Array 1 189280-191443 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWN01000004.1 Salmonella enterica strain BCW_6260 NODE_4_length_310038_cov_2.98077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 189280 29 100.0 32 ............................. AATACTCCCTGCTAAAGTTGGCCAAGTAGTCT 189341 29 100.0 32 ............................. GATCGAACCATCTTCACGATATTCCACAGGGG 189402 29 100.0 32 ............................. CCAACACCGCCAGTTTTACCAGCGCCGCCCGT 189463 29 96.6 32 .......T..................... CGCACACGCTGGGGCGTAACCAGGGGCAGGAA 189524 29 100.0 32 ............................. CGCACACGCTGGGGCGTAACCAGGGGCAGGAA 189585 29 100.0 32 ............................. GCCCGAAAGGCGAGCCTGCGCCAGCTTACGGC 189646 29 100.0 32 ............................. GCTGGTTCAGTTAATTATTAGTGAATTACGGG 189707 29 100.0 32 ............................. GCTACACCGGCAAAATGCTGCAAATGAAAGGC 189768 29 100.0 32 ............................. TCACGCGCCCCCTCCCCTTATTGGGTCGGGCA 189829 29 100.0 32 ............................. TTCCCGAAAGACAGCGCGGTTGCCCCGGCTCC 189890 29 100.0 32 ............................. AATGCGGAGTTGAGTCACTTTCCCCTTACTAT 189951 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 190012 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 190073 29 100.0 32 ............................. AACACGTTGCGTGGGAGAATCTCTGTCTGCCG 190134 29 100.0 32 ............................. TCGGCATCGTGTCACCGCCGGTGGATATGTCC 190195 29 100.0 32 ............................. CGCCTAGGAGAACTTGTGGGCTACTCCCAAGC 190256 29 100.0 32 ............................. ACCAGCGATCTTATTAGCACGACCAAATTTTT 190317 29 100.0 32 ............................. TGTTTCGTTATGATCGTTCAGATTACAGTCGC 190378 29 100.0 32 ............................. CAGGCCGATGAGTGGGAGGTTATTAACGCTCT 190439 29 100.0 32 ............................. AGATATATCCAATATTTAAAAATGAAAACAAT 190500 29 100.0 32 ............................. GCGATTGGCGGCGTTGGTTCATCGTTAAAATG 190561 29 100.0 32 ............................. GTTTCGGACAGATTAAAACAGTCCATTACTCG 190622 29 100.0 32 ............................. CGAAAATGCTTTGTATTGTCCATTGGCACACC 190683 29 100.0 32 ............................. GTCAACATGTATGTTGTTAACAATGAGTTGCT 190744 29 100.0 32 ............................. TTGCGGCTCGATTGAGTCCAAATCGCAACGAT 190805 29 100.0 32 ............................. GTCATGCGGTGAAAATCCTTCTGCTTTAATCA 190866 29 100.0 33 ............................. TTACCGCTAATCGCAAAGATAACAGCGGCCACA 190928 29 96.6 32 .C........................... GCCATCGACGGACAAGAAAACCCACCGGAAGA 190989 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCTGCCTGCTGAG 191050 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 191111 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 191172 29 96.6 32 .............T............... GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 191233 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 191294 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 191355 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 191416 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 200185-202166 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWN01000004.1 Salmonella enterica strain BCW_6260 NODE_4_length_310038_cov_2.98077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200185 29 100.0 32 ............................. CGAAAATCATCGCCGCTAAGACGCTATTTCGC 200246 29 100.0 32 ............................. CTAGTACAGTAGAGAGTTCGGGTAAGGCGGTT 200307 29 100.0 32 ............................. ATGTGCTCAATGAGTATCTTGTTATCCCGTTC 200368 29 100.0 32 ............................. CGTATTCCACCCAGCCGCAGCATAGGCGACAC 200429 29 100.0 32 ............................. GTGATGAATTGCCATCCTTCAGAAAATTTGAA 200490 29 100.0 32 ............................. CTGGCCTTACCGCTGGCTGGAATTTTGGCATT 200551 29 100.0 32 ............................. AGGATCCGACGGGCGATGATGACCAGCCAGGC 200612 29 100.0 32 ............................. GCGGGTAAAAATGCAGACTGATATCAAACGCA 200673 29 100.0 32 ............................. GACTGTTTTCATATATCACCCCTTGCTCCAAA 200734 29 100.0 32 ............................. CAGCGCCCGCCGGTGTTGCGCTACCGCGTGTT 200795 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 200856 29 100.0 32 ............................. ACCTGCGTCGCGCAGCTCGCAGCGCAATTCGA 200917 29 100.0 32 ............................. CCATTGATGAGGCTATCGCAGCCGCACAACGG 200978 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 201039 29 100.0 32 ............................. GGGCAGCGCATCGATTTTGACGTGGAAACGTT 201100 29 100.0 32 ............................. CGACAATATGAACATGATGAGAACCCCGCCGA 201161 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 201222 29 100.0 32 ............................. TCTCGCCAGTGGCCTGAACCGAAAGACGGTGA 201283 29 100.0 32 ............................. CACATCACGGATGTGGTCTGCATTTTGAAATC 201344 29 100.0 32 ............................. GAAATAACTATGTTTTGCTCTGCATTATCTTC 201405 29 100.0 32 ............................. TTGACGCGGAGATATATTCATTCAATAAATCC 201466 29 100.0 32 ............................. AACACAGTTCATACAGCCGACGCGTGACGCTC 201527 29 100.0 32 ............................. CGTGCCCGCTGACAATACCGTGGGTGTAGGCC 201588 29 100.0 32 ............................. TAAGAATAAACGGCTTTTTTCGACATTCCAGC 201649 29 100.0 32 ............................. CGTTTATGGCCGGTGCAAAATTTGGTGCTAAT 201710 29 100.0 32 ............................. CGGAACTTGTAAAGGCGACGCAGGGTTTAACC 201771 29 100.0 32 ............................. TATGGAAATCAAGGCGCTGGCAGACGGGGAGT 201832 29 100.0 32 ............................. GACCAGATTAAAAAAACGGGCTGGACATGGGG 201893 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 201954 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 202015 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 202076 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 202137 29 89.7 0 A........T..T................ | A [202163] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATACTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAAAGATCCTGCTGTGGAACGATTCCCTCGTGTAGCAACTGCTGGTAAGTATCCAGCGCATCATCAACCGTGTTGCGGATCCAACAAATGCACTGTCCGGTTGCCACAACGCGATAAATAATGTCCAGTGCTTCCTGGCGCTGCTGTATCCAATTAACGGCTACAGTCCTTTGGAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //