Array 1 155183-156507 **** Predicted by CRISPRDetect 2.4 *** >NZ_PECY01000220.1 Mycobacterium marinum strain VIMS9 VIMS_contig000220, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 155183 36 97.2 37 ..................C................. CTTTCCCGGACAATCGAGGTGGGAACGGGGCGGTGGG 155256 36 100.0 36 .................................... CTTGATGCCCGCGCGGGTCAGGGGACTGGGAGCCTC 155328 36 100.0 36 .................................... GTCCCATTTTTTCTCACTTCCAAAAATCAATTACTT 155400 36 97.2 37 .......................G............ TCACATGCGGGGCGCGCGGTGCGCTCGATATCAGCCC 155473 36 100.0 36 .................................... GTTGGCTTCCGGCGAGGGCATCACGGCCTGTTGTGG 155545 36 100.0 36 .................................... TTCTCTTACGCTCTGCCTCTTGTTCGCGGTATGCCT 155617 36 100.0 37 .................................... CTCATCGACCGGATATATTCTGATGATTTCATTTGTG 155690 36 100.0 36 .................................... GTACTTCGCGACCGCGGCGGCGAACACATCCCACGG 155762 36 100.0 38 .................................... ATGCCAAGCCGCGACCGCCGCGGGGCCCGTGAGCACCT 155836 36 100.0 36 .................................... GCGCAGAACGGAGCCGGACAGTGAAATACGACATCG 155908 36 100.0 37 .................................... CTGACCACACCGCAATCTCGTGGGCCGAAGCCACATG 155981 36 100.0 36 .................................... GATCGAGCCTGTGCACTACGTCAGCGACCGGCTCTG 156053 36 100.0 38 .................................... GCGCCGCGGTGCACCTGTGGCACAAGCCCGGATGGTCA 156127 36 100.0 37 .................................... TCCGGTGGGGAAATTCCAGTGCCTGCGGTCGCATCAT 156200 36 97.2 36 ...........A........................ CATCCGCCCAAGAATGTCGATGTAACCAGTAGACGG 156272 36 100.0 36 .................................... ATCAGCGGTCTTATAAACAATATCGCCAGCAGTATG 156344 36 100.0 20 .................................... CCGCGGCGAAGACGATGTTC Deletion [156400] 156400 36 75.0 36 ...G..TCAA.CGA.C.................... CACTAGACGTGGTGATGATCGTCGGCCCGGCCTGAC 156472 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 19 36 98.2 36 GCCTCAATGGTGTCCGGCAAGAATGACCGGAATAAC # Left flank : CGTAGGAACACCCAGTTCACAAGGGCGCGAGCCCTCAATCAGTCACCGACACGATCCCAATCGGTCACACCAGACCCCCACCAAGTCGGAAGAGCCGGTAATCCGGATGGGTGTTGTCTCTGACGACCTGTACGCGTTGATCGAGCCGGTGTTGCCCTCTGGACGGCAGCCAGGCCACCCATTGAAGATTATCGTTCGCACGGGTTGAAGGGCACTATCTAACGTTGTCACACCGGCTCNCCCTGCCGCGGCTTGCCTAGGCAGTTCGGCGCCTGGCGGTCCCCTGCCGCAGTAATTGACTTAGCCTGCTCGCCTGCAGGGCCTACTCACACAACTCGACCCGAGCGCGCGGCAGCGCCAGCTCAGAATTGCCCACGCTGTCCCCGGCGTGCAGCGACCAGATCGCTCGGCCTTGGTACCCAAACCAACTCACCAGTGTGACGAAACTACCCTCGGCAGCCCCCGCTAGCGGCTAGGCCGGATCGGAGGGGGAAGTGATG # Right flank : CGGCTAGACATATTGGAGTCCTTTGACCCGACTTGGCTCAAATTAGTGTGCACCGTCAGCGCGGATTTTGATCAGTGCGACGCGGAGGTCATCGGGTAGTGGGTCGGCGGCGGTCAGGGTGTGGTTGCCAGCCTGGATTTTCACCGTCCGGTAGCGGCGCGTGGTTCGGACGAATCTCTTGATGCTCCAACCGGTTTGGGTCTCGATGTAGTGACTGACGGCCATCGCGGCGACGACGATGCTCAGGTGGGCGTCGATGGATTCGCGCAGGTGGTGGTAGATCGGGCGGGCCTGCAGGTCGTGCTTGGACATCCGGAAGGCTTTCTCGACGTGCCAGAGCTGGTGGTAGGCGTCGATTACGAACTCCGCGGACTGCTTGGTGAGGTTGGTGGTGTAGCCCTTCCACCCGGCCAGTGCTCGGCTTTTGGCTTCCAGCTCGCGGTTCACACTCTTGGTGGCGCCGGCCAGCTTGATGAACCGATTCCGCTTGACCGCGGCAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGTGTCCGGCAAGAATGACCGGAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 158509-158199 **** Predicted by CRISPRDetect 2.4 *** >NZ_PECY01000220.1 Mycobacterium marinum strain VIMS9 VIMS_contig000220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 158508 36 100.0 36 .................................... GGCGAAAACTTGGGTCCGCATCTCATCATCGGACAT 158436 36 100.0 35 .................................... CCGAATACTGGGTTGTTGTTTTCGTCGTAGCCGGT 158365 36 100.0 37 .................................... GACTGCAGCAGCGTGCCGATCCACGCCCGTAGGTCCG 158292 35 86.1 23 .......................GT-.G.....T.. GGCGAACATCGTCTTCGCCGCGG 158234 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 97.2 33 GTTATTCCGGTCATTCTTGCCGGACACCATTGAGGC # Left flank : CTTGTCGGTGAGCTTCCTGATTACGTCCCCATGGTGACAAGATGACGCGGCGCCGGTACCTAATGGCATATGACATCGCCGATCCCAAACGTTTGCGTCGAGTGTGCAGCCTGATGGAGGACCACGGAGAACGATTGCAGTATTCGGTATTCGTGTGCGATCTCAGTGTCGCGGAACTTGCGGAGCTCGAAGGTTCGGTCACAGCCGTTATGCATTTAGTTCAGGATAGCGTTGTCCGGATCGATCTCGGCCCCACTGTCTCGCCTGCGGCGATACGACAGATCGGCCGTCGTCGCTGGATGCCTGCGGACGGGCCACAGATCGTGTGACACCGCGAGCGGTCATATGATGGTCCGGGTTCGGAGCAGCACTCGTGCCCAGGTCGGAGATGGTGGCTGTGGTCGCACGCCTCGGGGCCAAGCGGACTGCAGATGCTCAAGTCTTCACCGCTCGCGGCGACGTGTATCATCCCAGGTCAAAGGACTCCAATATGTCTAGCC # Right flank : CATACTGCTGGCGATATTGTTTATAACCCGACTTGGCTCACGAGTCTGGTTCTGGGCTGACCGCAGGGTCTTGAACTGCATATTCTCCGTCGCATTTGGTGGGATTTGTGCACTAAACCGGGGCCGTAGGCTGCCGGGGTGGCCTATGTGCGGACTGTGAAGACCGCGTCGGGGGCCACGGCTGTTCAGATCGTGTGGTCCACACGGCGGGGCTCGCGGTCGATCGAGCATGTGGGTTCAGCCCACAACGAGGCCGAACTGGCCGCCCTGAAGGCAGCGGCTGCCGAGCGGTTGGCTGCCAACCAGGCGGTCCTTGACCTTGAAGTCAGCGCCCCGGCGGGTTCGGAGCCCCTGCCGATCACCTCGTCACAGATGACGCACCTGTGGGAGGGATTGTGTGCGGCCTACCGGATCCTCGGCTTCGAGGCAGTAACCAAGGGCGACAAAGTGTTTCGTGACCTGGTGCTGGCCCGGATCATTGAACCGAGCAGCAAGGTCGA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.16, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCCGGTCATTCTTGCCGGACACCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //