Array 1 1661348-1660372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023196.1 Bifidobacterium breve strain NRBB27 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1661347 33 100.0 35 ................................. AACGCGTACGACAGGGAGACGAACCCGAAACCCGA 1661279 33 100.0 34 ................................. TGCACGACCGGGACATGAACGCCGCCCTGAACAT 1661212 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 1661146 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1661078 33 100.0 33 ................................. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 1661012 33 97.0 34 ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 1660945 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 1660879 33 100.0 35 ................................. AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT 1660811 33 97.0 35 ..................G.............. TTCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA 1660743 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 1660676 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 1660609 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 1660541 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1660473 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1660404 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 98.2 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACTCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGCCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACACGTTCAACGCGT # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAACTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1671283-1668149 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023196.1 Bifidobacterium breve strain NRBB27 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1671282 33 100.0 34 ................................. CCAGAGCGAAGCACGGAAGGGTGCGCCCGCACTG 1671215 33 100.0 35 ................................. ATCACCCCGCCCGCCTCACTGGAATGCATGGAGAA 1671147 33 100.0 34 ................................. CATCGTATCCGGGGAACATCTGGACACCGAGCAT 1671080 33 100.0 35 ................................. CGGAAGAATATCGCTTGACCATCAAGGGCATGTTC 1671012 33 100.0 34 ................................. AAGACCTGCAAGCGGCGTCCGAAACTCCATTGTG 1670945 33 100.0 34 ................................. CTCCATTGGGCTGGATGATACATTGCATCATATC 1670878 33 100.0 33 ................................. ACGAGATGGAACAGCAGGGCGTGGCAACCTCCC 1670812 33 100.0 35 ................................. AATTCAGCAACAGTCCCATTAAATCACATTAAAAC 1670744 33 100.0 33 ................................. AAGTCGGGTGGCCCATGGCGCGGTCTTGCTTCC 1670678 33 100.0 34 ................................. TCACCTCCTGTTACAATGCGGCTGAGGTTGACTT 1670611 33 100.0 33 ................................. AGATTAACGACCGAGGATACGGTCTGCCGATTG 1670545 33 100.0 34 ................................. CACGTGAAACAAATCGCAACCGGGGAACGTAAAC 1670478 33 100.0 33 ................................. CTCGTAACACAGGCCGGCTATCAAGGCCGATTG 1670412 33 100.0 35 ................................. CAGCGCTTCGGGCACGACGGATATTGATATGCCCG 1670344 33 100.0 37 ................................. CATCATATCCGGAGAGCATCTGGACACCGAGCATGGA 1670274 33 100.0 35 ................................. ATAAACAATAATATACCCCACGGCAGTAAGCCGTG 1670206 33 100.0 34 ................................. CCTTGCAGTCGAACCCAGCCAAGGACGGTGTATG 1670139 33 100.0 34 ................................. TACAATGCCGTGAACAGCCTCTAAAAGCATTAAG 1670072 33 100.0 35 ................................. ATCATAATTATCACTGTTGCGCGGGGCCTCCATGA 1670004 33 100.0 33 ................................. ATACGACCCTTGCCGCCGCGCACCGTAGCCGCT 1669938 33 100.0 35 ................................. GCGTACTCGACGAACTGGTGGCACATGGCCTCGAA 1669870 33 100.0 35 ................................. GCCAACGCCGGCATGATCGGCAGCGACGCGGGCAG 1669802 33 100.0 33 ................................. TTCCACGAGACCGGCCACATGCTCGACTGGATG 1669736 33 100.0 34 ................................. ATCTGGAAGTAGATGATGACGATCAGGAGCCCGA 1669669 33 100.0 35 ................................. TCGCGGTGGCGGGAACAGCGAACACGAACAAGCGC 1669601 33 100.0 34 ................................. ATGGGCGGGCTCGCGGCCGATGCGAGGAACGGGC 1669534 33 100.0 34 ................................. GCATCCTCGAACAGCGCCGCCGCATCACCAACCT 1669467 33 100.0 34 ................................. TTATCCCCACAAACCAAATAAAAAAGCCCGAAAA 1669400 33 100.0 35 ................................. CTCATGCGTGGCCTTGTTGTTGAACCACGCCACAA 1669332 33 100.0 35 ................................. TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA 1669264 33 100.0 36 ................................. TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA 1669195 33 100.0 34 ................................. GCGAAAACCCGGACTTTGGGAGAGCGGACGGCGA 1669128 33 100.0 33 ................................. TGCATCATAATTGCGGCAACCTGACCGGCAGGG 1669062 33 100.0 33 ................................. TAACCGTGGTGACCTCCGTGATCACGGCGATCA 1668996 33 100.0 36 ................................. CGTATCGTGTACCGCAGCCGGGGTCGTGGTGTCTGG 1668927 33 100.0 36 ................................. AGGGTCAATCGCAGGATCAGCCTGGGCAAGAACGTC 1668858 33 100.0 36 ................................. ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC 1668789 33 100.0 35 ................................. GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG 1668721 33 100.0 35 ................................. CAAGAAGGAAAGTAAACGCATGAGCGGAACCCAAG 1668653 33 100.0 35 ................................. CTTGTACACGGCGCACATCGCCGCGCAGTCGAACG 1668585 33 100.0 35 ................................. CGCCTTGACGGGCAGATCAAAGGGGATATGGCGCA 1668517 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 1668451 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1668385 33 100.0 34 ................................. ACGTCCGTGACCGTCACGTTCGCGGCGTCACCAT 1668318 33 100.0 35 ................................. TGGAAGTGGAGTTCCGGCCTTTCCAGGAACGCTGA 1668250 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1668181 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 47 33 100.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAACCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTATAGCGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTGGGGCTGGTGCCGTTTTGTTGGACTCGTCGTTGATTCCATCACCACCAATCATGCCACAAGACCGAGCTCGCGTCGACGATCCATGATGCTCATGCCGAACTCCGTCTTGATCCGCCTGTCCCGGTACCAGACCATGTAGTCGTTGAGCATGTTGATGAACCCGTCCATCGAGACGCCCGCGAAGCTGCGCTTGTGGAAGAACTCCTGCCTGGGACGGCCGAAGAACCCCTCCGCGGCCGCGTTGTCCGGAGAACAGCCTTTCGCGCCCGTCGAACGCGTCAGGTTGTTGTCCGTGCAGATGCGGATCCATTCCGGCCACCGGTAGTGGCAGCCGCGGTCACTGTGGATGATCGGCTTCTCTCCGTCCTTGAGCGTGGAGCAGGCGTCGGTGAGCATGCCGTTGGCCAGCTCGGCGTTCGGGCTCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //