Array 1 27866-27170 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POPJ01000070.1 Streptococcus suis strain 347 SS_0347_Contig70, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     27865	    36	 100.0	    30	....................................	AAACCTTCCGGGAGGGTCTGTAGAGTCAAC	
     27799	    36	 100.0	    30	....................................	TGACTTGCTAGAAGTCAAAGGTTTTGTTTC	
     27733	    36	 100.0	    30	....................................	CACTGCTTGGAATGGTGATTTTCTGGATTT	
     27667	    36	 100.0	    30	....................................	TGGTGAAAATTTCATTCATTGGCACTGCGG	
     27601	    36	 100.0	    30	....................................	ATCAATATCAGAGCATGGGCTGATTCTGTT	
     27535	    36	 100.0	    30	....................................	AGGTGAGTCAATACTATCATGACCGCTATA	
     27469	    36	 100.0	    30	....................................	CAATCCGCAATTTCTCTTTACGAGCTTCGA	
     27403	    36	 100.0	    30	....................................	TTCAACGTAGGGACTCGGAAGCTGGTCGGC	
     27337	    36	 100.0	    30	....................................	AACTACTCAATTAATCGGAAACTTAAAAAT	
     27271	    36	  97.2	    30	...........................C........	GACCCCGTCTTTTTCTTTCTTCATTCCATA	
     27205	    36	  94.4	     0	..........C...T.....................	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  99.2	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC	                              	       

# Left flank :   TATTCCATACCTATCAATCAGTCGAAGCATATATTGGATAACAGATTCTGAAATAGTAAATTGGTTTGACAAGTTCTTGATAGACTGACCACTTTGGCGTAGTTCATAGATTTCGAGTTTGTCTTCATAGCTCAATTTCATAAAAATAGCACCCCAAATGTTAGATTTTTTCTGTCTAACTTTTGGGGTGCAGTTCATATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGA
# Right flank :  TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCGTCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTAATTTAAGCTTCATTTTTTTAGGATGAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAA

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-2.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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