Array 1 6432-5669 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGW01000024.1 Aerococcus urinae strain UMB0232 ERR1203647.17957_1_59.24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 6431 32 100.0 34 ................................ CTTTTGGTACCTCTGCGATCGCCTCATCATGGAC 6365 32 100.0 34 ................................ AACGCTGATCCGTAGGTTAACCCCTCGTCTCTAC 6299 32 100.0 34 ................................ AATAACAACTGGTTTCTTTCTGTATTTCATTAAC 6233 32 100.0 38 ................................ ATAATATGGGCTTAGATTTTAAAGAAGGTAGTGTGAGT 6163 32 100.0 35 ................................ CATTTTTCTGATCATGTCGTAGATCTCTTGTTTGC 6096 32 100.0 34 ................................ CGCAATATGCGAATGGTATTGGGTTTTCTACCGG 6030 32 96.9 34 ..........A..................... AAGTGGACTAACCGCCATCTTTCTTTAGGGCCGT 5964 32 96.9 35 ..........A..................... AGCTCCAATTTGTCGCCATGGACTAAATTGGCCGG 5897 32 96.9 34 ..........A..................... AGCTCCAATTTGTCGCCATGGACTAAATTGGCCG 5831 32 96.9 33 ..........A..................... CCTCCTACTTAAACTTCTGATCATCCATATATC 5766 32 96.9 34 ..........A..................... TAAGAATTGTTGAAACCATGAGTGAAATTCGCTT 5700 32 84.4 0 .......A....A...A...AC.......... | ========== ====== ====== ====== ================================ ====================================== ================== 12 32 97.4 35 GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Left flank : AGCTATTGGCAAGGTATATCCGTGGAGACATTGACTACTATCCGGCATTTATTAGTTAAAGGTGATTTAAGATGATGGTGTTAATTACTTATGATGTGAATACCGAAAGTAAGGCTGGCCAGAAACGCTTACGTAAGGTGGCTAAGGTCTGTGTTGATTATGGTCAACGCGTTCAAAATTCCGTTTTTGAATGTAGCTTAGATCCTGGGCAATTGGCACTCGTTAAATCGAAATTAGATGGTATCATAGATAGTGAAGTCGACTCGATTCGTTTCTATAATCTGGGTAAGAATTGGGATCATCGAGTACAAACCTTAGGACGGGACGATACCTATCACCCTGAAAAGGATGTCTTACTCTTATAACGAACCCCAAGCACACAGAATTGTATCGGTAGCTTCGTTTGTATTTTGGACTCAAAAATACAATATAAGTGATTATTTTGCTCTTTTTATAACACTTATATTATGAAAATATAGTGAAAACTTGTAAAAAGAGCT # Right flank : TGTAATTGCTGATAGTATCAACATTAGTAACGAGGGTTCAGACTTTTTGTCTGTATGGATTGAATTATCAGTTAACGAAAAAGCGATACGTTTTTCTTGTCGCAATTTATACACTTATGTAGGTAGAAATTAATATGCGGCTAAGTATTACAAATATGGTCCAAAGTTGTAGGCTTTCTTTCAGCAAAGATTGACTATTTATACCAAGCAATCAGCCCTTGCCAGCTCCTCCATCAGCGAGCTCAACAAGGGCTTTTTCTATTACATCGACTCATAAAAGCACTAAAAAAATTAACCCAATCCCAAAAATAAATCACAGCCCCACTAAAACCGATCATTCTTGATCCTTTTTCCTAAGTTGACAGTAGTCCTTGGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Alternate repeat : GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : NA // Array 1 50087-50421 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGW01000006.1 Aerococcus urinae strain UMB0232 ERR1203647.17957_1_59.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 50087 30 100.0 31 .............................. TGTAGGTGGAGAGAAAATGAGCAAAATTGTA 50148 30 100.0 31 .............................. ACGCTACTCTAGTCTTAAAGGTGGACGACAT 50209 30 100.0 31 .............................. TGTTGGAAGGTATATTTAGACAACTAATAAA 50270 30 96.7 31 ............................C. ACCGCGTTATACGTGCTGCTGCCTTCTGATT 50331 30 100.0 31 .............................. TGATAAGCACAAACCCATTACAAGATTCATT 50392 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 6 30 98.9 31 CTTTTTCCCGCAGACGCGGGGGTGATCCTG # Left flank : GCAAATTGCTATGTGCTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGAAATCTGATCAAATTACAAATTCACCGGATTATTGAGTCAGAGTATGATTTTGGCCGGCGTGACAATGCCTTATTATGTCCGCACTGTCAGGAACAGCTGGGCTCTTTGAGTGAACATAAGGGCCGGCCTTGTTATTTCTTGCACCGAGGACGAGTACAGACCAAACGCTTGCAGCATTATAAAAGCTAGCCAAGGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGGAATTGGGTAGGTTAGGAATGACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : CAGCAAGGCGAATTAGCTTTTAACGAAAAAGGCTTTTTCCCGCATTTATTTGGAAATTAATAATATTTGATTTAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGCTTTGATCAATATTTCTTTTGAAATCATCAGCTCGATTTATCCAAGCCTTGGGGTGGACATGCTATAATATAAAAGTAAAATAACTTTATCATCCTTTCCTGTGATAGGAGGATTTAAAGCAAGTAGGTATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTACTCGGAGTGTTTTCATATCTGGGTCGAGAACGCAAAACCAATTATCCCAAGAAGTACTAGATTCCATTGACGCAATTATTGACCAAGGCATAAAGATTAACCTAGGGGATTCCAACAAGGGGGTCGATAAGGAAGTGGCTGACTTGCTTCGACTTGAAAATTATCAGGCGGTTGAAATCTTCACCATTAATCAAAAGCCACGGATTGCCATTGAAAAGGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCAGACGCGGGGGTGATCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //