Array 1 96945-98070 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGB01000011.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N45397 N45397_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96945 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 97006 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 97067 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 97128 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 97189 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 97250 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 97311 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 97372 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 97433 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 97494 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 97555 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 97616 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 97677 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 97738 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 97799 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 97860 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97921 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97982 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 98043 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 942-2605 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGB01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N45397 N45397_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 942 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 1003 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 1064 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1125 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 1192 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 1253 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 1314 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 1375 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 1436 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1497 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1558 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1619 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1680 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1741 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1802 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 1863 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1924 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1985 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2046 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2149 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2210 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2271 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2332 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2393 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2454 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2515 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2576 29 96.6 0 A............................ | A [2602] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //