Array 1 171128-170184 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QBJL01000005.1 Salmonella enterica subsp. enterica strain CFSAN058581 CFSAN058581_5, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    171127	    29	 100.0	    32	.............................	CTGGCGACCGACCGGGCAACGAAACGGGCTGC	
    171066	    29	 100.0	    32	.............................	CCAGGACACCTCACGCTTAACGTTGAATTCAG	
    171005	    29	 100.0	    32	.............................	TTTGTTTTTGAGCTGAAGACGCTTCCACATCA	
    170944	    29	 100.0	    32	.............................	ATCCTGATACAGGCTTATCAGTGGCTCTTCTT	
    170883	    29	 100.0	    32	.............................	CCAGACACGGAGCCGTGCATTTCGGGGTAGAG	
    170822	    29	 100.0	    32	.............................	ACAGGTATTGATGTTACCGGATTATCCACTGC	
    170761	    29	 100.0	    32	.............................	TGATAAAGAAACACTCTCTTTCTGATAAATAT	
    170700	    29	 100.0	    32	.............................	CACCAGTAGAGCAAATCGCTGTTGCGGCCAAC	
    170639	    29	 100.0	    32	.............................	AATCCAGTCAAACATAACCATATCCTTATCAA	
    170578	    29	 100.0	    32	.............................	CAGTTGCTCAATGAGGAGATTAACAGCGACGT	
    170517	    29	 100.0	    32	.............................	ATTTCGAGTACCAGTTTAATAACGGTTAATAT	
    170456	    29	 100.0	    32	.............................	CAGATTAACCCTGTGGTCACAACACCCCTGAT	
    170395	    29	 100.0	    32	.............................	GTGACATTTGTTACCGACACGGAAGAACAGGA	
    170334	    29	 100.0	    32	.............................	GATTTCCGCGACGTGCTGCCGACGCGTCTGGA	
    170273	    29	 100.0	    32	.............................	CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC	
    170212	    29	  86.2	     0	............T............G.TA	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  99.1	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT
# Right flank :  TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//