Array 1 58406-58963 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAH01000002.1 Megamonas funiformis strain AF12-42 AF12-42.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 58406 30 100.0 36 .............................. AATTTTTTAGAAAATCCATTTAGAGAATACATATTA 58472 30 100.0 36 .............................. GCAGGAATATTTTCTTTTATTCTTTGTAAAATACCA 58538 30 100.0 35 .............................. TTAGGTGTTCATGCTTCTAATCCTATGCACCAATT 58603 30 100.0 37 .............................. GCCATTAATCATTACCACCTTAATATCACTATTATTG 58670 30 100.0 36 .............................. GTAAGTTCACCGCCACCTATTACAAAACCGATAACG 58736 30 100.0 35 .............................. CACTTTTTAAATATATGCAAGTGTTTTTTTTATTA 58801 30 100.0 36 .............................. CTACAATACTTTACACGACTATTATTAGTGATAAAT 58867 30 96.7 36 ...........................T.. CCTATACAATCATAATCTTCATTGGCACATACCCAT 58933 30 83.3 0 ...............A.A.....TA....A | G [58960] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.8 36 GATAAATATCAACAGGTGCTGTACGAAAAC # Left flank : CAACTCTAATTAAGGCTTTAAAAGATATGTAAAAATTATATAAGCGTTCATCAGAGTGAGTCTATTTTATAGATATTACAAAAGCTAGTAATTTTATAAAATGGTCATGAGGAATATTATAAAAATAGGTGATTTTGTAATAACTAAGAATATCGCCAAAGATGATGACTATTTCTGTAAAATAAAAAAAGCTGGTGCAGTCATTTAAAACTACATCAGCTTTTAAGATAATGAGATTATTTATAGTATATATCGTATCATTTTAACTTTGGTATCAATCAATGAAAAATTTAAATTAATGGTGGCTCAATATTACTATGTTAATTGATGATGCACATATTTTACCAGCTAATTTTTTATAAAATCTTAATAACTACTGTGATTACTAACTTTATAGATTTATAACCAATATTTGCCATTTGCTGGTAAATCTTTTTAAAGTCTTGCAATATTAATAGTTTATAACTATAATGTAATTAATAAATCCTAATAACATTAGG # Right flank : AATTGAATATGTATTATTTGGAGTATGGCGGTTATTAATAAAAATACCGCCATATTTTGATATATAACTATTAGTCAAAACTAATTGATATCTTGTTATATTCATATATGGCGGTTAAAATTAACGTACTGAAAACGTACTATTATAAAAAGAACAGAAAAAAATAGAAATATTTAAATATAAAATAGCCTATATTATATAGGAAGGAAAAAGATAAAAATAAGGTGAAATTTGATTAAAAATATATGCTGAATAATTAAGAAATAAAGTCGTAGCCTTTTATTAAAAGGTTGCGGCTTTTTGTTTTACAATGATAAAATTTATTAGATATTTTATTTTACATTATTGGCGAAGTTTAAATAAAATAAATATTATTTTATCCTTATTATAATAATTTATTAAGCTATAAAGATAGAATAATCAGCATAAAAAGTTGTTTTATTAGTAAAAAACATGTAAATATGTAAACTTTTTTCTTGACTATGTAATAGATAAGTTGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGGTGCTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 32738-31726 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAH01000019.1 Megamonas funiformis strain AF12-42 AF12-42.Scaf19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 32737 30 100.0 37 .............................. TTTGATTTTCTGTGAGCACATCTGCACGAATTTTATC 32670 30 100.0 34 .............................. TATAAGCCAAAAAGATTTAGTTATTGCCTATAAT 32606 30 100.0 35 .............................. CAGGATAAGTTATTTTTAAGAATTGAAAAGCCAGA 32541 30 100.0 36 .............................. ATCAAAGGAGCATATGCTCCTGCTTCTGATAATAAT 32475 30 100.0 36 .............................. TCCACAATTAGATAAACTTTGTAATTTTTTACTAGC 32409 30 100.0 36 .............................. TTCGGTAGAGGATGGAAAATAAACAATACTTTAATT 32343 30 100.0 36 .............................. CCATCAATCATCTCCCAACTTCTAGAATACTGTTGA 32277 30 100.0 35 .............................. CTATATGTCATAGCAAAGCATTTTGTAGCAAATGC 32212 30 100.0 36 .............................. TGATTTAAGACTACAATAGGGATTTCATCTGCTTCT 32146 30 100.0 35 .............................. AATAATATCACCATGCATGGCGATAACTACAACAT 32081 30 100.0 34 .............................. TCATAAGACTTTTCTTCATCTGGTGGATTTACCA 32017 30 100.0 36 .............................. CTACTCGAAGATGAAGCATATAGAAGGGCAGTAAAG 31951 30 100.0 35 .............................. TTAAATACTTTTACAAAATTTGATTTTTCAGTGTC 31886 30 100.0 35 .............................. GACTTTTATGAAAATCAATCCTTTTCTATTATAAA 31821 30 96.7 36 ....................A......... TCCATATAATAAACTTGTATTTCACGGATAGTTCTA 31755 30 93.3 0 ........................C.A... | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.4 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TTATATCATAATTATTCATAAATTCTAAGACAATACGAAAAAAGATTACATATTTTTAAGTTTTACTATTGAAAATTATTTATTTATTTATTAAATTTTGTAACATTTTAGTCATATGAAAAAAATTATAAAAAAGTATTGCAAAATACATAAATGAGCAGTATAATAATTTTTGTTGTTAATGACTCACTAGCTCAATTGGTAGAGCATCTGACTCTTAATCAGCAGGTTCCGGGTTCGAGTCCCGGGTGGGTCACCATATGATTTATAAAATTAAAGCAACTATCAATGATAGTTGCTTTTTGTTTTTTGCTTAATAAAATTTTATTTATCATAAAATTACCAGCTAAAATTAAGAAAAACTCCTCTAAAGCTTGAAAATTAAACCTTTTTATAAAATCTCCAAAAATCCTATTATCGCTGGTAAAAAATAACTAAAATCCTTGTATATCAATACTTTTAATAGTATAATGAAAGTCATAAAGATTGATTTTTCTAGC # Right flank : CTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTTTATTTAGAATTATTTTTCAATTCCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAGTCTGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCTCCTGAAAGTAGTACATCAGGTACGCTAAGACCTCTATACTCACGTGGTTTTGTATATTGTGGATATTCTAAAAGCCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAACCTAATACGCCTGGAAGCATTCTTGATACAGCATCAATTACCACCATAGCTGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAGATAAATATTAACTGATCAAAATTAGCAAGTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 3812-3119 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAH01000077.1 Megamonas funiformis strain AF12-42 AF12-42.Scaf77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3811 30 100.0 36 .............................. GCTGAAAATAATCTTGATGATACTTCAGCTAAATTT 3745 30 100.0 39 .............................. TGTATTAAGCTAGATACCCTTATCTCCTGGAGTGGTATT 3676 30 100.0 35 .............................. TGTAGCTGGGTTGAACGTGTTGCAGATAATGTATT 3611 30 100.0 36 .............................. TTACTTGGAGATTTAAATGGAACATCATCATAAGAA 3545 30 100.0 37 .............................. TAAAAATCTACGTGTAATTGCCACGCTAGATAATTAA 3478 30 100.0 36 .............................. CCAGTGAAGAAAATTTCACCACCCCATGAAGATATT 3412 30 100.0 34 .............................. ATAGTCGTGAATTAAATTCTATCAAACTATAAAA 3348 30 100.0 38 .............................. TAGAAAATGACGATATACTTAATATAGACTTTTACGGA 3280 30 100.0 36 .............................. TCTGTTTTATCCTGACCGCATGGATCGTGATGAAAC 3214 30 100.0 35 .............................. TTTGAAAAACTTGATTTACTGTTAAATAAAATGTT 3149 30 93.3 0 ..........................A..A | T [3121] ========== ====== ====== ====== ============================== ======================================= ================== 11 30 99.4 36 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : CAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATCATTGGTATGGGCGGTATTGCAAGTGCAGAAGATGCTATTGAATTTTTGCTTGCAGGTGCAACAGCAGTCGCAGTGGGAGCACATAACTTCATTGATCCATCAGCATTAAAAGTAATTGCAGATGGTATCGCTGAATATATGCAAAAACACAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTACTAAATAACCTATAAAGCTAAGAAATATAAGCTTTATAGGTTATTTTTTTATATAACTAATAAAAATCAAAATCAGCTGGTAAAATTTTTTTATATCCTTGAATAGCAAGATTTTAGAGACTATAATAAAAAAAGAAATATTAATAAATATAGG # Right flank : AAAACTTATTGACAGTGGATATAGTTTGTGATATATTAAGTTATGTTGTATTTGAGATGCAACGTATTCCACAAGAAGAAGTCACCACTTCTCACCTTATGGCGTGCTAGTCACTAGGGTTACTAATTAAAACAAAAACGTTTAACGTATATTTTAATTTGTAATATCAGAGGGTGACGTGCGTCATCCTCTTTTTTGTGTATATAATAAAAATAATATATAAATAATGAGGTGTTTTCTATTAGTAAAGAAACTTTAAGAATTAATGGCGAAATCCGCGCTAGAGAAGTTCGTGTGACAGATGCTCAGGGAGAACAGCTTGGTATTATGTCTACAAGAGATGCTCTTCGTAAAGCAGAAGAAGCTCATTTAGACTTAGTAGAAGTTGCTCCAAAAGCAAAACCACCTGTTTGCCGAATCATGGATTTCGGAAAATATCGCTATGAACAACAAAAACGTGAAAAAGAAGCGAAGAAAAAACAGAAGGTTATCAGTGTAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 3039-2418 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAH01000092.1 Megamonas funiformis strain AF12-42 AF12-42.Scaf92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3038 30 100.0 36 .............................. GTTCAAGTCCGAGTATCATCTCCACGAAAGAAATAA 2972 30 100.0 33 .............................. GCGTAAACAGGTTTGCAACATTTGTTGAGTAAT 2909 30 100.0 36 .............................. TTGGCTTAATATGCTTAACAAGGCCCTAAGTGATGA 2843 30 100.0 39 .............................. AGAGTTTGCCGAACTTCCTAAATTAAATGCAGCGTTTAT 2774 30 100.0 34 .............................. ATATCTTTTAGCATTAAAAAATGCTGGCGATATA 2710 30 100.0 36 .............................. TTATCCTGTTCCATTTAATCACTCCCTATTAACCAA 2644 30 100.0 35 .............................. AGATATAAAACAGGAGAAATTAAATAAATAACGAA 2579 30 100.0 36 .............................. TCACAATACCAATAATTACCATCTATACAAATATTA 2513 30 100.0 36 .............................. TTCCTAGTTTCATTAGCTACTTGCTCCTCCTCTTGC 2447 30 80.0 0 ................T......CAAA..A | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.0 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : TATCCTCTTGCTAAAAAATATTTAAAAGGCTGCAGTGGTGTTATCACTTTTGTAATCAAAGGTGGCAAAGAAAACGCTGTTAAATTCATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCCGATATTCGCACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTCGAAGCTGCTGGTATTAATAGTGGTATGGTTCGTTTCTCTGTGGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTTTTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTTTATTTTCCCAGCCATTTTCTAGTTTAAAACCTAAAAGCCTTATAAATAAAGGATTTATAGAAAATCACCAAAAATCCTTAATCGCTGGTAAAAACTTATATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTATTAATTTTACTGGC # Right flank : ATAAAAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTACTAATTTTATAATGTGGAAAAGAAAAAGTTTATTAAAATTGGTACGGCTACTGAACATAATACACCATTAATTACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGCAAAGTGGAATCTTCGCTTGTTGCACCTGCTGCTCCTATAGCTGCAAATGTATTTAAATATTTTACTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAGCTACTCAAAAAGGCTATTGTGCCTATCTGTGCATTTGCTAGTGATTCAAGCATTACCCCTGATAAACTATACCAGCCCATAGATACACCAATAGATAAACTATATACCAAATTCATATCAAAAATATAACTGCAAATAAATCCGCCAAAAACAGACCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATCTTCTCAATTATTGAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1045-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAH01000181.1 Megamonas funiformis strain AF12-42 AF12-42.Scaf181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 1044 28 100.0 32 ............................ TCAATGCCTGCCTCCGTGTTGGAGAGAGGTTT 984 28 100.0 32 ............................ ATTTGGACATGGCGATTGCCCTATCAATGTTT 924 28 100.0 32 ............................ CCCAACGGACGCAGGAAGATAAGGCGCTCGAC 864 28 100.0 32 ............................ TATAAAAATCAGAAGAAACGGAAAAGTAATAA 804 28 100.0 32 ............................ AAGGTAAACGTGCTGCGTCACAGTAGTGCTGT 744 28 100.0 32 ............................ TATATCACTATGTATGCTCAAGTGTGGATTGT 684 28 100.0 32 ............................ AGCAGCTCGTGTATTGCTTATTGGTAACAGTG 624 28 100.0 32 ............................ GGTAAAGCTGTTATTTTTTTCCATGATAAAAA 564 28 100.0 32 ............................ TGTAAACAAGAACATCTTTTCTCAAGAACATT 504 28 100.0 32 ............................ AGTCACTATGTATGCTCAAGTGTAGAATGTCA 444 28 100.0 32 ............................ TACGAAGGCGGGTAACACAACTACCGCAGTCG 384 28 100.0 32 ............................ ACCAGGGAATTGGTGATAGAAAGGCGGGAAAA 324 28 100.0 37 ............................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC 259 28 100.0 32 ............................ CGAAGCTTTGGGACATTTACAGAATGGACTGT 199 28 100.0 33 ............................ TATCTTAAGGGAGTAAACGACGCCGAATAGGCG 138 28 100.0 32 ............................ GTCAAGCGGAACAATGACGACTGCGGTAGTCG 78 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 17 28 100.0 32 GATCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTATCTC # Right flank : ATGTAAACAAGAACGTTTTTTCTCAAGAATATTGATCACTGCCGCATAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //