Array 1 46540-44908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUI010000003.1 Veillonella dispar strain 1001216B_150713_A10 NODE_3_length_204937_cov_15.1523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================================================================================================================================= ================== 46539 35 80.0 36 A.G.G.G..CA.T...................... ACATCGATTAGCTGTCCACAATTTAAAAATAACATT G [46524] 46467 35 100.0 36 ................................... ATGAACACAACCTCTGTGTCATCGAAATCTGGATTA 46396 35 94.3 40 ..........CC....................... GCTACCGGCATAAACGCACCTTCGCGTTTTCTAGTTTGCT 46321 35 85.7 41 ..G....T..G.......A...T............ AAGATACCATTAACAGTATCCGCATATTTCAAGTATCAATT 46245 35 77.1 40 ....T......G....TTA....TAA......... GTAGAAAAATATGTATAGATTATATGCAACTCTATTATTA 46170 35 82.9 35 .A.A..T...CC....................G.. TGATTGCAGTACTTGTGGCAACACAGAATTCACTA 46099 35 74.3 84 ....T.....C.TC..T......T.....C...GA GTGTGAGACAGCAGTGGAGCGGCGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGTGAAGGTAAAACGAACGTGAA CGTG [46067] 45976 35 80.0 153 CAA.T......G.....T...............G. ACATAATCACGAACTTTCTCCATGCGTTGTACTTTCTCGCTTAGTTGCAATAGCACCTTATGTGCGGAAGGGTGTGAGACAGCAGAGGAGCAAAGCGATGATGAAGGCCACACATTGCTTACCTGAACGAAGGGAAGGTAAAACAAAGGTGAT 45788 35 85.7 42 .AG.A..T...T....................... CCACTTGCCATGTTTGTTGCAAGTGCTTCTAACTCATACAAA 45711 35 97.1 36 ..........C........................ TTTAATACATCCTCCTTAGTTTTAGAGGAGAAATTG 45640 35 97.1 39 ..........C........................ CCAGTGATTTCTGTATAATCACCACCAACAAGGTTCTCG 45566 35 100.0 35 ................................... TATTTAGACATGAATCCAAATGCAACTAATGTAGA 45496 35 91.4 37 ..........C.TC..................... CTATGATAAAAATTAATCATTTCTTAAATTTCCTTTC 45424 35 91.4 38 .......T..CC....................... TCCTTTGCTGTTCTGTTGTCAACAGCTTCGATTACTTT 45351 35 97.1 40 ...........G....................... ACTTTGCTGCTTACGACGCGTTTTGCCCATGATTTCCGAA 45276 35 74.3 148 ..A....A.A..TC..TTA............G... TCCATGAACGTATGATTATCATACTCTGGAACGAGGTTACAACAGCATATGGTATGCGCCGAAGGGGGCGAGGCTACAGAGAGCAACTCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGTGAAGGTAAAACGAAGATGAT 45093 35 82.9 39 AAG....T.....C....A................ ACCATTAAAATTTTACTATCAATAGCCGCACAGTAGTAA 45019 35 97.1 42 .................T................. CCATCAGTAGTGAATGCTACGTGACGACCATTGCTGTCTGCA 44942 35 74.3 0 ......C...C..C...............GCGCTG | ========== ====== ====== ====== =================================== ========================================================================================================================================================= ================== 19 35 87.5 53 GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Left flank : CCTTGGGCCATCTAGACTTAGCGAAAGAAGAATACCATAAAGCGTACAATCTAGCTATGTTCTCTAAAGCATGCTGGCAGCAATACGAAGAAGATAACGGTGGAATTTGGAAATCCGATGAAGACTCTAACTTTGGAGGTCCAGAATTGAAACTAAAAGACTGGATCAAAGAAAATACTGTAACATATGATACCATAGAAGAATACAAACAAAACTTAAGTAAATATATGACCTATATATTTGATTAGCAATCTATTAGTCTATTGGTTTACTAGTCTATGTAAAAGCCACCTAGCACTTTGTTAGGTGGCTTTCTCTCTTTGGAGCATAATAAGAATAGAAAATATTAGAATATTAATATAACCTACTTCGTTAAAATATAATGAAGAGAAAATGAATTAAATATTGACGCAAAATCTGAAAAACCTTATAATTACTGTAACCTTAGAAAAATCATTTACTACCAGTATTTACCTATGCTCATCGGCATTTCTAATCAA # Right flank : AAGGGTGCGAGACATCAGAGGAGCAAGGCGACGATGAGGTCCGCAGATCTCAAGTGCCTGAGCAAAGCGAGGGTAAAACAAAGGTGATAAGGCAACAACGTTTACCCTTTACGGTATGCGCCGCAGGGTGCAGGACAGCAGAGGAGCAAAGCGACGATGAAGTCCGCACTTCTCTTACCTGAGTAAAGTGAGGATAAAACGAAGGTGATGAGGAAATAGTACTTACTATTTATGGTTCTATTTGTTTTGTTTGTGATATAATAATTTCAGATTTAGCCCTCAGAAAACCAAATCTGCGCCGTTGTGATAGTGGCGCGGTTAAACGGCATTATTTTAGTTTGTTAAAGTGCCTTTAGAGGTCTATTTACAATCTCCGCCGTTTTTTGTATTTTAGAACCAGTAAATATCTACTGTTTCAGAGATAGGGTTAAATTAAATAATCCCCTAATGGGGACGGAACCTAACACTCATTTGTCCGATTGATTGGACGTTATTGACTG # Questionable array : NO Score: 6.39 # Score Detail : 1:0, 2:3, 3:3, 4:0.38, 5:0, 6:0.25, 7:-1.41, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [29-47] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 2 64324-62957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUI010000003.1 Veillonella dispar strain 1001216B_150713_A10 NODE_3_length_204937_cov_15.1523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================================================== ================== 64323 34 74.3 36 .GGAGCC..A.-..G.................... AATACTGCGACTGGTACAAATTGACCATCACGTTGA 64253 35 91.4 38 ...A.......C.............A......... TCTGGACAATCCTCGCCCATATGATGAGCTACGATGCG 64180 35 80.0 84 T.........CA.C...............C...GG GTGCGAGACAGCAGAGGAGCAAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGAGAAGGTAAAACGAAGGTGAT CGCG [64148] 64057 35 82.9 38 CAA.A..T...C....................... CAGAATACGCCTACAGCAGTATTGCCAGTAGCAAGTGA 63984 35 100.0 38 ................................... GTCTCAGACTTAATGCCTACCATATAATGGACTTTACC 63911 35 100.0 39 ................................... CCAAGCATATAACGCCAGTTGCGATGCTGGCTCTAACAG 63837 35 100.0 39 ................................... TCTAAAAACATATTAATATTTGTCATAAGCTCGCAATGG 63763 35 94.3 39 ...........A.C..................... ATTCCAAATATCGTACGTGCCATTACTTTAGTCCTCTCT 63689 35 91.4 44 ..........CA.C..................... TTTCTGAGAGACGCAGCAAACATTGCAATAGTGGCGTATTCAAC 63610 35 88.6 34 .......T..CA.C..................... AATTGATTAGCTACTTTATTCCCTTTACGAGAAA 63541 35 91.4 38 ..........CA.C..................... TATTTTCTGTTTAGTTTCTTATTCATTTTTCTCCTCTT 63468 35 80.0 84 .......T..CA.C...............C...GG GTGCGAGACAGCAGAGGAGCGAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGCGAAGGTAAAACAAAGGTGAA CGCG [63436] 63345 35 80.0 38 .AG.A..T...A.C...T................. TCCGCTCTTATTGCTTTTTTACATCTTCAACAGGATTT 63272 35 74.3 88 ..........GA.C...............GCGCCT AAGGGTGCGAGACAGCAGAGGAGCGAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGCGAAGGTAAAACAAAGGTAAC 63149 35 80.0 35 .AG.A..T...A.C...T................. TGCCACGCAATTTACAAATGCGGTTTGTTCCTTTG 63079 35 82.9 49 .............C........GT.....C...GA TGTCCGCACTTCTCTTACCTGAACGAAGTGAAGGTAAAACAAAACTAAT CGCG [63047] 62991 35 80.0 0 .AG.A..T...A.C.G................... | ========== ====== ====== ====== =================================== ======================================================================================== ================== 17 35 86.6 48 GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Left flank : GGCAGGATATAGAGGTATGATGTTTTAAATAACTCCTAGTTTTTCTGAAATGATAATCATAGATAGACAAACTATACTAACAGTACAAACAAAGTAGCCATAGTTAATAGATTAGGAGTGGATTCCAATGGGTTAAACTAACCAATTATGTAACTGAGTATTTTATAGTTTGTAATATGGAGGATTGGAAATGGATTGGCTATTAGCAGTACTCATTAAAGTCTTTTTCTTAGACTGGTTTGATAATTTATAAGAAATATAACTTTAATTATAACAAGCCCTATATACACAGAAACTGTGTGTATAGGGTTTATGTATTATGTTTGAGGTATCATTTTAAATAGTAACCTACTATTAAAAACGAAATCAAAATTTGTACATGAAAAGAAAATGAATTAAATTATTGACGTGGAATCGAGAAACCCTTATAATTACTGTAACCTTAGAAAAATCATTTACCACCAGTATTTACCTATGCTCATTGGCATTTTTGATCAAAA # Right flank : GTTACATTTTTAGCCTTTAACCCTGTATGAGTTGCGTTGCAACAGCCCTTACCGTTTATGGTATGTTTCAAAGCTTGCTAGTTATCTAACTTTAAAACCACATAACCTAAAAGAACTGTATTTTTGTGTATAACACAAAGATACAGTTCTTTTTTGATTCCTAGTTTTTCTGATTAGTTCACTTTCCGTATCGTTCGTATAATTAACTCAACAAGTTTGATAGATCGTTTACAGGAGGTAGTATATGGCAATGTTGTTGTTAACTTTATTAGTTTGGTTTGTATTGCCATCACGGCATGACTATTAAGGAGGGTATAATGGAAAACTTTCGACAAGAATTGAAGTCTATGTTGTCCTTGTCAGGGCGTATGAATCGTCGGTCGTATTTTATGAATTTATTAATGATCTTTGGTATTGGCTATATTGGTGGTGTCTGTATTAGTCTTGCGTATGTGTCAAAAATTTTCTGGTTATTAGGTTGGTTAATCATAGGTTATTCT # Questionable array : NO Score: 7.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.33, 5:0, 6:0.25, 7:-0.75, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [49-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 3 73458-71812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUI010000003.1 Veillonella dispar strain 1001216B_150713_A10 NODE_3_length_204937_cov_15.1523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 73457 35 100.0 43 ................................... TTAACCAAAGAATTGGTATCAACAGGCTTGCCATCACAAATCA 73379 35 100.0 37 ................................... CCAATAAAGATTCTTCTTTTTGTTCCAAGATAGAACT 73307 35 100.0 35 ................................... ATAATCTTTTAAGAATTCAGACCGGACTTTATATA 73237 35 100.0 35 ................................... ATGCGGCATTGTTTTCCCTCATCCAAACCTTTGCT 73167 35 100.0 40 ................................... CAACTGCAGATTTCATGTTAGCGAAACCGTTAGCATTAGA 73092 35 100.0 37 ................................... CTCAAGGACGAAACCTGTATACTCCTTGCTGATAACA 73020 35 100.0 36 ................................... AATTTCCGTTAGGAAATTTCTCTTTATGAGAGTCTA 72949 35 100.0 38 ................................... GCAAAATCATTAGATTTTACTAACAGTTGTTTCTTTGG 72876 35 100.0 39 ................................... ACAATTGCCTCAATCTCATATGGTCTACCATTCTTTTCC 72802 35 100.0 44 ................................... TTAAGTGGATCATATACATCTACTTTGTGGATGTATATAAACCA 72723 35 100.0 35 ................................... TGTTTGAGCTCTCTTATCATTTTGGCAACAATCTC 72653 35 100.0 37 ................................... GAAGCTCCTCGAAAATCCTTCTTTCGAGGGGCAAAAA 72581 35 100.0 41 ................................... AAACAAACGTTTGCCGTCGACTTGGCTGTGACCGGCACGAG 72505 35 100.0 42 ................................... CTTCAACAACTTTTAAAGATTCAAGCTGCTTTTCTTCACTAG 72428 35 100.0 40 ................................... CCCATTACAGTGTCTTCAGAAAATATGGAGATGTATTCTC 72353 35 100.0 41 ................................... CTATTAGGAAGCAAGAAGAATTTATAACCTTTCTCTTGTGC 72277 35 100.0 38 ................................... TGTTTTTCTCCTCTTAATGAAACAATTAAATATGCTGA 72204 35 100.0 31 ................................... GGAAGTGGTATTCCCATACGACGCACTTTAT 72138 35 100.0 44 ................................... TTTTTCATGATAGGGAGGAAAACATCATAATACAAGTTATTTTT 72059 35 100.0 36 ................................... TTAAACTCCTTCCCATTAGCAGACCATAAGTTGCCA 71988 35 97.1 38 ...........A....................... CAGTCAAGGTCGCACCCCATATTATAAGCAAGGTTTAA 71915 35 94.3 34 ..................A....T........... TTACGGTCTACTACTGGCAATTTTTCACCCTCTT 71846 35 77.1 0 ...........C...G.............GCGCCA | ========== ====== ====== ====== =================================== ============================================ ================== 23 35 98.6 38 GTTGCAACAGCTCTTACCGTTTACGGTATTGAAAC # Left flank : TATAGTAAAGTTGTAATAGATGGTATTTTATAGTCTAGTTATGTACGATGCAGCAGTATCTAGCATTTCTTGATGTGCCTTATGACAAGGTATATCTTACTTTTGATTCTGGTGAAAGGATCTTTCTCAATCTGGATAAGTGGGATTGTGTATACTGATAGATGAGGACTTTCAATATAATCGACCATCCATGTTTATGCGAATGGGTGGAGCAACAATTCTTAGCCGGTTGATTAACTAAATAGATTAATGGTAAGACTGATGGATAAGTGATGTAATTCTTTTTGAAAGTTAATGAAAAGAAAATGAATTAAATTATTGACGTAAAATCGAGAAACCCTTATAATTACTGTAACCTTAGAAAAATCATTTATCACCAGTATTTACCTATGCTCATCGGCATTTTTGATCCAATGGGAGTCCAAACTGACCGTTTACGGTGTGAGGTTTGCCAAAACCTAATTTTAAATCCCATGAATACTGGTCTTCTGAGGCACGCT # Right flank : CAGAGTGTGAGGCAGCAGAGGAGCGAAGCGATGATGAGGACCATACATTGCAAGTACCTGAGCAAAGCGAAGGTAATAAGGTAAGAAGCTTGCTGCTTACGATTCAACAGATTTAAGTATCAATAAATAAGGAAGGCCCTCTTATTAGAGGGCTTTTTTGTATGCAAAATATTTAGCTGTATTCTTGTTTTGATTATGAAGATAAGATGATAGAATAGGAGTATATATTACAGTATACGTATATGTGGGGGTAGTATGTTAACAATCGCATTGAATGAATATGGGGACTTTCACCATTTAGGGCAGAAAGAAAATAGTTTAAAGCACGTCCATTTTATTACGGGTATTGTGTATGATGATGAAGGTAGTGAGCAGGATTTGCGTAATGAGCAGATTCGTTTAGATCGTTTTTTTAGAGCTGTAGCTGAGGCTTCAAACAGTGATTATCCACAGGGTTTCTTTGGTGATACTAAAGTAGACGATGTGGAGAGGGATACTGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGCTCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //