Array 1 45121-47848 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSLH01000004.1 Ligilactobacillus salivarius strain AM25-8 AM25-8.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 45121 36 100.0 30 .................................... ATGACGACTTATCTCAATGGTCTCAAACGG 45187 36 100.0 30 .................................... TTCTTCACGGTCATATCTGGTTGAACCAGT 45253 36 100.0 30 .................................... GACTTGTCGTGTTCTGCGACGACGTCTTCT 45319 36 100.0 30 .................................... ATTGGAACGCTTTTGTCGCTTTGACTGGTC 45385 36 100.0 30 .................................... AAAAGATTTAGTATCTGGTGCAGTAGTTGG 45451 36 100.0 30 .................................... TGTAACATTAGATAATTCATCAAAGCTATC 45517 36 100.0 30 .................................... TTAGATACTGATCAACTAGAAAAAAAGCGC 45583 36 100.0 30 .................................... ATATAATCGTTCTATCTGTCTATCTGAATA 45649 36 100.0 30 .................................... CATATTTGGGGTTAGTAAGCAAACACCGCC 45715 36 100.0 30 .................................... GATACTGAGTAAATTTCTAGGCTTGTTAGT 45781 36 100.0 30 .................................... GGTAGGAATGGGAATGAATAGAGATCATGT 45847 36 100.0 30 .................................... GGTATGACGGTGTTGATTATTGGGAACTTA 45913 36 100.0 30 .................................... CGGCTGAACGACGGGAATTGATTAAAGAAA 45979 36 100.0 30 .................................... TTTTAATATCTTCAATAAGTTCATCTCTTC 46045 36 100.0 30 .................................... TTCTAGCTTGTAAACGTCATTTGAAAGATT 46111 36 100.0 30 .................................... ATTTCTTAAGCAACATTGCAAGTCTAGGCA 46177 36 100.0 30 .................................... ACTTGAACTTGAGTTGTTCTCTGAAACTGA 46243 36 100.0 30 .................................... ATAATCCAGTTGCAGAAAAATTCCAAGATT 46309 36 100.0 30 .................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNTT 46375 36 100.0 30 .................................... TTTATCAGCAATCAGACAAGCACAAGATCT 46441 36 100.0 30 .................................... CGACGGCTATCAACTGTTACAACTTCACCG 46507 36 100.0 30 .................................... CGGCACTGTCGGCATCATCATCCGTTTGCA 46573 36 100.0 30 .................................... AGATAAGTCTGGACGTGCATGGTCCCTTGA 46639 36 100.0 30 .................................... TGAAAGATTAAAAGCAGAAGGTAGAGAGTT 46705 36 100.0 30 .................................... AGATAAGTCTGGACGTGCATGGTCCCTTGA 46771 36 100.0 30 .................................... TGAAAGATTAAAAGCAGAAGGTAGAGAGTT 46837 36 100.0 30 .................................... AGATAAGTCTGGACGTGCATGGTCCCTTGA 46903 36 100.0 30 .................................... TGAAAGATTAAAAGCAGAAGGTAGAGAGTT 46969 36 100.0 30 .................................... CCAGTGGTTGGCGGACGAAACCGTCCAACC 47035 36 100.0 30 .................................... GTAACACTGCGGATTTGGTCTTCGTGATCG 47101 36 100.0 30 .................................... AGATGTCGGTGGAATATAGCCCATGAACTG 47167 36 100.0 30 .................................... TATCACAGAAAGTTCTCCAGCAACATTATT 47233 36 100.0 30 .................................... CGATAAGATTGCAGAAATTACTAACTTGAT 47299 36 100.0 30 .................................... GAACCATTTACTTCATACGTGATGTTGGCG 47365 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 47431 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 47497 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 47563 36 86.1 29 ..........T.........T...A......G.T.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC C [47596] 47629 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 47747 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 47813 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 41 36 98.6 31 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //