Array 1 186724-184863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAF010000004.1 Salmonella enterica subsp. enterica serovar Derby strain GZ19MPS2 YZU1946_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186723 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 186662 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 186600 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 186539 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 186478 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 186417 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 186356 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 186295 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 186234 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 186173 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 186112 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 186051 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 185990 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 185929 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 185868 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 185807 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 185746 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 185685 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 185624 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 185563 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 185502 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 185441 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 185380 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 185319 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 185258 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 185197 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 185136 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 185075 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 185014 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 184953 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 184892 29 93.1 0 A...........T................ | A [184865] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204124-203364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAF010000004.1 Salmonella enterica subsp. enterica serovar Derby strain GZ19MPS2 YZU1946_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204123 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 204062 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 204001 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 203940 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 203879 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 203818 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 203757 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 203696 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 203635 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 203574 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 203513 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 203452 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 203391 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //