Array 1 3658-1552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUV010000114.1 Erwinia amylovora strain EaA-11 Ea_A-11_contig_114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3657 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 3596 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 3535 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 3474 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 3413 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 3352 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 3291 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 3229 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 3168 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 3107 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 3046 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 2985 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 2924 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 2863 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 2802 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 2741 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 2680 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 2619 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 2558 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 2496 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 2435 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 2374 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 2313 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 2252 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 2191 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 2129 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 2068 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 2007 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 1946 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 1885 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 1824 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 1763 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 1702 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 1641 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 1580 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATACTGGGCAAGCTTATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTGNNCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16347-14550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUV010000114.1 Erwinia amylovora strain EaA-11 Ea_A-11_contig_114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16346 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 16285 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 16224 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 16163 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 16102 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 16041 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 15980 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 15919 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 15858 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 15797 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 15736 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 15675 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 15614 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 15553 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 15492 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 15431 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 15370 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 15309 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 15248 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 15187 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 15126 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 15065 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 15004 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 14943 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 14882 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 14821 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 14760 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 14699 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 14638 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 14577 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.1 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 657-328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUV010000125.1 Erwinia amylovora strain EaA-11 Ea_A-11_contig_125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 656 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 596 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 536 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 476 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 416 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 355 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //