Array 1 57858-57268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDI010000014.1 Marinitoga litoralis strain DSM 21709 Ga0454015_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================== ================== 57857 30 100.0 37 .............................. CAAGGAATGCTGCTGTATTAGGGGAAACTGGCTCTAT 57790 30 100.0 38 .............................. ATTCTTCAATTTCTTTTTCAATAATTCTTTTTATTTCT 57722 30 100.0 52 .............................. TTTTGTAAAATCAACTATGTATATTATTTTTCCTGCAATGTCTATTCCACTG 57640 30 100.0 39 .............................. CCTCCTTTAAAAATATAGTTACTTTAAATCCATTTTGAA 57571 30 100.0 41 .............................. CAGCAAACAATCCGCTTTGATGTGCTATGTGTAAAAATCCG 57500 30 100.0 39 .............................. CAATATACGCTTTTGTGAACTTTACCAGCTTTGGCTAAG 57431 30 100.0 35 .............................. TTAAAGACACTAGTTACTATACCTTAGCTAATAAA 57366 30 100.0 39 .............................. AAATGCATCCCGGTAATGCTCATAGTCTTCAATTGCTAA 57297 30 90.0 0 ........................AA...A | ========== ====== ====== ====== ============================== ==================================================== ================== 9 30 98.9 40 GTTTTTAACCTACCTATGAGGTATGGAAAC # Left flank : CTTAATATTGTTTAAAACACGGATGTTTTCAACATTTTATTTTTTTGGCCCATTTTTCAATTATAATTTGGCTTACTTTTGAGTTGCAAAATACAATAAACTCCGCTTTTCACTTTATATATACC # Right flank : AATCAAGGCCTTTAAGACCTTGATTTTTTTTGTTTAATTATTTGTTATTTTCTGAACATTTTATTGATAAAGCTTTTTTTATCTGTTTCAAATTTTTCGTCAATATGATTAATTATATTTTTTTCTAAATCTTTTAATGCCTTTGCTATCTTATTGTCTAATGCAGCATCAATTCTTGAAACACTTAATTTTAAATATGTGATTTCATCATTTACTTTTTTTATATCCCTATCTATTCTTCTAGCAATACTTTCAATTTTATCTTTATAATCTTCATATAGTGAATATGTCTCATCTAAAGTTTCTTCAATTTTATCTTTTAAATCCTTCTCTATTTTTTTAAATAATTCTTCAAAAAATAAATTAAATTGCTCACCTACAATTTTATTTATATCAATTTCTGATTCATATCTATTTTTTATTTCATTTAAATTTTCTAAAATACGTTCTATTTCATTTTTTTTATTTTCTAGTTCATTTAATAATTGCGATAATGATTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAACCTACCTATGAGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1905-6222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDI010000036.1 Marinitoga litoralis strain DSM 21709 Ga0454015_36, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1905 30 100.0 41 .............................. CATATTTAATATGTCTTTTGAGGAGTTGGCAAAAGAAGCAA 1976 30 100.0 39 .............................. GTAGATTTGGTGTTGAAAGGTATTAAAGGCTTAGATAGA 2045 30 100.0 44 .............................. TATATCATATAAGCGAATCAATAAAAAATGGGGACTTAGATCCC 2119 30 100.0 45 .............................. TAAGGCAAATGTGATTTTTGCAATAGACGAAAAAGTTAAAAATGG 2194 30 100.0 39 .............................. GAATTAAAGTTAGATATAGAAAATAAAATAATGGATTTA 2263 30 100.0 40 .............................. TGTTTTAGTGAGTTCGTAGAAATTAACGAATGTATAAAGC 2333 30 100.0 41 .............................. ATGAATTCCTAAGTAACATAAAGGACTCACTAAAAAGTTGT 2404 30 100.0 39 .............................. TAAAAATTAAAGGTTGACATTTTGAAATTTTTATGATAT 2473 30 100.0 39 .............................. TAGATTCGGAACGGTACAAGCCAAAATAGAAATTGATGT 2542 30 100.0 42 .............................. TAGAAGAACAAGTAGGTAAATTAGGATTTGAACACGGGAGTA 2614 30 100.0 38 .............................. CTTAAAAAGAGAAGTAAAAAATGGAATAGTAATAAATA 2682 30 100.0 36 .............................. TTTTTACCGTGTAAAACACTAAAAATCGGTATAAAT 2748 30 100.0 36 .............................. AGGCAAAAGTACAACTGGTATGCCGTTGTTTCCAGC 2814 30 100.0 40 .............................. TGGGTATAACCTAGACGATTTATTGTAACTAACTTTTAAA 2884 30 100.0 38 .............................. TAACGTCTGGTGGTATATAAATATGACGCGTAATATGT 2952 30 100.0 38 .............................. TATCGAAAATTATATCGATGAATTATTGTATAACTACA 3020 30 100.0 38 .............................. TATTTTTTTTTATTTTTTTTATTTTTTTTTAACATAGA 3088 30 100.0 39 .............................. AGAATATGTAGACGACGTAACGGATTGGTACTGGAGAAA 3157 30 100.0 39 .............................. TTTTATATATTTTTGCTAAAATCAAATGAATTGTTTTTT 3226 30 100.0 39 .............................. AGTGATAGACCTTGAAGAAACAATTGAAGAAGAAGAAGA 3295 30 100.0 39 .............................. AAAAACGAAACAGAAAAAAGAATTTTTGAAAGAATTTTT 3364 30 100.0 40 .............................. AGAATTAATGGCTGTAATAGAAGCATTAAAATGGTGTGTT 3434 30 100.0 41 .............................. TTAAAAGAATGCAAAGATAGATACCAGTATGGAATGCATTA 3505 30 100.0 39 .............................. AGTTATAACACTGTTTCAAATGGTAAAGCAGATACAATA 3574 30 100.0 37 .............................. ATGAAAATGTGCGAAAGGGGTGAGTGAATGGAAAATA 3641 30 100.0 40 .............................. TAAACCAAGCCACAATTTGGAGAATTGAAAACAGCATTAT 3711 30 100.0 35 .............................. TTAGACTTTTTTATCGAAGCACTTTTCGCCGATTA 3776 30 100.0 38 .............................. TATTTGTAGTGATTCATTGCCTAAAAGGATCAACTTCG 3844 30 100.0 37 .............................. ACTAATAAATTTTTATGTGCAAAAAAACATAGATATA 3911 30 100.0 38 .............................. ATTTTTAGTGACTCTCTTCCAAAAAAAGTAGATTTTGT 3979 30 100.0 38 .............................. TAAAGAAAACGGGATTATAGTTATTGATCCTCAAGAAA 4047 30 100.0 38 .............................. CTAAAGGAAAATTCTGGACAAGGAGGGAAGGAAATGCC 4115 30 100.0 40 .............................. TTTTTATACCCAAAGGAAAGTTTTGGGCAATAAAAGAAGG 4185 30 100.0 37 .............................. CATTAAGGCAATGCTTTAATGAATTCGAGGAAATTTT 4252 30 100.0 39 .............................. GAAGAATTGGATGAATTTATTAACGAAAGATATGAAGTA 4321 30 100.0 38 .............................. AAGAAACCATAAGCTTAAAAGATAGGCCGGAAAATATT 4389 30 100.0 38 .............................. AAGAAACCATAAGCTTAAAAGATAGGCCGGAAAATATT 4457 30 100.0 36 .............................. TTAAAAGATAAGCCAGACAATATCATAAAAAAAATA 4523 30 100.0 35 .............................. ACTCTTTGGAAATAAGAAAAGCCAGAGATTTTCTA 4588 30 100.0 41 .............................. ATGAATTTATTAGCGAAAGAGTATCTAAACAGTTAGAATCA 4659 30 100.0 35 .............................. AAAAAGGCCCATTTATATTGGGTCGAAACGTTACA 4724 30 100.0 36 .............................. AAAATTAAAAGTAAAGTTTAGATTATCTAATTCAGA 4790 30 100.0 36 .............................. GACTTCTGAAGAAAAACTCAAAGAGAAATTTATAAG 4856 30 100.0 36 .............................. AAAATTAGATGAGTTCGAAAATAATGTAAAAAACTC 4922 30 100.0 39 .............................. CTTGAACAAGAATTATTTGATAACTTACCAAAACCTTAT 4991 30 100.0 38 .............................. AATAATAATTGATGTAAAAGATGTAAAAAACTCAGAAA 5059 30 100.0 37 .............................. TAGATGAATTCGAAAGTAGTGTAATAAATTCGTTAAA 5126 30 100.0 40 .............................. GAAAATGAATATCAAATCAGACCATTAACCGAAGAAGAAA 5196 30 100.0 37 .............................. GCCAAAATAACAATCGATATAACAAACAATAACATGC 5263 30 100.0 37 .............................. TATGAAAGAAGAAACGAAATTTAGTTTATTCAATGGT 5330 30 100.0 37 .............................. CATTATACGATAAATATATGTCCCAGGCAATTTCATA 5397 30 100.0 36 .............................. TTTTTTTTAAAAAAAAATTATCGGAGGTGTTTTTTA 5463 30 100.0 36 .............................. CAAAAAAAAATCTAGCGAGTGTTTATACACTCGCTT 5529 30 100.0 36 .............................. CAAGTTTCTCGATTTTTTCGAGAAACTCAAAGAAAA 5595 30 100.0 37 .............................. AGATTTAGAAAAAAGAATAACCCAGCCGGTGTGGACT 5662 30 100.0 37 .............................. TTAAAAAAAAATTCTTTTTACGTTTTTGTAGTAACTT 5729 30 100.0 36 .............................. ACATTATAAAAAACATAGAAGAAATTTCGAAGAAAT 5795 30 100.0 36 .............................. CTATGAAGGTATGAAGGAAGAAACAAAATTTAATAA 5861 30 100.0 35 .............................. GAAGTTATAAACTTAAAGGATAAACCAAGTAATAT 5926 30 100.0 37 .............................. TCGGCTATCAAATGGCCGAGTTGATGGCGCAAAAAAA 5993 30 100.0 36 .............................. TAAATAAAGCCCGCTTTTGCGGGTTTTTAAAAAATT 6059 30 100.0 37 .............................. AAAGAATGGAAGCAAGAAAAGCTTCAACAAAACCTGG 6126 30 100.0 37 .............................. CACCCCCACTCGACAAAGCACTAAAAATAGCAAAAGC 6193 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 64 30 100.0 38 GTTTCCATACCTCATAGGTAGATTAAAAAC # Left flank : AAACCTGTTCTTACCATATATCTAAGATGTTTTTTTAAATAGTTATAAGATCCTCTATATTGTGGTGGAATATTAGAAATTTCTTTTTTTGATTCTTGATATATAAGCATTCCTCCAAAAACTATTAAGCCAATTGAAGCAGAAATTAATACTGTATCACTTGTAATAAAATCAAAAAAATCTTTCAATATATTTTTTTTCACATCCATTCCTCCTTTCAATTAAAATAAATATTTTTATTCAAATTAATAACAGACATTTAATTATATATCAATATAAAAAATGGGGATAACCCCCATTTAATAATTATTTATAACTATAAATATACTTTATTTATATATTATTGTATTTTGCAAATCAATTATGGATCTTTCTAATTTTACTTGACAAAAAAAGAGAAATATATTATTACTCCTGATTTTAAATAAAAATATAAAAAATTTTCAAATAACTTTGGAAAGAACCACTTTTAGTATACAAAATACATTTAAAGTAGAAGG # Right flank : CCCCGTAGAAATATCGATAAATATTATAACACCTTTTCTTTTCATTTCCTTTATCGTGCGGTTTACAAAATATTAAATCGCATAACAAAAGTATTTTTAGAGTTTTTTGTGCTTTCCGGATCCCCCTAATTTTTTATGATTTTTAATGAATTAACCTATTCGTTACATGGTTACAAAATTGTGATTAGCTAATAATAATATTTTTAGACGATTTTTATTTTCCCGGATCTCGACCTATAATTCGTATATCAAACTATATTTTATTTAATATTGTTATTTTTTAGTTTAATTTTTGATAATTATTTTTTAAATAAATAAAAAAGGCAGCTTTAAAGCTGCCCGTTAATTTTAAATCTTCCATATCCCATTGATGTTTTTGCTCCAAGACCATAAAATTCTATAAAATTCTTAAAATTATTTTGGATTTCTTCTGTTATTTTATTGTTATTTCTTTCTATTATAATATCTACTCTAAAATTACCTTTAAATACGCTTAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCATAGGTAGATTAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 102615-101369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDI010000001.1 Marinitoga litoralis strain DSM 21709 Ga0454015_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 102614 30 100.0 37 .............................. ATCCATTTAATGTCCAAGGATCCCCCTCCTTTAAAAG 102547 30 100.0 37 .............................. CTGCATTTACAAACCTTTCATAGTCCTTTATAATTTG 102480 30 100.0 37 .............................. AATTCAACGCTCTATTTATTTGTGTTTCTCTAATCAG 102413 30 100.0 37 .............................. TTTATCCACCAATTCTGCTATTTCTGGTCTTATACCG 102346 30 100.0 37 .............................. TTTTCTACTAAATAAGTAACGGAAAACCCTTTATGAG 102279 30 100.0 40 .............................. CTTTTTTAATTCTCTTATATCATTCGAGATCTTTATAGTG 102209 30 100.0 42 .............................. CCGATTAAACTCATTTTTTCACCCTCCTTTTTTTTTAAAAAA 102137 30 100.0 39 .............................. TATAATGTATTATCTTTTTGTATTGATAGTTTCAAGTGA 102068 30 100.0 43 .............................. AAATCTGATAAAATCTTCTTTGGTTTCAAATTCTTTATCTGTT 101995 30 100.0 37 .............................. TAAATTTAGATCCATGTTTTTTTAAAAAAAATAAAAA 101928 30 100.0 40 .............................. TGATTGTGGCTATTTCTACTACAACTACTTCGTTACTTTC 101858 30 100.0 42 .............................. TTTTTCACTCCCTTTCACATATAGTTGTCTCTGTATCTTCCA 101786 30 100.0 38 .............................. AGAATATTTACAGTTTTTCCTTCGATTTCATTTTTCAA 101718 30 100.0 37 .............................. TAAATTTAGATCCATGTTTTTTTAAAAAAAATAAAAA 101651 30 100.0 39 .............................. TTGTACATTAACCCCGAAATATTCTCTGACTACTATTTC 101582 30 100.0 40 .............................. ATTAATTCATCTAATTTATAAATAACATTTGCCTTATTAA 101512 30 100.0 46 .............................. TTTTCGTAAAATATCCTTAGTATTTCTACAACTTGTTGTTCATCTA 101436 30 100.0 8 .............................. TAAATATT Deletion [101399] 101398 30 70.0 0 .............T.....AT...AATTTT | ========== ====== ====== ====== ============================== ============================================== ================== 19 30 98.4 38 GTTTTTAATCTACCTATGAGGTATGGAAAC # Left flank : ATAAAAGGATTTTCTTTAAAAAACTATGAAGGAAACTTTTGGAAAGGAAAATTAGAGTTTGAAATTTCTGAATTATGGCATAAACCATTTCTTTTATATTTAGAAACATTTGGTATCGGATATAAAATTGATGAAGGGTATGGAGAATTAGGCCGATTATAATCGGCCTTTTATAATTTAAATATTTTTATTTTTTAAAAAATTATCAAAAATTAAACTAAAAAATAACAATGTAAAATAAAATATAGTTTGATATACGAATTATAGGTCGAGATCCGGGAAAATAAAAATCGTCTAAAAATCTTATTATTAGTGAATCACAATTTTGTAACTATGTAACGACCAGGTTAATTCATTAAAAATCATAAAAAATTAGGGGGATCCGGAAAGCACAAAAAATTCTAAAAATACTTTTGTTATGAGATTTAATATTTTGTAAACTGCACGATAAAGGAAATGAAAAGAAAAGGTGTTATAATATTCATCGATATTTCTACGGG # Right flank : TATAATAAATATAAAAAATTTTATAATTATAAGGAGGTATTGTATGAGCGGAAAGTTATTTTCTCTAATTGCTATTTTGGTAGTAGCTTTTGTAGTTCTTATTATCGCATTTCCTGATTCAACAAAAGGATTTTTAGCAAAAGCAAACTCACAAAGGGATGAACTTGAAAAAAGTAACACTGCAGAAAATTCAATTGAATTAATAAAAAAACAAATTGAAGATATGGAAAATGATTATTATAGCAAGCTAGATAAAATTGCAGAAATAAAAGCAAAAAAAATGAATTTAGAAAAAGAAATTGAAAACATTAAATCACAAATTAAAGATTATGAAGAAAAAATCAATAAATTAGCAGAAATCTATAAATCAGCAAAAATTGAGGGTAAGGATGAAATTGAAATTGGGAATAAAAAATATAAATTAAGTGAACTTAGAGAAAAAATTGAATTATTGGTAAGTGAAATTGATGAAAATTTAAATAATCAACTAGAATTAAAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAATCTACCTATGAGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 111961-114322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDI010000001.1 Marinitoga litoralis strain DSM 21709 Ga0454015_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 111961 30 100.0 37 .............................. CTTCATTTCATCGTTTTTTAAATCAATTACATCAATT 112028 30 100.0 36 .............................. TATTTCTTTAACTCTGTAACTTTTTGCGAATCGAAC 112094 30 100.0 36 .............................. GCCTGAAATTTTGCAGAGAAAACTGGAAATAATTTT 112160 30 100.0 38 .............................. TAATACTTTAATCATTTTTGACCCTCCTTTTCTTTTTT 112228 30 100.0 39 .............................. AGAAATCGGGCTTTGGATTATTGCCTCCTACAATTACAC 112297 30 100.0 38 .............................. AGCTTTCTTCTCAATACCGTACTCTTTGAGCTTCTCTT 112365 30 100.0 37 .............................. AAGCGTTCACATCTAACAACAAACAATACTCTAAACC 112432 30 100.0 37 .............................. AATACTCCCGTCATCAAGGTCAAGCCATGCTAGTTAG 112499 30 100.0 39 .............................. TCTAAAACTTCAGTGATTACTTCATCATCATTGGTACCG 112568 30 100.0 37 .............................. ATTGCTATTTCATTTTTGTTTTTAAAAATGTATACTG 112635 30 100.0 41 .............................. CAAACAGCGTTTAACATCCAAGTGACTCGAATTAAATATGG 112706 30 100.0 39 .............................. ACGTTGGAAGCGCTGCTAAAGTCTGGCACATCGTTGGGG 112775 30 100.0 38 .............................. TTTTATTACAGCTTTTATCGTTCCTAATCCAATTTTGA 112843 30 100.0 40 .............................. CATCATTGAATAAGAAAACTAATTTAGGTGATACATAAGG 112913 30 100.0 38 .............................. ATACTTTCCTTCTTCGCAATCATATTCATCTTCTACGA 112981 30 100.0 41 .............................. CTTCTACAACTCCTCTTACTTTTCTTTCCATCTTCTTCCTC 113052 30 100.0 42 .............................. CCAGTATTCGTCGATATAAATAAGAGCATCATATATCGACTC 113124 30 100.0 42 .............................. TTTTTCACCGTTAAAATAATCTCTAAAAACCTTTTTAATATT 113196 30 100.0 38 .............................. TCTTTTACTTTTGTTCTTTTTATATTTACTACATTTAC 113264 30 100.0 39 .............................. TCCCATTCCCATTTTTTACTATGGCTATATTTTTTCAAT 113333 30 100.0 40 .............................. TAATCAGTTTCGTCTCTTAAAAAGTAGAACTTTAAATTTT 113403 30 100.0 36 .............................. TTTTGATACTTATTTTCGTATAAAATTGTCAATACA 113469 30 100.0 38 .............................. AAGTTGTCTAGCTGTAAAAATAGGAACTTCCACATAAA 113537 30 100.0 38 .............................. GAAAAATTCTGACATGTTATGTGAGTTTTCTCTATATA 113605 30 100.0 39 .............................. TTCAGCGACAAGTGTATATTCATTAAAATTTTTGCTTAA 113674 30 100.0 41 .............................. CTTTTTATTTTTGTACAATATTTCTAACACCTTAATTACAT 113745 30 100.0 36 .............................. CATTTTAGATAATTCTACCGGTATTCTTTCAATTTT 113811 30 100.0 40 .............................. ATGTAATTTTTTAAATTTTTGTAAATCCAATGTTTTTCCT 113881 30 100.0 39 .............................. CCCCTTCGGATGGAGTTTCTCACTCCACCCGAAATAATA 113950 30 100.0 40 .............................. TAATGTGTTACTTTTTCAAAATTTTCAGATATTTTATAAA 114020 30 100.0 38 .............................. ATAGTTTTTATAAAACGTAACCTTAATTTTCTAAATTC 114088 30 100.0 38 .............................. TCAAAAACTCATCGAAATCTCTTGAAGTTTTTTCTATA 114156 30 100.0 39 .............................. TCCGCCAGTGAGCAGGCGGACCCTGCATTTATATTCCGC 114225 30 100.0 38 .............................. TTTTAAGAAAACTAATAAACTTTTCATTCTTAACTGGA 114293 29 80.0 0 .......TC..........T....-A...T | T [114311] ========== ====== ====== ====== ============================== ========================================== ================== 35 30 99.4 39 GTTTTTAATCTACCTATGAGGTATGGAAAC # Left flank : AAGTTGTTTGAAGGTGGATAAATGTAAAATGTTCCCTCCAAAGTAGTCAGTGTAATTAATAAAAAAACACTGAACTATAAGGAGGGATTTTTTAATGGATAAAAGGAGGAAATTTAGAAAAGAAATAAAAATACCAGTATGTAAAGATTACGACTAATTCATATTTTTTAGATAATATATAAAGAACAAACTATTTATAAAAAATTATCAAAAATTAAACTAAAAAATAACAATGTAAAATAAAATATAGTTTGATATACGAATTATAGGTCGAGATCCGGAAAAATAAAAATCGTCTAAAAATCTTATTATTAGTGAATCACAATTTTGTAACTATGTAACGACCAGGTTAATTCATTAAAAATCATAAAAAATTAGGGGGATCCGGAAAGCACAAAAAATTCTAAAAATACTTTTGTTATGCGATTTAATATTTTGTAAACCGCACGATAAAGGAAATGAAAAGAAAAGGTGTTATAATATTCATCGATATTTCTACG # Right flank : TAACTATCCCTGGATCATAATTGATCCAGGGAATTTTTTTAGTTTGTAATTAATTGGAATTTTTGAAATAAATTTAACTTTTTAGTTTTATAAAATGATAATATATTTTTAAATATCCATTTTAATTTAGAAGTAAAATCATTATTTTGTATATAAAATGATTAAATAGAAAGAAAAAAATTTAAATGTCTTTTATTAATTTGGATTAAAATAATAATTTGAATGGAGGGGAAAGTGTGTATAGTGCAAGCATATTTTTAAATGATTTGTGTAATTATAAGTGTATATATTGTTATAGGCATATTGGAAAAGGAGAAATAGAAAAAAATAAAGTTTTTGATATTTTAGCTCATTTAAAAAGAATGAATTTTTCTAAAATTTCTTTTGCAGGTGGAGAACCAACATTAGTAAGTTGGAATGTGTTTGATGTAATTGAGTATGCAAAAAAATTAGGTTTTACAACTGAATTAATAACTAATGGAACAAATAAAATAAATTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAATCTACCTATGAGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 10199-14043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDI010000050.1 Marinitoga litoralis strain DSM 21709 Ga0454015_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 10199 30 100.0 35 .............................. GCAGCTTTTGACTTCAAAAAAGCTGCTTTTAAATT 10264 30 100.0 37 .............................. GTATTGCATTAATTACCGCTGCTTCTTCCTTTGTTAC 10331 30 100.0 37 .............................. TTATAATCGCTGCTTCTTTATCTGTTACTTTGAAATC 10398 30 100.0 37 .............................. TTCTTCTTTTTTGAACCTAAAAAAACCATTAAATAGT 10465 30 100.0 37 .............................. TAATTCTTTTGAAATTTCTTCTATTTTTTCTTTAATA 10532 30 100.0 37 .............................. ATTGGTTAACAGCATCCTTAGATAATTCCCATATATA 10599 30 100.0 36 .............................. CCGTTAAGACTTCCTCTTGTTTTTTAAATTTGCAAG 10665 30 100.0 38 .............................. TCATCTATTTTCTGCATTTCATTAGCAATTGCCTGCAT 10733 30 100.0 35 .............................. TTTTTTCTATAATATTGTTTGGGTTATCCTTTAGG 10798 30 100.0 34 .............................. TGTTATATTTATAATATAAATCCCTATTTTCTTG 10862 30 100.0 39 .............................. TGTATAAAAAAATGGCCTTAATTACTTGACAAAAAATAT 10931 30 100.0 36 .............................. TTCACCTCCATATACCAACTTGATTTCTCTTACAAT 10997 30 100.0 38 .............................. TTCAAGCGCGCCGATTCCCTTCAACGCGTTTTTTAGAA 11065 30 100.0 35 .............................. TCAAATTCATTAAGTTCCCTCGAAACTTTTTCTAT 11130 30 100.0 36 .............................. TCATTTTTTTTCAAAAAAAAATAGCGGGTATAATTA 11196 30 100.0 36 .............................. AAAGTATCTGAAATATAATACTTAGAAAATACATGA 11262 30 100.0 37 .............................. AATGCTGTGTATAATGTCATTTTTAGGTCCAAAAACA 11329 30 100.0 37 .............................. AATACTCTAAATGCATTTTTTCCGTCAAGATTCTCTT 11396 30 100.0 37 .............................. TATACTCATACTATACACCTCCGATATTTTTTTTTCA 11463 30 100.0 36 .............................. TAATTTTAATTAATATTCATCTTCATCTTCTTCAAT 11529 30 100.0 36 .............................. GAATTCGAAAATTTCTTCGAATTCGTTAAAGCATTG 11595 30 100.0 37 .............................. ATAGCCGAGAGTTATTTTTCCAGAAGAAGTAAAAACA 11662 30 100.0 35 .............................. TCCATACATTATCTTTAAATTCTTTACCATATACT 11727 30 100.0 37 .............................. CCCTTCCCGTCTCGTAATGACTTAGTGCTTTTCTTGA 11794 30 100.0 38 .............................. CCCTCTAATATTTCAGCATGTAATAAAACTGGTATTAC 11862 30 100.0 35 .............................. TTTTAATTCTACTTTACTCATAAAAAACACCTCCA 11927 30 100.0 37 .............................. TTTGACTCTCGTGAGTATTTAAAAATTTACTTAAATC 11994 30 100.0 36 .............................. TCTGTTTTATCTCTTAAACTTATAACTTCTTCTTTT 12060 30 100.0 36 .............................. GTTTTTTATAATATTTTCTTGTTTATCTCTTAAACT 12126 30 100.0 35 .............................. TTCATTTCATCGTTTTTTACATCAATTATTATTTT 12191 30 100.0 36 .............................. ACGTTTCGACCCAATACAAGTGGGCCTTTTTAAATT 12257 30 100.0 37 .............................. TTTCTGAGTTTTTTACATCAATTATTATTTTGGCAGT 12324 30 100.0 36 .............................. AATAGCGGGTAAAATACCCGCTAAATATTTAATTTT 12390 30 100.0 37 .............................. CCCAGAGAGTGCCATAAGGTTTTACCGTTCTTGTATA 12457 30 100.0 37 .............................. TAGTAACTTGCTACGAAACTACGAAAAGAATTTTCCA 12524 30 100.0 36 .............................. GATTTTCTGATTTTTAGTTCTAATCCGCCTTTAAAA 12590 30 100.0 36 .............................. AAAAACGAAGTTATATTTTTGTTTTGGGCTGATTTC 12656 30 100.0 37 .............................. AGAAATAAATATATTATTAATATAATCTAAATATTTT 12723 30 100.0 36 .............................. TTCATCATATACTAAGTGTTTATCAAACTCTAATCT 12789 30 100.0 37 .............................. CCAACTCAACTTCTTTGTTTATTTCCGCCGTATTTAG 12856 30 100.0 37 .............................. GTTCATGCACCCTGGAACCTATGGACGCTGCAGCATT 12923 30 100.0 39 .............................. ATACGATAGCGAAATCGTCTGGAAGTTTCTTTAATATAA 12992 30 100.0 39 .............................. GCCCGCAAAAGCGGGCTTTATATTATTACTCTTCTTCGA 13061 30 100.0 36 .............................. CTCCTTTTTCCCCTTTCACAAAATCTACTTTTTTTG 13127 30 100.0 36 .............................. TATAATAAAATTTTTTCAAAAAAGCAATCGAGATTT 13193 30 100.0 37 .............................. AAATTCATAAAACATTCATCAACACCATCATACCAGA 13260 30 100.0 39 .............................. TCAATATATTTATATGTATTAGGTTCATTTTCAAACAGT 13329 30 100.0 37 .............................. TACTATTAGGTAATTGTCTTTTTTGCTGTATAAAGCA 13396 30 100.0 38 .............................. TCACCCTCAGGCGATTTATATATATCCTCATAGAATAT 13464 30 100.0 38 .............................. TGTCTCTTGTAAATATTCCATCTCTTTCTATTTCGTCA 13532 30 100.0 42 .............................. GGAACGGTTTTAATTCCCGTTCCCATTCCCATATTTCTTCTT 13604 30 100.0 36 .............................. TGTTCCAGATAACTCTTGATACTTTGTTACTATTTC 13670 30 100.0 38 .............................. TCAAGTACTCGTTAATCTCTTCAAATTCATTAAAGCAA 13738 30 100.0 35 .............................. TTAAAGACACTAGTTACTATACCTTAGCTAATAAA 13803 30 100.0 40 .............................. TCCATTCATTACCATATTTGTTTATTATAGCTCTCTTAAT 13873 30 100.0 40 .............................. ACATTTTCGTTGTGCTCTACGAACTCACTTTGTATAAACC 13943 30 100.0 41 .............................. ACATCGTCGTATACAATTCTATCTATAAGTTTCAATCCATC 14014 30 86.7 0 ..........................TGTA | ========== ====== ====== ====== ============================== ========================================== ================== 58 30 99.8 37 GTTTTTAACCTACCTATGAGGTATGGAAAC # Left flank : ATATATGAGAGATAAAACAGGTTATATTATTATATATGAAAACAACAAACCAATTAATATGGAAAAATATAGAAATCAAAAACTAAGAGAATTTGAAAATGAAATAGTTTTTTCATCAAAAAAATATGATTATGTATATACAAATAATAGATTATATGTTAAAAAAAGAGGCGATGATTAATCGCCTCTTTTTTAATAAATATTTTTCTATAATTAAACAAAAACATAACAATGTTAAATAAAATATAGTTTGATATACGAATTATAGGTCGAGATCTGGGAAAATAAAAATCGTCTAAAAATATTATTATTAGTGAATCACAATTTTGTAACTATGTAACGAATAGGTTAATTCATTAAAAATCATAAAAAATTAGGGGGATCCGGAAAGCACAAAAAACTCTAAAAATACTTTTGTTATGCGATTTAATATTTTGTAAACCGCACGATAAAGGAAATGAAAAGAAAAGGTGTTATAATATTTATCGATATTTCTACGG # Right flank : AATGGTAAAATAAAAACGGTTCTTTCCAAAGATAATTGACAATAAAAGGTAAAAAATGCTATAATGAAAGCAAAAACGAAAGGGAAGAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAACCTACCTATGAGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //