Array 1 155372-156985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJS01000002.1 Pectobacterium carotovorum subsp. carotovorum strain B5 B5.scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155372 29 100.0 32 ............................. TTGGCCTACAACCTGTCCCGTGCGGACCATTC 155433 29 100.0 32 ............................. GGTACAACTGTTAGCCGACAATTCGACTAACA 155494 29 100.0 32 ............................. GTGTGGCGCAGGGCAAATCCGAAGGCGCTACT 155555 29 100.0 32 ............................. CGCACGGTGCGCCTTTGTCTGCCGCGATACAC 155616 29 100.0 32 ............................. CGATTGATAGAAAAATAAATGACATGGAATTA 155677 29 100.0 32 ............................. CGCACTCATACCTACAGCATCAATGGTCTGAG 155738 29 100.0 32 ............................. ACGAGATGAAGCGCCGAGGAATTCCATCACCA 155799 29 100.0 32 ............................. TTCGCGGGCTACAAGAGTACGTCCGTGAGCAG 155860 29 100.0 32 ............................. GTCGCGGTTAAGCTGGGTGAGCAGCACGACGA 155921 29 100.0 32 ............................. AGTGTGATGCCTTGCTTGCTAAGCATATTGCA 155982 29 100.0 32 ............................. CCGCCATGTCTTCCTGATCGGCAGTTGTCAGG 156043 29 100.0 32 ............................. TTAATGTTCAGCTGACGAGCGGCATTTTTCAG 156104 29 100.0 32 ............................. AATGACAGCGACGGATTGATGACCCTATTCCC 156165 29 96.6 32 ............................T ACATTTCTGGACCGATGACGGGAATAGCTGAC 156226 29 100.0 32 ............................. TTCTGGCCATCTGTTGACGTAACACCACGGCT 156287 29 100.0 32 ............................. ATTTTGGTGGACCAGCACGATGTCTTCGGGGT 156348 29 100.0 32 ............................. ATGAAGCCATGCGCGGTTACTGCGACTATCAC 156409 29 96.6 32 ............................T TTTTTGACGCCGTACAGGGTATCGCCTTCTAT 156470 29 93.1 32 .A..........T................ GCCATCAGGCATAGCCCCCAACGTTGAACGAA 156531 29 100.0 32 ............................. AATGCGTGCAATATAAACAAACAGGAATAGGC 156592 29 96.6 32 ............T................ GTTATTATGCCGCAATCTCATTACCGCACTGA 156653 29 100.0 32 ............................. GCGTTCTGTAATGGGTATCCAGGTTGAGGTGA 156714 29 100.0 32 ............................. CACTATCCCGGTCATGGCACGACGCTGATAAA 156775 29 100.0 32 ............................. AGTTAGTTCAAGCAACAGAATGAAATATGCAT 156836 29 96.6 32 ............T................ TGCTCACCACAATGCGGACACGGCCAGTACAA 156897 29 93.1 32 ............T.............T.. AACACCGCACCGATGGATCCGATTGGTGCATT 156958 28 75.9 0 ........T.T..T.....A..-.C...A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTATATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : ATAATTAGTTGAAATCGCTAAAGAATTATCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCGTCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 159748-160249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJS01000002.1 Pectobacterium carotovorum subsp. carotovorum strain B5 B5.scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================== ================== 159748 29 96.6 32 ..........T.................. CCGATGAGCTGATCGCGTACCTGGCCGATGAG 159809 29 100.0 32 ............................. CGCTATTACCAGGTTAATGCAAAAAACCAGAT 159870 29 100.0 32 ............................. ATATAAATAAAGATCCCCCTCTTACTCCCCCA 159931 29 96.6 32 ...................A......... CCGTAAACAATCATCCAGTTCGCATGGTCTGG 159992 29 100.0 78 ............................. CCAGAACATGTCTTCACCTGGTGATACCGCCAGCGGGGATAAACCGTCTGAGGCGATCAGTTCAGCCAAGACATACAC 160099 29 100.0 32 ............................. CGCAGAGTGATGGTGTCGCTGATATTTATATC 160160 29 96.6 32 .............T............... CGGGACATCATCCAGCAACTCGGCATCAGCGA 160221 29 93.1 0 ............T..............T. | ========== ====== ====== ====== ============================= ============================================================================== ================== 8 29 97.9 39 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTGCTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGATTGAGAAAGAATATTTTTAACAGGGAAGATTTTTACCGAGAAATAGAAATAAAAACGCAGTGGTATAACTCTTGCCGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGTCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACTGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGGGCCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCTATTTTTGCACCCACCGTAACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTTCCAGTCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGTGGTGCTGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGTCCTGCTGAACTGTATGACACGGTCGAAGGCCTTGTCAGCAGTGGGAGGTTGGGGCGTGAAGAAGGCTCTGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.49, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 165876-166384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJS01000003.1 Pectobacterium carotovorum subsp. carotovorum strain B5 B5.scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165876 28 100.0 32 ............................ ACCGCATCACTTCCACCGATATAGCTTTCCGC 165936 28 100.0 32 ............................ ACCACGCGATACTGAATAGCGACCGTTACCGC 165996 28 100.0 32 ............................ AATACTTTTTCTTTTCCCTGTAATTAATGTGA 166056 28 100.0 32 ............................ AATCAGCCAGGAAGTGAACCATCCGACGCAAG 166116 28 100.0 32 ............................ CGAAGCCGCGACTCATCCGAATTCGAAACTGT 166176 28 100.0 33 ............................ CATACCTGCTGCATATCAATGTCATGTTCGTAA 166237 28 100.0 32 ............................ GAAAGGCGGTTTTTTTTTATGGTGACAATATG 166297 28 100.0 32 ............................ TTTAACTTTTCTTGCGCACAAACTCGTGCTGG 166357 28 78.6 0 AC.........T.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCATCAGCGCGCTCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGATCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGGTATTAATCACTCGACTGTATATCCATAGCATATGCAGATACCTGACATAGGCTTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCCGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTAATTGAAGTACGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACAGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGGCTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 174334-172806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJS01000003.1 Pectobacterium carotovorum subsp. carotovorum strain B5 B5.scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 174333 28 100.0 32 ............................ TTGCACGAAAAGGACATTTCTGATGACGTCCG 174273 28 100.0 32 ............................ GCTATCGAAATGAATGATGCGCTGCTGTCTGC 174213 28 100.0 32 ............................ AAAAAGAATCTTATTCCTCGCTTTCGTTGTCC 174153 28 100.0 32 ............................ GGGCTATCCGTGCTGTGGTTTACATGCACTCT 174093 28 100.0 32 ............................ ACCATAAGTACAATCATTAGCGTTGGGATTAC 174033 28 100.0 32 ............................ CGCCCGTGGCTGGGAGCGCTGGCGCAATCGGA 173973 28 100.0 32 ............................ ATAAGGCACGGTGAAGTAGGTCTTTGTCAATT 173913 28 100.0 32 ............................ TCTGCATTTTCTGGGTTGCTGCCGTTATTCGT 173853 28 100.0 32 ............................ AGAGATTTATGCCGCGCTGAACGCTGAGTTTT 173793 28 100.0 32 ............................ ATCCAATACGACCTGATGCGACACTGCGTCAT 173733 28 100.0 32 ............................ GCGACATGTGCGCACTGTTCAAGTGGGCGACT 173673 28 100.0 32 ............................ AAGACAGCCAACGAGATCCAGAAGCTAAAACC 173613 28 100.0 32 ............................ GAAATTCACACGCCTGCATGAAGTCGCCAGCG 173553 28 100.0 32 ............................ CAGCGAACAGGGAAGGGTGATAAAACGCATTG 173493 28 100.0 32 ............................ GACATGAGCCGCGCCGGGGCATTCGCGAAAGA 173433 28 100.0 32 ............................ TAAACAGGTTTTGCGCGGTTCGCTCGTTGTCG 173373 28 100.0 32 ............................ TCGCGTAAAAAATTGGCAAAACTGTTATTCAC 173313 28 100.0 32 ............................ TCAGTGCGGCTCAGGTTGCTAATCAGTTCCGT 173253 28 100.0 32 ............................ ATGGCAGGAAATTCATATTTACACCGGATGCC 173193 28 100.0 32 ............................ TGAATATATCCAGACACCAACGAACACGCCTT 173133 28 96.4 32 ...........C................ AGCCCACACATTTTGTTATTTCTCGTATCAGG 173073 28 96.4 32 ...........C................ GGAACGGATGCGGCTATTCCATTAACCGCATG 173013 28 92.9 32 .........A.C................ TGCGTAATACGCTGCGCTGGCAAGTTAACGCC 172953 28 96.4 32 ...........C................ CGTATGTCGCTGACAGAACGCGGCGTAGGCGT 172893 28 96.4 32 ...........G................ GTAATGCGACAGGTTTGCGTCCGAACCTGATG 172833 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================ ================== 26 28 98.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACCACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCTGCGAATAAGTCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGGAAACTAACGAAAATCAGCCTATCACAAATATTCTGGGAAAATGGTGGCTGCGAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGTTAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCAACG # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTACAGGGAAATAGCGCGTTGACTTAAGTCAAATTCAAGGGAGTGAGATGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGAACATCTTGATTTTAAAAAGCAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 183309-183696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJS01000003.1 Pectobacterium carotovorum subsp. carotovorum strain B5 B5.scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 183309 28 100.0 32 ............................ AGTTCTGTAAGGTTATGTCTAACATGGCCTGT 183369 28 100.0 32 ............................ AGGTGGACCAACACCTGCGGAACTGGCCTATG 183429 28 100.0 32 ............................ AGCCCCAGCAGCGCGTTTTTACGCTTCGCCAT 183489 27 96.4 33 ..........-................. ATAACAAGACTGGAACGCTGGCTCGATCTTTAT C [183504] 183550 28 100.0 32 ............................ ACACGGTCACGAATAGTGATCCGCATGATTAA 183610 28 96.4 32 ...............A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 183670 27 89.3 0 .............C.......-....T. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCCACTCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGTTGGTTTCTGCGTGTACAGCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAACCCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGTTGACGGAAGCAGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAATCCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAACGG # Right flank : ACTTATCGGGATGCGTCGCTGGCGCGACGCATATCGTGGAGTTATTCCCCGTTGAGTGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAAGCTGTTGCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTTTCGTTAATCGTTAGTGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACTTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //