Array 1 166966-159998 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOV01000009.1 Chryseobacterium gambrini strain DSM 18014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================================================================================================================================================================== ================== 166965 47 83.0 30 T.CC..TGCG.A................................... TCTGATAGACAACTACTCTACTTGTGAAGA C [166959] 166887 47 100.0 30 ............................................... GCACTTAAATAAAGAGTTTGGTTTATGTCC 166810 47 100.0 30 ............................................... TTTCAAACAGCCTGCTCATTATTCTTTTCT 166733 47 100.0 30 ............................................... TGGAATACCTGCCTGATAAAACAGATCATA 166656 47 100.0 30 ............................................... TAAATTCATATTCAGAATTCGAGGATCTAA 166579 47 100.0 30 ............................................... TTTTGCTTTGGTAAGAGCAATTGCAGTAAT 166502 47 97.9 30 ...........A................................... TGCAAAAGTATGCCTTCCGACATGCATCGT 166425 47 100.0 30 ............................................... AGGCTAGAGTGGGAAAAAACTTCCGCATCC 166348 47 100.0 30 ............................................... CTCCTCAGTGTATGACTTTTGAGCGACAAC 166271 47 100.0 30 ............................................... TTTAAAAGTTTAATAATAGTTATTACAGCT 166194 47 100.0 30 ............................................... TTGATTTGCAGATGAAAAATCGATAGGTTT 166117 47 100.0 30 ............................................... GTATGCAGATAACATACGAACGGCACGAAT 166040 47 100.0 30 ............................................... TGTAGCCTTTCTGAAAAATTCAGAGGAGAG 165963 47 100.0 30 ............................................... TAAAGAAAAGATCATCGTTCCGGATGGTCC 165886 47 100.0 30 ............................................... ATTATATGACCATTTAATTTATCCATTATG 165809 47 100.0 30 ............................................... ATATGGGTGAAACATTCATCGATCTATACA 165732 47 100.0 30 ............................................... TTGAATGCTCATCACCTTGACCACCTCCAA 165655 47 100.0 30 ............................................... TTCCCATTTGTTAGTTATGTTAGATTAGAT 165578 47 100.0 30 ............................................... AAGTAACTAAAATAGAACAATAACAATTTA 165501 47 100.0 30 ............................................... TCCTGCAGGAGTGAACCCATATTGTGCCAG 165424 47 100.0 30 ............................................... TTATGAAAATGAAGTAGACAGCACAGAGCT 165347 47 100.0 30 ............................................... TACCTTTATTGCCTAACAAACACCTGCTTA 165270 47 100.0 30 ............................................... AATTGTTATTTTTCCCCAGCGATATCGCTG 165193 47 100.0 30 ............................................... ATAAAGATTCATATTGCTTATTTCTACTTT 165116 47 100.0 30 ............................................... TCACGCGGAAGTGTTGGCAGTACTGCAAGA 165039 47 100.0 30 ............................................... GTTCAGGGTCTTCTTGATTACTTAAAAGTT 164962 47 100.0 30 ............................................... TTTATAGTTATCGTGATATTTAACCTTTAT 164885 47 100.0 30 ............................................... TTTAGCTTTGGTAAGAGCAATAGCAGTAAG 164808 47 100.0 30 ............................................... TTGGTTTGCACTTGAAAAATCAACAGCCTT 164731 47 100.0 30 ............................................... CTTTCCCTTAATTTCTTCGTTTGTAGTTAC 164654 47 100.0 30 ............................................... AGTACTAAATAACTCTCCTCCATCTTTAAC 164577 47 100.0 30 ............................................... GGTAGCATAAATTACACTTAAATTAGCAAC 164500 47 100.0 30 ............................................... CTTACCTTTAATTTCGTCATTTGTTGTAAC 164423 47 100.0 30 ............................................... CGCCCTATGTATTATAATAGTACAGTTAAG 164346 47 100.0 30 ............................................... TTCAGCATCTTTAAGATTTTTAGTGGTCTG 164269 47 100.0 30 ............................................... AATATTCTTATAAGTGGCATAAATTAAACT 164192 47 100.0 30 ............................................... GAACAGTTCATAGCACTGGCTAAAAATGGT 164115 47 100.0 30 ............................................... TTTTGCTTTCGTAAGAGCAATTGCAGTTAG 164038 47 100.0 30 ............................................... TTAAAGTCAATCAACCGGACTATTCAAAGT 163961 47 100.0 30 ............................................... TTTTTGCCTTCGTAAGAGCGATTGCAGTAA 163884 47 100.0 30 ............................................... ATACTCACCTGCTCCATGATACTTGATTGG 163807 47 100.0 30 ............................................... GTGGCAGAATTACAATAAAAAGGGTGAAGC 163730 47 100.0 30 ............................................... CAGTATCTTTACAATGTATCTTTATCTTTA 163653 47 100.0 30 ............................................... TTAATCTGAAGTTTTAAATTGTTTTTAAAG 163576 47 100.0 30 ............................................... AAGCTCTGCACAAATTGATATAATGCTCCT 163499 47 100.0 30 ............................................... CATTTGTTAACGGAACACCGCCAGTTTGTA 163422 47 100.0 30 ............................................... ATCCTCCGTTAAAGAGATTTCCGGACTTGC 163345 47 100.0 30 ............................................... GGGAAATCTTCCGGGAACAAACTATTGCCT 163268 47 100.0 30 ............................................... GAGGAGATTGTGAAGGCAATGGAATCGTTA 163191 47 100.0 30 ............................................... TTTCTAAATTAGAGGATCTAGCCAAATCTG 163114 47 100.0 30 ............................................... TAAAATACAATAGAATAGTACTTAACTGTA 163037 47 100.0 30 ............................................... AGAGCTATCAAACACTGCCCCTGAGTATCC 162960 47 100.0 30 ............................................... AGGGCTTACAAACTCCGAGGCATGCGACCA 162883 47 100.0 30 ............................................... TAGTTATGATGGGGGAGATACAACTAAAGG 162806 47 100.0 30 ............................................... AGAGCCAAAAATACGGAGCTCTTTAATAGA 162729 47 100.0 30 ............................................... TTAGATTTTGAGATCTTAATCCTGTGTTAT 162652 47 100.0 30 ............................................... ACCTCTATCCGTGTATTTCACTGAATTAGA 162575 47 100.0 30 ............................................... TGCTGATTTTGATTAGCACAATCAGTCCAA 162498 47 100.0 30 ............................................... AATATGCTGCAAGCTGAAATGATGCAAGCT 162421 47 100.0 30 ............................................... TAGCTCTAATAAAAGAGTTTACTGCCAGTT 162344 47 100.0 30 ............................................... GCACATAAGATTTAATATTAAGTCTGTGAC 162267 47 100.0 30 ............................................... GAGGGCTTTGAGGATTACCTGAGAGAGCAC 162190 47 100.0 30 ............................................... TTCCTACTAAAGTACCGTTAATGGATGGTA 162113 47 100.0 30 ............................................... GTACCAGTAATAAACGTCTTCATGCTTCAT 162036 47 100.0 30 ............................................... TTCTCCAATTCCCATAATTTTTTTTTAGGT 161959 47 100.0 30 ............................................... TGATTTAATTTACTTGATATAATTTTCCAA 161882 47 100.0 30 ............................................... TAAACTCTTGCTCTTCTATCTTAAGCTCCT 161805 47 100.0 30 ............................................... ATCAGCCATTGCGGGGATATAATCTACTAT 161728 47 100.0 30 ............................................... ATAGGTAATAAGTATGACTTATTGAAGGGT 161651 47 100.0 30 ............................................... GGTATCGCTTGACAACCCAAACTCCGGAAG 161574 47 100.0 30 ............................................... GTAAATAACCTCAGCAGATCCGCTAATAGA 161497 47 100.0 30 ............................................... TTGAAAAATATTTGAGTTATAAACATATTA 161420 47 100.0 30 ............................................... CCTAGCTTTTAAAGCCTCATACTCATCCCC 161343 47 100.0 30 ............................................... CTCCTGTAGTAGGGGTATAAATATCCGGGA 161266 47 100.0 30 ............................................... ATTGGTTACTCCATTACCAAAATAAAAGTG 161189 47 100.0 30 ............................................... ATTATTAGCGCCAGAAAAGTCAATAGGCTT 161112 47 100.0 30 ............................................... AAACTTTGAATAGTCTGGCTCATTAACGTT 161035 47 100.0 30 ............................................... TAACGCATCTCACCACTGAATCTATCAAGT 160958 47 100.0 30 ............................................... TAATAAGGATTCTACCGATGTATCTACACG 160881 47 100.0 30 ............................................... AGTATCTCAGCAGGAAAGATGAATAAGCGC 160804 47 100.0 30 ............................................... TAGCTTTTCAAGGTAATGTTGTAAAGAAAT 160727 47 100.0 30 ............................................... ATGAGAATCTGATGAAGGATGAGAAGTTTA 160650 47 100.0 30 ............................................... AAAAATTGAGGAATTTCAAAAATATTCCAA 160573 47 100.0 30 ............................................... CTCTTCAGTGTAATTCTTTTGCGCAACCAC 160496 47 100.0 30 ............................................... CCTTCGGTAATGATTTTTGCTCTTGTAAGA 160419 47 100.0 30 ............................................... GAGCAATTGCCATAAATATACCGAACTCAT 160342 47 100.0 30 ............................................... TAAGATAGATAAAGATACAAAGATATTGTA 160265 47 100.0 174 ............................................... CTCAAAATCTAATCCATTGGTTTTCAATGGATTATTTTATATTTTAAAAATAACAAAATCTCTAAAAGTTAATTATAATCTATCTCTAATTATCTTTTTTGATTTTCTATTTGGGAATTGCTTTGGCTCAGCCAACTCGAATCCAACGCTTTTCGTCGAATCCGCCCACGCTTA 160044 47 72.3 0 TCC.GCTGCG.A........T....................G....T | ========== ====== ====== ====== =============================================== ============================================================================================================================================================================== ================== 89 47 99.5 32 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAAGAACAAC # Left flank : ACTCAGACTCAGCTTAATCAAATTCTTTTCGTCGAATCCGCCTACGCTTTTCCTGCAACGGATTTCAAAAATTATTATTTTTGAGACAACATGAGTTTATATGAATTGCTTTGACTCAGCCTTAGCTTAATCAAACGCTTTTCGTCGAATCCGCCTACGCCTTTCCTGCAGCGGATTTCAAAAAATTATTATCTTTAAAACAACGTGAGTGTATGTAAATTGCTTTGACTCAGACTCAGCTTAATCAAATTCTTTTCGTCGAATCCGCCTACGCCTTTCCTGCTGCGGATTTCAAAACTATTATCTTTGAGACAAGACGAGTTTATATGAATTGCTTTGACTCAGCCTAGCTTAATCAAACGCTTTTCGTCGAATCCGCCTACGCCTTTCCTGCTGCGGATTTCAAAAATTATTATCTATGGGCAGCAAAAGTTTAATGTGAATTGCTTTGACTCAGCCTTAGCTTAATCAAATGCTTTTCGTCGAATCCGCCTACGCTT # Right flank : CTCAAAAAATAACCTACTGGTTTTCAGTAGATTATTTTTGTTTTCAGGATTCAAAATTCAGAACAATTCGAGCTGTTGGAAGGTTGGTGGCGGTTCTTCTTTATTTCTGGCAAAAAAGATTTCGATGTCTCCAAACTGTTTATCCGTAATGCACATAATGGCAACCTTTCCGGCTTTCGGAAGCATAAATTTTACTCTTTTGATATGAACTTCTGCATTTTCGCGGCTCGGACAATGACGCACATACATCGAAAACTGAAATAAAGTAAATCCGTCATCAATCAAAGCTTTCCGAAAACGGTTTGCATCTTTCATATTCGCTTTCGTTTCGGTCGGGAGGTCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGCGTTCATTTTTGGTGACTATTGTTTGTTTATTGTAATAATCGCAGCCCGACCTGAGTGGAGCTCTTTTTGCAGATTTTTATCCTTCGGCTCCGCTCAGGATAAACTACAGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAAGAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAAGAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.70,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //