Array 1 111804-110264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENOE010000002.1 Listeria ivanovii subsp. londoniensis strain MF8005 MF8005_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 111803 29 100.0 39 ............................. GTTGTTGTTGCATTCTTTTTAGTTTCATACTCTACTAGG 111735 29 100.0 37 ............................. AATTTATCCGCTATCTTGCGGGCTAGGGGCTGATACG 111669 29 100.0 36 ............................. GTTTTTTTGAATGACGAAGTTGAATATAAGCATATG 111604 29 100.0 37 ............................. ATATTATCAATTAACGCCATCACGATGGCAATTATCG 111538 29 100.0 36 ............................. AGATGTTTCCTTATTCTTCCACGCTTTTTCTTTCCG 111473 29 100.0 37 ............................. GAGGCTGAGAGCTTGGCATGACTATTTGGTGACATCG 111407 29 100.0 35 ............................. ATCATATGCTGGGTATGGTAGACTTCTCATCAGAG 111343 29 100.0 35 ............................. TTCTAACAGCGAACTGCTTAATTGCTTCCTGTTCG 111279 29 100.0 37 ............................. ACATTAGTACTCAGCTTCACTTATTTGAGTTACTTGG 111213 29 100.0 37 ............................. GGTATCAACGTTCGATAGAATGATTAGATACATTGCG 111147 29 100.0 38 ............................. AAGGTATGTCGGATGCCGCACAAGTGATTAACAGTAAG 111080 29 100.0 39 ............................. CGAGAAATGGGCTAGGTTCATGGAATATTGTAGACAAGG 111012 29 100.0 37 ............................. TTTCCTACTGCGCCGCTGTCACTTCCGCCATGCCCGG 110946 29 100.0 37 ............................. ACAGCTAATGCTTTTGTAAGCAAGTCTGCATTCCCTG 110880 29 100.0 36 ............................. TGCTTCTTTTGCGAACTTTCTGATGTATTTTTTTCG 110815 29 100.0 37 ............................. CCAATTGGCCTTCTTGTTCATTAATTGGAGAATACGG 110749 29 100.0 37 ............................. AGCTAATTTGGTACCGGGTTTGTACCATTTAATTTTG 110683 29 100.0 35 ............................. GCCAACCACGTACTTACTCCGGTTTCCATTTTCGG 110619 29 100.0 35 ............................. ACGAAACCAGCAAGTAAAACAAAAGAAAAAACAAG 110555 29 100.0 37 ............................. TCAGATGAGGAATTAAAACGTGCAGAAAACAGTAGCG 110489 29 100.0 36 ............................. GGAGATTGGTTCCGCAAGTATCGCATTTAGCTTTTG 110424 29 100.0 36 ............................. CGCAAAAGCGAGGGCATCAGAATTATTTAATTCGAG 110359 29 100.0 38 ............................. CAAGGATAATTTGCTATCTATATTCTGTGTATTTTTTG 110292 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 24 29 100.0 37 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TTTAAAATTTGGTGGTGAGTATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCAGCACTTTTGGTGAAATTACGAATGGAGCTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCAGATGAAAAAACATCGAATTTCTTTTAGCTGGTTTTTTCTGTCGCCCCCTAGTAGTGTGAAAAACACTGGAGGTCGACAGAAACATGAAATGCGTTGGTGGAGAAGCTTTCTCGTATATCTTACTTAGTTAAAATAGGAAAACAAAACTAAATTTCACCTATTTTTGTATCGGTCGACAAAAATAGGTGCGTGAGGTAAGATGGGAGTAAGGAAAGATTTTGACGGG # Right flank : TCTTACAAGAAAAGGATGAGCGAGAAGAGGCACTGCCACTAAAAAATGAGAATAAAAGAAAAACACTTTCGTTGGATTCATGTAAAATGAAATTAACGGAGGTGTTTTTTCATCATGTCCCACTTTTCTGAGCAGACTGATTTTATTTAAAAAATCAGTTTCTCAATAATTAGTGTATTCTCTTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAAGGAATAAATTTTCAAAATTAGCTAACTGGAGTAGTAGAAAACGGAAAAGTGGAAATATTTCGTTCTATTTTCATTGAAAACGAACAAAAAGGAGAGCTTAAGAATGAAAAAAATCGTACCAATCAGTTGTATTGTTGCAGTTTTAATGCTTCTAGCGAGTTGTGGTAGTGGAGATGCATCCAGTTCAAAAGTGGAGTTTTATACGGATAAGGGCGGAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 125400-123302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENOE010000002.1 Listeria ivanovii subsp. londoniensis strain MF8005 MF8005_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 125399 29 100.0 37 ............................. TTTTTTGTGGACAATTTCCATTGGTGATTTGCCGAAG 125333 29 100.0 36 ............................. ATCGATACAAAGAAAATAAAAAGCATTCCGTATGTT 125268 29 100.0 37 ............................. TCAAGCCGGAAGCTGCTAGTACTTCCCCTGATTTCTC 125202 29 100.0 36 ............................. TTCATTGGCGCTAATATAAACGCAATTAATAAGACT 125137 29 100.0 37 ............................. TTTTTTAAGAACTCGGATAAAGGTTTTATGGAATTTG 125071 29 100.0 36 ............................. GTCATTTGAATCAAATTCGCATCTTCCATGATTCGG 125006 29 100.0 35 ............................. ATTGAAGAGCAATATGCTCCGGAAGAGGACTCTGG 124942 29 100.0 36 ............................. GTGATAAATGAACAAGTGAAAGCATCGGTGAAATTA 124877 29 100.0 34 ............................. TTTTCAGACTAAGACAGCGGATTTATATCATATT 124814 29 100.0 35 ............................. ATGAGTTAGAAAAGATGGGAATAAGAACAGAAATT 124750 29 100.0 35 ............................. ACATAACCTTCTAGTTGATAGTATTTTGTAACAAA 124686 29 100.0 34 ............................. AAAGAAATATGCGAGAATCTTTTGCAAATTCCTT 124623 29 100.0 35 ............................. AAAGGCTTTCCAGATTTATTCGGATTTCGCGGAAC 124559 29 100.0 36 ............................. AATTAAAAATGCTAACAAAAAACTTGCGGATATGCT 124494 29 100.0 36 ............................. AAGCTAACAATAGACATTGCGACCGCTAAAAAGACA 124429 29 100.0 36 ............................. ATAAACGAGGGGAAATAGGCAAGTAAACCCCATCAA 124364 29 100.0 35 ............................. GCGATACAAACGTTAGAAAAGTCAACGATTATTGC 124300 29 100.0 35 ............................. TTTACCTGACTGCCTACCGAAGTCCACTGCGCTGC 124236 29 100.0 36 ............................. GTCAAAGCCACTTAGCGCAATAATCTCCGGTGACTT 124171 29 100.0 37 ............................. ACCACATCCGTTTTAGTAGTTAATGCTGTTGTTGAAG 124105 29 100.0 37 ............................. ACTGGATATAAAGGTTCTTTCAAGCAAGAGAACATCA 124039 29 100.0 35 ............................. TTAGAAGGGGCAAAAATTGAAATTAGAAATTCGCA 123975 29 100.0 34 ............................. TTTATTAGTCCGCCAGTCATTGATACTAGTTTTC 123912 29 100.0 37 ............................. TCAACTATATGTTTAGTCACTTCGAACTTTTGATTAA 123846 29 100.0 35 ............................. GTTTTTAAAATAGCTACATTACTGCTACTAAGTTC 123782 29 100.0 34 ............................. GTCTGTATTGCTAGAAAAATAACTGCTCTTGATA 123719 29 100.0 34 ............................. TACCTTGCTGGGGAGCTGGATATATTGGCTTTTG 123656 29 100.0 37 ............................. TAAGTTAAATTGCTTTCAATTCGCAAATCTTTTAATT 123590 29 100.0 36 ............................. CCTCTCGTGAGTTCTATTTTTTGTCTCGCTACTTCG 123525 29 100.0 37 ............................. GAAGGATAAAATATTTTAAGAGTAGGTGAAATCCTAC 123459 29 100.0 35 ............................. AACGATTTGTGTCTTTATTTCGAAAAAGGAAATGA 123395 29 100.0 36 ............................. ACTGCAGTTGTTTTATAAGTTTTTACCTAGTCAATC 123330 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 33 29 100.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATAAAATGTCACTGTACCATCTTTCTTTTCTGTTGTTTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTGTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAGTGAGTTATTTGTTTATAGAATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTATGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATACATTGGGAGAGAATGAGAGTGGGAGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCTTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : ACTTCTGGAATATGTGGGAAGAAAGAACGAAGTCGACATTTATATCCTCTGAACGTGCAATTGTATAATAAATCGAAGGGACTTAAATATCGAAATTGATTTTGAAAATGTGGTTAATTATTGAACAGTATAATTGGCATGTGTGGAAGGGAAATTCAATACATACCAAGAGACAGATGCGTTTTTCGATGTGTGAAAATGAAAGAGTAGAAACATGGTTCTACGCAACGGATTAAACCAGATAGAAACAATTATGTCCGTTTGGAGTAAATTGAGAAATTGCAACAAAAAAACAAGGAACTAGTGCAAAATTAGTTTCTTGTTAGAGAGGGTGTCGGTTATTTTGAAGGATAGAAGTTTCTAGAGACTGCAGGTCAGTCATAATTTCTTGAACAGAACGTGTTTTTAACGAAGATTCTTCTGTATTAGATTCTTTTTCTTTCTTCTTTTTGGCTTTTTCTTCGGCTTCAATCTCAGATACATTTTTAGATTCATAGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //