Array 1 785547-785879 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030118.1 Brasilonema sennae CENA114 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 785547 37 100.0 38 ..................................... TTGCATGATTTTGTTAGTGAAGATTTTCAAAAGCAGAT 785622 37 100.0 36 ..................................... TCTTTGAGAGAAAGAAAATGAGAATCGCCCATCCCT 785695 37 100.0 36 ..................................... CATCCGGACATTCCCTCTCCTCTGAATAAGAGGGAA 785768 37 100.0 38 ..................................... GACAAATGGTCTATTTTGGAACGTCAGCCCACCTTGAG 785843 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTTTCAACGCCCCTCGACGCTTGAGGCGGGTTGAAAG # Left flank : ACCTTGAAAATAAAATAAGAGTTAGTAATAGCGCCGCAGTTCATGCTTGTTACAAGCCTCTGTACTGTGTAAATGTGGGTTAGTTTGACTGTTGTCAAACAGTTTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGAAGCTGCTATCCCTTGTGGATAGGAATCAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGAGTCCACTTGCCGGGGAGATTTTCTTTCCGGCAAAGTGGCGAACCCGAAGGGTGGCTACTGAATCACCTCCGAGCAAGGAGGAACCCACCTTAATTATTTTTTTGGCGAATCGAAGCGGAGTCAATTTCCCTGGGGTTGCTGCCAAATCTTCAAATCTGTTTGTTGGCAAGGTTTCTAGGTTGTTATCTGTCACTTGATTTACTTTTTTAAGTTTCAAGTAGCGAGTGATTTTGGTTGGTTTGCCAAAAGTGCTTCTAGAAGTCTTGATAAATAAAGGGTTTTAGGCGCGGG # Right flank : GTCAAGAAATTTGGCACGAAATTTACCGTCGATTCTTTGTTTCAACGCCCCTCCTAGTAGTCCACCAAACTAATTTTGCAGGGTGATACCGATTATTGATAAGCTACTTCCACGGTTTAGAAGGTGGTATAATCGTGAAAAAATACATAGTGGACTTAAATGAGACTGAGATTTCCCAACTGCGATCGCTAACTAAAACAGGTAAGCATAAGGCACGAAGCATCACCCGCGCGAACATTCTTCTAATGGCGAGTGAGGGTTATTCAGATAACGTGATCGCTTCTACCCTACGAATTAATGTTTCAACTGTCGAGCGCACGCGTGAAAAATTTGTGCTTGGGGGATTGGAGTATACACTTCAAGACCGCCCTCATCCCCCGAAGCCTCGTAAACTTGACGGTAAGCAAGAAGCCTTTCTTGTTGCTACAGCCTGTTCGACTGCACCTGAAGGACGAACGCGTTGGACAATGCAGCTTTTAGCAGACCAACTCATAAGCCTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGCCCCTCGACGCTTGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.00,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 807648-810612 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030118.1 Brasilonema sennae CENA114 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 807648 37 100.0 34 ..................................... AAGGTTGGAAAGTTCTTTGATGAGATCAGCTAAA 807719 37 100.0 37 ..................................... AGGTGAATTATTCCCCAATGTTTTTGGTACATCAGGC 807793 37 100.0 36 ..................................... TTATTCATTGAAGTTTGTTTTTTTTCTGATATTTGT 807866 37 100.0 34 ..................................... AAATCTATCCCTACGCCTAACGCATCATTTAATT 807937 37 100.0 40 ..................................... TTTAAGTCAATATTTGGCGGCGGCTTCAGCATATTACCAT 808014 37 100.0 38 ..................................... GAATCGGACGAGTTTCCCAGTCTACGGTTAAGCTCTAC 808089 37 100.0 41 ..................................... TAGAAAAATTTTTGCACACAGTGAATTTGACAAAATTGGTG 808167 37 100.0 37 ..................................... GTCTTCATACTATACCTAACGCTCTAGACTCAAGTAT 808241 37 100.0 36 ..................................... TAAATACTTCTGTACCTGACTGGGGACAATACCATT 808314 37 100.0 40 ..................................... TTTAATACCTCATTATGAAGGGCTAATGACTGAAGAGTTG 808391 37 100.0 35 ..................................... ACCATAAACCCGTCCGGTGAAGTGTCTCTTAGTGG 808463 37 100.0 38 ..................................... AAATGACAAAACCCTGGGGAAGGAATAAACCCAACCCA 808538 37 100.0 40 ..................................... TCTACTACCCAGCCTGTTCTGGGAACTTTTAGCCCGGTCG 808615 37 100.0 35 ..................................... CCAAGAATCAAAGAGGGCTACAACCTCAATAAATA 808687 37 100.0 38 ..................................... ATAGGTAACACTGATGTACGCAGGGTAACCTTAAGTGG 808762 37 100.0 37 ..................................... TTACAAGATAAAAGACGCCAGCGTTTTAGAGACAATT 808836 37 100.0 33 ..................................... TTATCTTGAGTGTAGTCCCACCAACGACTAACA 808906 37 100.0 35 ..................................... ACGTCTGGTTGATGCACGATGGAATTGTACAGCTT 808978 37 100.0 35 ..................................... GTCTAAAGGTCTCTGAAGTACTTCCCAAGAAACTT 809050 37 100.0 37 ..................................... AAATAAACAACCGCACCTCCACCACCTCACCATTTAG 809124 37 100.0 34 ..................................... ATAACTCAAGCAGACCATGATCAACCAAGCGATC 809195 37 100.0 35 ..................................... AACATGGGCATATTGACGTCGCAAAGAACAGGAAG 809267 37 100.0 37 ..................................... CAGCAACCCAGCTAACAACTTAAATCGATCAGCCCTA 809341 37 100.0 35 ..................................... ATCAATGACAAATTCAAAAGACAGTACGAAGCAAG 809413 37 100.0 34 ..................................... TCAACAGAAGCAAGCTTACAAGACCGAACTCAAG 809484 37 100.0 33 ..................................... CTGATTCTGGAACTTTGGAACCCGAACTAAAAC 809554 37 100.0 34 ..................................... CTGCTACCGTGTAATTTTCCGGGCGATCGCTTCT 809625 37 100.0 34 ..................................... TTCATAGCGATCGCGCATCACCAGATATTCCAGC 809696 37 100.0 34 ..................................... CAATTAATAAAAATGACATTTTTTAGCCGAGAAC 809767 37 100.0 38 ..................................... TAGCCTATCCAAAATATCTCCCGAAAAAATAGAGCGTT 809842 37 100.0 31 ..................................... AAACACCAAGCGACACCTATCCTCGTCGGAA 809910 37 100.0 41 ..................................... TTGAACTGCGTCTACTTCCTTAAAGTTCCGAATATCTGTGA 809988 37 100.0 35 ..................................... CTGGGATGATTCTTTCCACACCTTCAGGAGCGCTG 810060 37 100.0 35 ..................................... TTTGGTCTTGTCGCTTCTTGGTATTTCTCGGACAA 810132 37 100.0 37 ..................................... CCGCGTAATCCAGCTACTGGCAATTCCTGTATTTTTA 810206 37 100.0 32 ..................................... TTAATAATGTAGACAAACAGATAGCAATCGGT 810275 37 100.0 40 ..................................... TTCTTTTGAAATTGTATAGAGCACACTTAAGTACTCTGGA 810352 37 100.0 35 ..................................... ACAACCCAGCGAGAAGTCTCAAAATCAGAGTCATC 810424 37 100.0 42 ..................................... AGCTACAGCATCAACCACAACTGGTGACGAACCTGAAATGTT 810503 37 100.0 36 ..................................... AAGACTATTCCCTTGCAAATCGCAGGTACGCTCAAG 810576 36 81.1 0 .......G..........-........AT...A.G.T | A [810601] ========== ====== ====== ====== ===================================== ========================================== ================== 41 37 99.5 36 GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : GTTGAGAGAAGATAGTGGCTTAGCCCTGATTTTGTTAGAAGATTTAGGCTTGCAGTTGCCAATGTTATTTAAACGTTCTGTGAATTTGGGCGAACAGATGTTAGTGAAAGTCCTTCATGCTGATCCACTTAGAGACGTGATTCAGTTTCAGGAAATTATTTATCAAGAAGCCCAACCTACGGCGAATTCTATGTAATTCCATGCTGTGTGGCTGCTGTTTTTGTAATGATGGGTGGTTAATAACCTTGCAATAAGATGATTTTTTTAGCCGATGGCGCGGATGGGTAGGTGTAGAAAAATGGGTTTAGAAAAAAATGCTTGGATGGCTTACAGGACAAGGATTTCGGAGAAAATTATTTTATAACCATCCGCGCTCTTTGCCCTGACTGGATTTCAGCGATTTACCTGTCAATTAATTTACTTTTTTGCATGTTATGATCAGAGCATCCGCGCTTTTGAACCTTGAAAACTTTATATGGTGCAGTTTTCTGAGTGCCGCA # Right flank : TTTTAATGACTTTTAATGCAAAAAAATATAATTCCAGAAAAAAGCTATAGCTAATTATTAGAGGAATAAATTCAAGATTAGCTAAAAATCTTCTCAAGAAAACTATATTATTTATTGATGTAATAAGAAAGTAAATCCTTACCACGTAAGGATTTGAAAGATTTTTGACACATCTCGTTTTAAACTTAGATTTATCTAAGTTGATAAAAAAATACTTTATGATTCAGGATAACCGCACTACGGTACGAAAGGTTTTAATTATTACTTTACTGCTGAATATATTCGTCATGGTGTTAAAAGCTGTCGTCGGAAACTTGACAGGTTCTCTGAGTTTGACAGCTGACGCTTTACATAGTGTGACTGATAGCGCCAACAATATATTAGGATTAATTGCCAGTCGGTTTTCTTCCCCAAGACCAGATCGGGATCACTCACATCTTGCACCTAACCGAACAAACCCGTAAAAGGCAAATAAGGAGTACAAAAATATAACAGAAGAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 850840-848557 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030118.1 Brasilonema sennae CENA114 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 850839 37 100.0 37 ..................................... AACATCACAAATTCATCTCCACTATTTAGCTGAGACA 850765 37 100.0 39 ..................................... AAACGCCAATTTAAAGCGCTCATCCCCACGGTATTATTT 850689 37 100.0 35 ..................................... TGTTTAGTAGTTAAAGAAGCGTACAGATCCTGGGT 850617 37 100.0 39 ..................................... TTGTCATATATCTCTACAATAATTTCCGTGAGAATGGGG 850541 37 100.0 34 ..................................... ATATTCAAGATATGCCACTTAAAGAACGGATTTA 850470 37 100.0 34 ..................................... GAAATTTCATCTGGGTAGGCTTTTGCAAAATCAA 850399 37 100.0 35 ..................................... AGTTGTAGTAAGTCTTGTAGGTCGGTGGGGGTACT 850327 37 100.0 35 ..................................... TACTTCCCTGAACTTGATATAGATACCGTACTTAG 850255 37 100.0 34 ..................................... TAAAGCTAAAATGACTCGCAGTCTGGCTGGAAAC 850184 37 100.0 34 ..................................... TGAGTTTGCCGAAATAACTCCTACGGGAACTTGG 850113 37 100.0 36 ..................................... AGGAGAGTTATTCTCCAATGGCAGCATGACCTGAAG 850040 37 100.0 34 ..................................... TGTTGCTTAACCCTTTTACCATTCTCGTTGTAAT 849969 37 100.0 35 ..................................... GTATCTGTAGACGCTGTGGAAATATCAGTAATGAC 849897 37 100.0 36 ..................................... AAAAAGTGTATCCGGCATTGCCAAGTCTCTCACAGG 849824 37 100.0 33 ..................................... TCTTCTATTAACTCTAGAACTCTTGCTTCATCC 849754 37 100.0 35 ..................................... AAGTTCCTCAGGGCTAAGTCGACGACCGGTGGACT 849682 37 100.0 37 ..................................... AGTTTGAAACAGTTGGCTCAACAGGTGGCTACTGCGC 849608 37 100.0 35 ..................................... GAAGTATTCGTTGTTGTTGAACACTTCTTCCATGT 849536 37 100.0 34 ..................................... TATTAGCATCAAAGGTAGTCATTGATACATCATT 849465 37 100.0 36 ..................................... TGTTATTGAAGGGTATTGCAACGTCATTGGTTCAAA 849392 37 100.0 37 ..................................... AGGAATGGAACGTTGCATGGGATAACAATACGATTTG 849318 37 100.0 34 ..................................... ATCAAAGCCTTGACCGTCTGACCTATCAGGAGTA 849247 37 100.0 37 ..................................... CTGATTTCGATAAAGCTGCTTTATCGAAATTTTCATC 849173 37 100.0 34 ..................................... ATAATGGTCGCACCACACTCATAAACGGAGATAT 849102 37 100.0 35 ..................................... CGGAAGCGATCGCAGCAAAACTCCTTCACCAATCG 849030 37 100.0 35 ..................................... AGATTGACATTAGTGGCGAAGTCATTGCTATAGAA 848958 37 100.0 36 ..................................... TTTTAAATCCCTTTTCCAATTAAATAAATCGGTATT 848885 37 100.0 33 ..................................... GAATGCGATCGTTATTGACCCCAATGGTATCTC 848815 37 100.0 38 ..................................... CGCGTACGGGAGAATTACTCGGTCTGTGTTGCGTGGAG 848740 37 100.0 38 ..................................... AATATCGCAATCGCTCTTCAGCAACTGCATTACAACTC 848665 37 100.0 35 ..................................... ACTAATGACATAGCTTTTATTTCCTTACTTGAATG 848593 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 32 37 100.0 35 GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCCTACGATATCTCTGAAGACAAGCGCCGTACAAAAATCCACAAAGTCCTCAAGTCTTATGGGCAGTGGGTGCAGTATAGTGTATTTGAGTGTCAGCTGAGCGATACTCAATATGCCAAGTTGCGATCGCGCTTACACAAACTTATCAAGCCTGATACCGATAGTATCAAGTTTTATTTTCTGTGCGCTTGCTGTTTTGGTAAAGTCGAACGTATCGACGGCGAACCACCCCGTGATGAGACGATTTTTTTTGCCGAATGCGCGGATGGGTAGGTGTACAAAAAGAGGTTTCAAAAAAAATGGCTGGATTGCTTACAGGACGAGGATTTCAAGGAAAAATTATTTATAACCATCCGCGCTCCTTGCCTAGACTGGATTTCAGCCATTCGCTGTAAATTGATTTAGTTTTTTTCATGCTATCATTAGATCATCCGCGCTTTGGAACCTTGAAAACTTTATATGGTGCAGTTTTCTGACTGCTGCA # Right flank : ATCTGTATTTCAAGTTTTGATAAAAAGCATTAAACTGTTTTATCTCTTACTCTGTGCCCTCTGCGCCTCTGCGGTTAAAAATACTATATTCAACTTCCGGCCATTTTCATCGTGCTATATTCAGCTTCATCTATTGCAGTTCGCCATACATCGTAAGCTTGTGTGCTCAAATGAAGCCCGTCTGTCGTCAGTTCTAAACGTAAGTTACCCTGAAAATCTGCAAACCAATCATAAAGATTTAAATAATAAACCCCTTCTTGTCTTGCAATCAGGGAGAGTTGCTCATTGAGATGACGAATGCGAGTATTAGAAATTGTAGATAAACGAGTTGGCAAAATCGATTGAAGAAAAATTATGGTTTTTGGGTGAGTGTGTCGCAACTTGCGAACAATTTCGCGGTGATTGTGTAAGATGATTTCATCTGTCGTACCCTTTCGCAAATCATTAATTCCAACCATGATATAAATGAAATCTGGTCTGGTTTCCCTAAAAACAGATAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 4 1305207-1306116 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030118.1 Brasilonema sennae CENA114 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1305207 37 100.0 35 ..................................... AATATTTCTGCAAGGAGTAACACCTTCTAATGTTT 1305279 37 100.0 38 ..................................... CTTGGGCATCATCGAAGTGGCTAGGTATACCTAACACG 1305354 37 100.0 31 ..................................... ACAGCTAGATGAACTCATTGAAGCCAGCTAA 1305422 37 100.0 37 ..................................... TTAGCAGCTGTAGCTTTAGCTGCTGCGGTCATCAGTC 1305496 37 100.0 39 ..................................... ATATGATCTGGAGGGCGAGTTACCCGGCAGTGTTGCCCG 1305572 37 100.0 37 ..................................... TGGCGTAGCGCCTTTTATCCAGGTGCCTCGCTCTGCT 1305646 37 100.0 38 ..................................... AGTACTTTTGGCAGCTTATATATTATGAGCAATGTAAG 1305721 37 100.0 39 ..................................... TTTGTTTGTGGGTTGTTGGGTGGTGATTGAGTAATGGGT 1305797 37 100.0 36 ..................................... GTTGCTATTGCTTGCACTGCAACAGAAGATGATACC 1305870 37 100.0 34 ..................................... TCAAGATAAAAACTTACAATTTCTTGAGCTATAT 1305941 37 100.0 32 ..................................... GAGTTGTTTTCAGCCGGAGGGGGAATCGCCTG 1306010 37 100.0 33 ..................................... AGCAAATCGATGCTTCCCGCTGGAGTGTAAACC 1306080 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 100.0 36 GTCGAAATTTATCTTTCTCCCTATTAGGGATTGAAAC # Left flank : GTCGCTTGTACCGTGTGGAAGTGTCTGCTCTTTTAACTCCCCAGTATCCCCGTGTACGCCGTAGCAACAAAGCTGTTGTCATTCCTTATGAACAGCTATCAGATTACATGCAACGGGTGCAACGCGAAGGAGGCAAGATTGCCAGCATCACACCTTTGTAGTCCCCTTTGATGAGTCGTCCTTTAGTGGAAAAACTACAACCGGTAATCAGTTATGGAACCTTCCAACTGCTGATTGCCGATTTTCTGTAATAACAGGATTTTCTTTGCCCAATGCGCGGATGGGTAGGTGTTGGAAAAAGGGTTAGAAAAAAAATGCCTGGATTGCTTACAGGATAAGGATTTTGGAGAAAATTTGTAATCAACCATCCGCGCTCCTTGCCCAGACTGGATTTCAGCTATTTACCTGTCAACCAATTTACTTTTTATGATGCTATCATTAGATCATCGGCGGTTTAGAACCTTGAAAACTTTATATGGTGCAGTTTTCTAACTGCCGCA # Right flank : CTTAAATTTTGCAAACTTTCATAATTTATTTCTTTCCAGCAAAGAAGTACCTATAAAGTAGTGGACTACTATTCTTATAAAGCGTGTTGAATGTCCAGAAAAGGAGAATCAATATCTAATTGCCAATTTTCATCTATAAATTCTAGATTTTCATCATAAACAAGTTCCAACTCGCCAATACGCAGTCTGTTATGATGACTTAAATTACCTTCAACATCATTTCTATAATCTGTGAGGATAAACTTCAATTGGAGAAAGCGTTTCTTCTGTGTTACGCCAATGGAACTACGAGTTAATTCAGCTTCGAGGGTGCGTGGTAGGGGAATTTATTCATAATATTTATCTTGTTCATCCCAATAACCGGATACTTTATAATCACATAAACAGAGATGTTCTTTAACAAGTGTATTGGCATCTATGTTTTGTAGGATTTCAGTAAAATCATGCCAAACTTGGTGATTTTTTAATTCAAGGTTACTCATATCTGATTTTGGATTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAATTTATCTTTCTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 5 4840043-4839273 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030118.1 Brasilonema sennae CENA114 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 4840042 36 100.0 38 .................................... ATTTTTAGATATCCAAGCCATAGCCTGGACTTTATCTT 4839968 36 100.0 38 .................................... GTTTGAATATAACCCTTCTCCGTTATCTCCACTGTATT 4839894 36 100.0 39 .................................... CAGCCATGAGCAACGACGTAAACGTGTTCACTAGAAAGA 4839819 36 100.0 35 .................................... TGTAGTAGCTAAGCCTACTCCTGGTATCATAACTG 4839748 36 100.0 37 .................................... TTTAACTGTGAACGATTGAGCAGTCAAACCTAAAATT 4839675 36 100.0 35 .................................... TTGCGGTGTTGTCGCCAGGGCCAACCTGGATTTCT 4839604 36 100.0 33 .................................... GTTTTGAAAACAGAAGGAATTTTCACTTTTCAG 4839535 36 100.0 36 .................................... TCGACGGTGTCCATTCCAAGTTTATCTTGAAGAATT 4839463 36 100.0 47 .................................... TCTTTCCCTAGAAGATAGACGGCGCCCACTTGGTACCCCCAATCCTC 4839380 36 100.0 36 .................................... GTAAGAGCACTCATTTCTTCGACAATCTGACGTGTG 4839308 35 75.0 0 .......-.TG.T......C.TC.G......A.... | A [4839295] ========== ====== ====== ====== ==================================== =============================================== ================== 11 36 97.7 38 CTTTACAGAACCCTTTCCCTGCAAAGGGATGGAAAC # Left flank : AAAATTCGCATGGTTGTGGTTTTGCCAGCACCATTTGGTCCCAAAAACCCCAAAATCTCCCCTGGTTCGACGTCGAAAGTAACATCAGTAATTGCTGAGGTAGAACCGTATGTTTTACTCAGATGTTCAACTGAAATCATCCGTTTTAGCTACGTGCAAATGGTAATTCATCAAACCATGATAAAACAACAAAACAGTTCTGAGCGTTGAGTACTGAGGAGCTACTGCATCTTTGGGTGTGGAGTCGGTCAAAAACTTGACAATTATAGGTGAGACATTTTATTTTTAGGGAGTGGGTTGAAATTTTATCGACACCACTCCTCCGATCCTTGAAAACCGCATAACTTCGTTGAGTGGTGTCGATTGCGCTTGTAGCAAGGTTTCCAGCTTACGAAATGAGAGTTTTATTGAGAAGAATCTTGCCCTTATTGACATTTAAAAAAGTGGTGTCGATTTGGGGGTCTCAAACTCTCTCCCAGTAAGGCTTCTACAAGTGAACT # Right flank : GACTTATGCCGCTAATTCCATTGTTAAAACTCACCACTCAAACTGAGATCTTGCACTTGTGCCAACAACCGCCTAGGGTTTAAACCCGCCTGCTCATAGTAAAAGTCGTCTAAAGACGACTGCATAAGCTTTTGAGTCTACTTTAGTAGACTTGAACTGTGAGCCTGGGAATTGATTCCCAGGCGGACGAGGTTGCGTTCTTGAGAATGGTGCAAGATCTCAGCGTTTTTGATAACCTCTTCCCCCAACGGGGATCAAAACCTCAATAAACGTAAAAAAGTTACATAGGTGTGCTTGTGTAAACGCAGTTGTAGAGTTATTTATGATTGTGATGATTCAAAATTTGTTTATTAGTCACTAAATGGTCAACTCTACCGTCGTTGCCACACTTACAATTTATGTCAACCCTACAATTGGCAATGATGCCAATGCTGGGACACGGTTAAATCCTTATAAAACAATTACCCGTGCCCTGAAGGTAACCACAACACCCAAAGTCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAGAACCCTTTCCCTGCAAAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 5102799-5103481 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030118.1 Brasilonema sennae CENA114 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 5102799 36 100.0 33 .................................... GCGTTTCATACACTAATTGTCTGTTTCTTTCAA 5102868 36 100.0 35 .................................... TTTAACGGTCCGTTAATATAGCCCAAGTCGATATC 5102939 36 100.0 33 .................................... GTTAGCGATGTCACCTACTTGAGCAGTTGGGTT 5103008 36 100.0 37 .................................... ACGCATTCCTTAACGCCCTCTCTGACCTCAACATTAA 5103081 36 100.0 37 .................................... ATTTCGTCGTTTTTTTTCGCGACATTATCTCCGCTGG 5103154 36 97.2 37 ...........G........................ ATTCAACTCGTAATCCTTGGTTTTGCTGCTGTTGTTG 5103227 36 100.0 40 .................................... TCTTGAGTAAAAAACCAGACATCGGAATTTTCGTTGTATT 5103303 36 100.0 33 .................................... ATTAAAGTAGCATCGTTTTTTGCAGAAGGATTG 5103372 36 97.2 38 ...............................C.... GGCCACCAGACTCCTTTGCAAGCTTGGTTATAATGCAG 5103446 36 69.4 0 ....C...TA..TC.....C....G......CTT.G | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 96.4 36 CTTTACAAACCCATTTCCCTGCAAAGGGATGGAAAC # Left flank : CTATAACAATTACGTTAGCCAAGTGTTTATTAAAATTCTAAAGTTTGCACAAAAAACTATTTATAGCAATTTTTATGCACTTTGTCAAATGTTTTAGAAGTCTAAATATCATAATGCTTACATTTTTTTCTTTCCAGGACTTACGCAAAGGAAACGTAGTTGTGTCATTGCGACGTAAGGAAACAATCTCACAATCTTGTTTTTTCGTAACTTGTGCGTAAGTCCTACTTTCTTAAACACCACTAACAGGTTTTTATACCAAAAATTGACATTTACACCAACTGCTATTATTCTTTCTATCAAGTAGTGTAATGTTCATCTACACACTAAGCCCGATCCTTGAAAACCGCATAACTTCGTTGGAGTGTGTCGATGGCTTGCCCAGTAAGCTTTTCAGACGTCAAAATTGATTTATTCTTGTGAGAGTTTAATCACTTTTTCGGAGTGTGTCGATTTGGGGGTCTGAAAGTCCTTTCCAGTAAGGGTTTCAGGAGTGACCT # Right flank : GAGCAGTCACTAAAAACTAAATCAATCAATCTTAAGTTTTTTGTTGAGGCGATCGCACTTAATTTTCATTGTCTAAAAAAGCAAAGATTCTTTCCGTAGCTATTTCCTTGGATTCAACTCTATTCTGTTAGGACTTACGCACGAGTTACGAAAGAACAAGATTGTGAGATTGCTTCCTTACGTCGCAATGACACAACTACGTTATTTTTGCGTAAGTCCTGTCTGTGTTCTTCTTAAAATCTCTATCCAAACAAAAAGCCTTCTCCAATCAGCCAATTTTTATACTAATAATTTATTAAGTCTTCTTTTGAAGATAAATCGCAATGCCTTGCAGCATAAGAAAATCTTATAAAAATATGCCCACCCACAACTTGTTTTTTATTTGTTACTGTTAATAATAATTAAATTTTTACCTTTGTTAAAACACTACTATGACTTTATACGCAGAATTACATAGACATCTGGGGGGTTCGGTTGTACCTCGTATTTTATGGCGGTAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCCATTTCCCTGCAAAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 7 5610771-5610950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030118.1 Brasilonema sennae CENA114 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 5610771 36 100.0 35 .................................... TGCAAGCAGATGGTAGAACTCTGCGCGATCGCCTG 5610842 36 83.3 36 ...TC....CG.A......C................ CTGTTACACTCGTTACCTGAGAACGTAACCGTGTAT 5610914 36 80.6 0 A...C.....G.CTT....................T | G [5610926] ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 88.0 36 GTCCTCACTTACTGGGGAAAGTAATCGAATGGAAAC # Left flank : CGGGTTGCTCGATTCCAGCATTGAGATTGCTCGCATGTGGCTTCAGGACGGGTTGATTGTGTCTACGGTCGATCGCCAAGGCGTGTCTGAGCAAGATAGCGCCAACGGAACCGCAATCACCGACAAACCTCTGGTCGTCCTAGTGAATGGAGAGTCTGCCAGTGCCAGTGAAATTCTCTCCGGTGCCCTGCAAGACAACGAACGAGCGGTGTTGGTGGGCAGCAAAACCTTTGGTAAAGGGCTGGTGCAGTCGCCGCTCGACTTGAGCGATGGCTCTGGTTTGATTGTCACCATAGCGAAGTATCTCACCCCCAGCGGTCGCGATATTAACCGCGCGGGCATCGGACCTGATGTGGATGTGGAACTCACCGATGAGCAGCAGCAAGAACTCTTCGTCCGTGCTAGTAACAAGATTGGGACTCAAGACGATTTGCAATACGTCAAAGCGCTGGAAATTCTCAACCAACAGATTGCTCAGCGGCAGGGAAGGAAAGCAGAAA # Right flank : TAACACTTCCACAAAACCGTCATTAAAGCTATAAAACAAAACTCACCCCAAACGATCGGCACCTACATTGGGAGATGATATGAAAAAATCAATAGTTATAGCCGTTGCCAGGTAGATTAGGACATGAACTCATGAAAAAATATGGACATTACGAGACTTTCAAACTTCTTGACAAGTTAAGCATTTCCTATTCCCTGTTAAGCGTTAAGCGCGATGCACTGCGCCGCCCTGAGCTTTGTCGAACGACCGACCAAGTGTTCCCTGTTCCCTACGTCCTAATAGAGTTGGCTATAGCTATATCATTAAGGCAGCAGGGGTGCAGCCAAGCGCTCGGGTGCTCGGGTGCTTGGCTGCTCCCTTTTCCCTCTTAAAACTTCAGTTGAAATTGCGAATCTGCATCTGTATCCATTCACGATCAACGATCGCATACAGCAACGAATCTTGCCACTCACCCTTAACCCATTCATACTCTCGCAAATACCCCTCCTGTCGCATCCCGA # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACTTACTGGGGAAAGTAATCGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.90%AT] # Reference repeat match prediction: F [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 85% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 8 6230826-6231294 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030118.1 Brasilonema sennae CENA114 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 6230826 36 100.0 35 .................................... GTTAATCCCGCAGCGGGAATGGCATATTGGATCCA 6230897 36 100.0 39 .................................... AATCTTTGCTACTACTAATCTACTCAATTCTAGTCTATC 6230972 36 100.0 37 .................................... TTCAACTGTAGTACAATTTTCTGGTAATCTAGATTAG 6231045 36 100.0 33 .................................... AGCATCATTCCGCTCATCAAACAACCGCGCCAC 6231114 36 100.0 36 .................................... CATAATGTGTCCTTCTTGTCCTTTTTGCATCAAAGG 6231186 36 97.2 37 .......A............................ GTGAGTTCTTGACACTTGACTATGCTTTGTTCACCTA 6231259 35 75.0 0 ....C..TTG....AC....-A..G........... | T [6231271] ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 96.0 36 CTTTACAGAACCCTTTCCCTGCAAAGGGATGGAAAC # Left flank : TCTGCTTTATTATTCGCTGGATATCAATTGTTTAATACGGGTAAAGTCTTGAATTATAGTTTGCGATCTTTTAAGGGATTATTTAAGAGATAGTTATTATGGCGATCGCCCGCAAGGGCTCGGCTCCCTGCTGGAGCATCGCCAAGACAATCCTCGTCAACGTGATCCGATTCAACAGCTGATGTTTCTGTGCCAGTAGGCGACTTGTCTGGCTTTGTGGAGTTGATTGAAAAATGTTGAAAGAAAACCACGTACTTTGTAAAAAACTTGACAATCATAAGTGACATACTCTATTTTTAAGACAGCGTGTTGAGTTCATCTACACACTAAGCCCGATCCTTGAAAACCGCATAATCTCGTTGGAGTGTGTCGATGGCTTGCCCAGTAAGCTTTTCAGACGCCAAAATTGATTTCTTCTTGTGAGAGTTTAATCACTTTTTCGGAGTGTGTCGATTTGGGGGTCTGGAAGCCGTTTCCAGTAAGGGTTTCAGAAGTGAACT # Right flank : CTTATTGATAAAACAGTTCAATACAGTCTTTAATATTACTTAAATACAGGCGGTTATCCCTCATAACATAACAGCCTCATTTAACACTCGTTCTCGAATGCACTCATGCAGAGTTTCAGATTCAGCCACATCTACTTTGCGTTTTAGCAATTTTTCCAGTGACTGTATCAAAGCAATCTGATCTAACAGAGTTCGTTTTGGCTCAATTTCTACCAGAAAATCCACATCACTATCTCGTCTTGCTTCTCCCCTAGCTACGGAACCAAAAACTCTGATATTGTAAGCTCCATGTTGAGCAGCAATTTGCAAGATTTGTTCACGATAAGGCAATAATAATTCATCAATTCCCATAACCGAATCCACACTGTATTTATCACTCATACTAACTCTTTATGAAATTGCACTTTGTTTACCTCCCGGCTACGCTGTGTTGAAATATAGCGCTTTTCATCCAGATGAAGTAGATTTTCATCTGCGTCGAGAGTGCGTTTATCTGCGGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAGAACCCTTTCCCTGCAAAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 9 6472915-6471927 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030118.1 Brasilonema sennae CENA114 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 6472914 37 100.0 34 ..................................... TTGGATGGAATTATGTAAGAGTTACGCCTTAAAA 6472843 37 100.0 36 ..................................... AAGAAGAATCAGAAAAGTAGCTGTAGAATAGAAGAG 6472770 37 100.0 34 ..................................... ATTATTTGAGATGCATTCGGCTAGTTTGTTTACC 6472699 37 100.0 36 ..................................... TGGTAAACGTTCGCCGCAGTTATTAATCCAAAACCA 6472626 37 100.0 38 ..................................... TTTGATGAATTTCAAACTGAGTTCGGCAGTGATTCTAT 6472551 37 100.0 35 ..................................... TTTGTATATAAGGTAAATCTTGTCTACTGTCTACA 6472479 37 100.0 35 ..................................... GCTGCTGAAAATCTCAATGAAAGCAAATCCGAAAT 6472407 37 100.0 36 ..................................... TACTTAGTAATGTTAAGGTACAGGCTAGATTACAGG 6472334 37 100.0 36 ..................................... CCAAAAGCCTAAATCCCGAAAAGTATCAACTAAGAG 6472261 37 100.0 34 ..................................... AGTTCGAGAGAACGGTCTTGAGTTTGCTGGAACA 6472190 37 100.0 36 ..................................... TTCCCCCATAGACACGAGAATAAAACTATCAATGGC 6472117 37 100.0 41 ..................................... GCTCAATTTGATGCGCGATCGCACACCATAGTTTTCGTTGA 6472039 37 100.0 39 ..................................... AATAGAACATCAGGATATTGCTTGTACAAGGATTCGCAA 6471963 36 73.0 0 ........C.CCC....T..CC-.....A...A.... | C [6471950] ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 98.1 36 GTTGAAATTATTTATTCCCCGTTAAGGGGATTGAAAC # Left flank : GATGCCCCATTTTTTGTTTTAACTGTAAAAGGTGCTGGCAGCAACTGTGAAAAACCATTTGGCACGTTACAAGAAGTTGATGGGATTTTTGCTGAACCAGGTACGCATTTGATCAGGGACTACATCAGAACTCGAACGGCTTTCAGATTAATCCTCCAGGGTATGTACAATGAATTAAAAGATCCACAAAGCTGGAAACTGACTTATCCACGTAATATTACTCCTAATAAAACCTCAGAATTTTGAAAGACTGCGCGGATGGGTAGGTGTTTGAAAAGTCAAAAGGACATTTGCGGCTCAAAGGCTTATCAGCTCTGAATTTGAGAGTTTTTCAAAAAAACGGCATCCGCGCAATCGCTAGAACCTTTGCCAGGAGTGAGTTTGAGGCTATTTTGAAATTGGCACTACTTGACACCTGATCGCTGAAATGGTACTTTTGTTATACATCCGCGCAACCGCACCTCGAAAACTGAATTGGTCATGGGTTTCATATGACAGCA # Right flank : CAAAGTAAGAGTTAAAGCGAGATATTTTATCTAATATTGAAAATAATTGCAGATGCCAACACCAACATTAATATGCTTACCGATACTCATGCAGCAGAGAAAACCAATCATTCTCGCCAAAATGTATTGATTGTTGGGGGAGGTCCAGCAGGACTTGCCACAGCATTAATGCTAGCCAAACGTGGTTGGACAAATATTACAGTTTTGGAAAAACGCGCCACTGCTGATTACTATGAACCCGACAAATCATTCAATTATCTCATTGATGGTCGGGGTCAAAAATTTACTGACTTCCTTGGAATAACTGACAAGCTAATAGAAATCAGCGTTCCCAATAAAGAATTTTATCTAACAGAAATCAAAGCCAACGGAAGCAAAAAAACATTTAAACTACCTTTTGTCGATCCAAAGCAAAAAACAGCTTACTGGATTCCCCGAAGGGCATTTGTTCTTTTGCTATATCAAGAAATTGAACGTAATTGGCAAGACAAGATCACTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTATTTATTCCCCGTTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //