 62243 30 93.3 30 ............................AC CAAACGCTTTAGCCTTGATATGGTCAACGT 62303 30 96.7 30 .............................A CGCGATCCGACAAAAAGAAATGCTGAATTA 62363 30 93.3 30 ............................GA GCCAAAAATGTTATGACCCTGCATAATCTT 62423 30 96.7 30 .............................G CTCCAGACGATTGGCGTGATACTCCGGATG 62483 30 93.3 30 ............................AA TCGTCTGGAGCAGGTTCAACTTCAGGTATT 62543 30 100.0 30 .............................. AGCAAAGCGTGATTCAGGTTCTTGATACCA 62603 30 100.0 30 .............................. TGGATTGTTTAAAAAACCTAAATGAGTTAT 62663 30 93.3 31 ............................CG CGAAAACAAGAACAGTTACTAAGATTGCTAT 62724 30 100.0 30 .............................. GATCAATCAACTTCTTACAGTCTGATTGGC 62784 30 93.3 30 ............................AG ACGTATATATGGACGTTCTGCAAAGTCTTT 62844 30 96.7 30 .............................A ACGGAATCAAAATTGCAGCAGCAGCTACAG 62904 30 93.3 30 ............................AG AAACGGGCAGAAGTTTCAGGACCTGTGGAA 62964 30 100.0 30 .............................. AAAAATGTAAATAAACTGATGGCTGGCTTA 63024 30 96.7 30 ............................C. TGTCGCTTCACGCGCACCTGTGCCCTGTAT 63084 30 96.7 30 .............................G CTTCAGCAGCGCAGACTCTCAGGAACTGAT 63144 30 93.3 30 ............................CA TTGGTGGCAATTGATCTTTTAAGCTGATCA 63204 30 96.7 30 ............................A. TCTAACAAGTGAATATAAAGAACTCACAAA 63264 30 96.7 30 .............................G AGCTGTGCATTTACGTTCAAACTGATAATT 63324 30 100.0 30 .............................. TAAGAACAATTCCAACAAGAGACAGATTTG 63384 30 93.3 30 ............................AC AAAATCCAATCGATCACGACGGCTTTTCAA 63444 30 96.7 30 ............................A. GAAGGTCGTACTTATCCTTATGTTGAACTT 63504 30 100.0 31 .............................. ACAAAATTTAAGCAACTTTTGCTTATCTTCA 63565 30 100.0 30 .............................. GTTGTCATGCAAGTTCTGCAAAAATGCCTT 63625 30 96.7 30 .............................A CGTTTTATAGACATTTATCTGAACTTTGCG 63685 30 90.0 30 ...............T............AA TGTATGTTTATTTTGATGCAGGCGGTAAAA 63745 30 93.3 30 ............................AA CGAGAAATTGGAACTACAAAAGAACCAAAA 63805 30 96.7 30 ............................C. ACAAGTTACCCTTAGAAGATGAGGGTAAAA 63865 30 96.7 30 .............................G AAGAATTTGCAGGCCGTAGATTAACTAAAA 63925 30 93.3 30 ............................AA GAAATATTTGGAAGTTGCAAAATATTAAAA 63985 30 100.0 30 .............................. TCTTTTGTAAGTCAGTTTTAACTTTATCTA 64045 30 100.0 30 .............................. CAAACCTTTTATTGATGAAATGCAACAAAA 64105 30 96.7 30 .............................G ATCCGCCTCTTGAATGTCCAGATATTGGCT 64165 30 93.3 30 ............................AC CACCTGCATGACGATCTACATCGGCATACA 64225 30 100.0 30 .............................. CTTGAGCCATTGTGCGGCTACCTTGTCGCA 64285 30 96.7 30 .............................A CCCAAAGAAAAACGGGTAATCAAACGGGTA 64345 30 93.3 30 ............................AA TTTGGAGAACTCCGCAGAAAACAAACTCTA 64405 30 96.7 30 .............................C CGCTTGTCTGTCTCTAACTTCCTGCGCTAT 64465 30 93.3 30 ............................AG ACTGAAATTGTTGTGAAGCGTTACCAACGT 64525 30 96.7 30 .............................A AACGTTCAAAAGCTAAAACAACAGCTGAAG 64585 30 96.7 30 .............................A CAAACACAGCTTTAGCAGCAACAGAGTTAC 64645 30 96.7 30 ............................G. TGGCAGTAAATCGCATGACATTGCGTTATG 64705 30 93.3 30 ............................AG CAAATGGCAACCAACTACCTGCTTCATCAT 64765 30 93.3 30 ............................AG ATGTTGAATTGTATAACATGGATGCGTTTA 64825 30 93.3 30 ............................AC TTTGGAATTCGTTTATGCAATTCGCGCATT 64885 30 93.3 30 ............................CG CAAGGGGCTTTTTAGTGCCTAGCTGCTCGA 64945 30 100.0 30 .............................. CGGCACCACCCAGAGTAACTTTACCTTTAG 65005 30 96.7 30 .............................C AAACTCACTTCTTAACTTATTCAAATCTGT 65065 30 93.3 30 ............................CA CGCGAAGTACATCCCCAAGCATCAAGCTCA 65125 30 93.3 30 ............................AC AGGAAGTTAAGGACATTGAACAGGCAATGG 65185 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 65245 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 65305 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 65365 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 65425 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 65485 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 102 30 95.8 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATT # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTCTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //