Array 1 235045-234621 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOCE010000007.1 Rubrivivax benzoatilyticus strain JA2-Glc 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 235044 35 100.0 30 ................................... GAGGCTTGTTTTTGCTTGGCGCTCATTTGA 234979 35 100.0 28 ................................... CGGCGAGAGCGTAAAGTTCGTTGATGAG 234916 35 100.0 30 ................................... TCACCAGTGCCACGCCGATCTCGTTCCATG 234851 35 100.0 31 ................................... GGGATATTTCTTTTTGAGCCTCCACGTATTT 234785 35 100.0 30 ................................... TCTTGCCAAAGGAGTGCGTGTACTTTCATT 234720 35 100.0 29 ................................... GCCGAAGAAGCGCTGTCACCAAAGATACG 234656 35 94.3 0 ................................TG. | T [234623] ========== ====== ====== ====== =================================== =============================== ================== 7 35 99.2 30 GTCAGCGCACCCCGAATTCCGAAGGGGATTGAGAC # Left flank : GGCCGGACGCCTCGCCACCGCCGGCGGACGTATGGTCCGCAACTACTACAGCGACGACGCCGCCGACGTCCACCGGCTGGTTCTGGAAATCGCGCAGCGTTTCGTTGCCGACGAGCCGATCGATGAGTCCCTGCTCGCCGGCCAGGGCACGCCGTGGTTCGTCCGGAAACGCGAATACGCCTGCAGTCGCGCTCCGCTCGACGTCCGGGCGCGCAGGGAGATGCAGGCGCTCTACGACGAGGTTACCCCTGGCGACGGTGAGCCGGCCTACCTGTCGGACGGCGTCTGGCTCGGCGCCGACGGCCGGCTGCAGGACGAACGATGACTGGCCTGCCGTTGCCGAAATGACCGCCATGTCTGGCAGCACATTGATTTCAAAGGGTTTTTGGCTTCTTGCCCTGGTCTGGAGGCCGTTTCGGGCCTCCGAGACGGCGTCCGGCCGGTTCTTGCCCGCAAGAGGGCTAGAATCTCGTTTCGCGACAGGCACTTGCAAGAGGTGC # Right flank : AAAAAATCGGCGAGCTTTTCATACGCCGCGGTGCATCAGCGACTGCAAATCGCGTGGCGTGAAATTGCCGAGCGACGCCATCAGCCCCCATCGCATTTCAACCGCGTCTTGACGCGACTCGGGGGCTCGCCGAGCGCTCGAGAGCCCGCGGGCTGACGCTCGTCCTGACCGCCAGCGCCGGGCGCGACGCCGCCCGCGCCATCTTCGCCATCTCGTGCCTCATCGCGGCCTGCGCCACGCAGCCGCTGCACGCCGCCCTCGGCGGCGCCCTCGCGGCGGCCGTGCGCCCGGCGGCCGAACGAGCCTTCACGGCCCCCTCGCGGCAACGTTGCCGATCCGGGCTGCAGCCGCTACTGCCACCAGACACTCCGGCCCCTCGATGAGCCGCCCCCGAACGGCCGGCGCATCGAGAAAAGGAGCCCCTGTGGCGCCCGCCCGGGTGTCGACGCAGGTGGCGCGGCAAGACGAGTCGATGTGCGGGAGGTGCGCGGCATTGGTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCGCACCCCGAATTCCGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 249500-250317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOCE010000007.1 Rubrivivax benzoatilyticus strain JA2-Glc 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 249500 35 100.0 29 ................................... GCTGTTCCTGCTGATGTCCTTCAGAGTTG 249564 35 100.0 30 ................................... TTCCGGGAACTCCTCCAGGAGTTCCTGCAC 249629 35 100.0 31 ................................... TCGTATGCCGATTGATCCGTGAGCCGATAGT 249695 35 100.0 31 ................................... TGCTTGGCGCTCATTTGAACTCCCTTAAGAG 249761 35 100.0 31 ................................... AAGATCTCGCCGGCGTCCATGCTCACCGAGT 249827 35 100.0 32 ................................... AAGGTGTGCTCATTGAGCATCGAGATGAATTT 249894 35 100.0 30 ................................... TACGGCAGCGCGACTGCGAGCTTTTGCTCG 249959 35 100.0 30 ................................... CTTGCTGTTACGGCCCGCGCTGTTGCCGGC 250024 35 100.0 30 ................................... TGCAGCATCTGCAGGGCTTCGGTGGTGAAA 250089 35 100.0 32 ................................... CACGTTGTATGGGTCGTCGGTGTGGTCTGGAG 250156 35 100.0 30 ................................... TCCCGTGATGGCGGCCCACAGCGCTTGAAA 250221 33 91.4 29 ....--.........G................... AATCCTGCTGCGGCCAGGGCCGCTAATAA 250283 35 74.3 0 ...............C.CG..G..C.C...CG..G | ========== ====== ====== ====== =================================== ================================ ================== 13 35 97.4 30 GTCAGCGCACCCCGAATTCCGAAGGGGATTGAGAC # Left flank : GCGCCGCGAACGGCGTTCGGCAGCGGGCACTTCGTCGTGCTCTGAAGCGATTCCGGGAGGCCCGCCGATGCTGTACTTCGTCGCCTACGACATCAGCTCCGACCGCCGCCGGCGGCGCGTCGCCCGAGTCCTCGAAGGCTACGGGTCGCGACTGCACGAGAGCGCCTTCCAGTGCGAACTGCGCGCCGGCCAGCTCGCGCGGCTGCGCCGGCAGGTGGAGCGGGTGCTGGACCCGGACGAGGACCGTCTGCACCTCTATCCGCTGTGCGAGCGCGACCGGCCCGACCGCTGGCACCTGGCCGCCAGCAAGCCGCAGGACCCGCCGAGCGCCTACGTCGTCTGAGAGCCGACCATGTCTGCCAGCACGTTGATTTCAAAGGGTTTTCCGGCTTCTCGCGGGTCGTGGCACCGATTTCTGGCTGCCGAGACGGCAAATGGCCGGATGCTGCCCGCAACGGGGCTAGAATCTCGTTTCCTGACAGGCACTTGCAAGAGGTGCT # Right flank : GGACGAGCGGCGAAGACGGACCGCCAGGCCAATGGCCCGGCACGCCACGTCAAGCCACGTGGATCTGCCCGGGCTCGATGCCCAACAGCCCGTACTGGCCATCTCTGGCGCCGCGGTCCGCCGGACCGGCGATGGCCAGCCGCGTCCCGAGTTCGGGGCCGAAGGCGCGCACCAGCGCCTTGCGGATCACCGACAACCGCGGCCGCAGGTCGGCGGGCTGCAGCGCGACCGACTGCCGCTCGACACCGACGCGCCGGCAGGCCTGGTCCATCAGCGGCTGCAGCATCCCGACGCTGGCGGCGACGTCCTTGCGCAGCAGCACCGCGCCCGGCGCGACGAGCGCCGCGCTCTCGCGCAGCGCCTGCTGACGCCGCAGCGCGAAGAACACGTACCAGGCCATCAGCGAGGGTTCCAGCAGCGCCTCGCCGATGCCGGCGACGCGGACCCGGCGCGCGGCCGGCAGCACGTCCAGGCGAACGCTGCCCAGCGAGCGCTGCGCG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCGCACCCCGAATTCCGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 162792-166175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOCE010000005.1 Rubrivivax benzoatilyticus strain JA2-Glc 5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 162792 37 100.0 34 ..................................... CGCGCCAACGACAAGAGCATCCAGAGCCTGACGC 162863 37 100.0 34 ..................................... GTGTACAGCTCGCGCTTGCCGCAGCTCGGGCAGG 162934 37 100.0 34 ..................................... AGCCAGGGGGGCGGCGTCGCGCCGGGCGAGCTGT 163005 37 100.0 33 ..................................... GCCGTGCGCTTGCTCAGCCATCAGTACGCGACG 163075 37 100.0 34 ..................................... AAGAACCTGTCGATCTACTGGCAGGAGGGCAGCC 163146 37 100.0 36 ..................................... CTCGTGACCCAGCGGGCATTGGAGCGGTAGCGGGCG 163219 37 100.0 34 ..................................... ATTCCAACGGCAGCGAAGTGCTGCTGGCCCTAAG 163290 37 100.0 34 ..................................... TTCAAGGGCGTCATCGACGGCGTCGACGCGCTCA 163361 37 100.0 35 ..................................... AAGCAGGACGCGACCGGCGGGCGCACGATCGCGCT 163433 37 100.0 33 ..................................... TTCCCGGTGTTGCCGTGCGGCTGGCCATGCTGG 163503 37 100.0 34 ..................................... TTTCGCGCCGCGGCCGACGGGTCGATGAGCAGTA 163574 37 100.0 34 ..................................... AGCACAGCATCAGGGGACCTCAATGAACGACCGC 163645 37 100.0 36 ..................................... CAGTGCATGAAAGCCGGTTCGGTCGCGCGTGCACCT 163718 37 100.0 34 ..................................... ACCGAGATCTCGGTGTTGTCGCCGGCCTTGGCCG 163789 37 100.0 34 ..................................... GTCTGGCGCCGGCAACGCCGGCGGTGGGCGGGGA 163860 37 100.0 35 ..................................... AGCCCGACACGGCGAAGCGGCGACGCCGGCGTGGG 163932 37 97.3 35 .........T........................... GGGAAGTGATGCGGCGCCACAAGCTGCAGCAGAAG 164004 37 100.0 34 ..................................... GTCGAGGAGATGGCTCGGCTGACCAACACCGCGC 164075 37 100.0 34 ..................................... TCGAACTGCGGGCGCGTCATTGGTCCATCTCCGC 164146 37 100.0 34 ..................................... ATCGCCATCGTGGGCGAGTCCGGCGCCGGCAAGT 164217 37 100.0 33 ..................................... GACATGGCCACCGACGCCTACAGCCACCCGGGC 164287 37 100.0 35 ..................................... GCCGAGTCGACCAACGTCTTGCCGAGCTCGTTGAT 164359 37 100.0 33 ..................................... AGCCGGCGGCTCGATCGTCCAGGGCTGCCCCGG 164429 37 100.0 35 ..................................... AGCCCGCGGGTGAAGGAGGCGCTGGCCTACCCGGT 164501 37 100.0 34 ..................................... TGGAGCAGCTTGACCACCAGGGCGCCGACGCCTT 164572 37 100.0 34 ..................................... ATGCCAGCCACCCGAAGTAGGCTGCCAGCAGCGA 164643 37 97.3 34 ..............A...................... AGGTCCGCTCGGTCGGGCTGGCGCTGGAGATCGA 164714 37 100.0 34 ..................................... GCGTTCAACCTCGGCCCCGGCGCGCTGCGCGCGT 164785 37 100.0 34 ..................................... AGGGCCAGATCGCGCCAGCACCACACCGGGTTGT 164856 37 100.0 34 ..................................... ATGCCGCCGGGTGCCACCACGCCGATGCGTGCCG 164927 37 100.0 34 ..................................... ACCGAGGCCAAGGCGCGCGAGGAAGTCGGCATGA 164998 37 100.0 33 ..................................... GTCGCAGGGGAAGTCGATGGCTGAAGTCGTGCG 165068 37 100.0 34 ..................................... TCGTCGCTGATGCGATCCTTGTGCAGCAGGTACC 165139 37 100.0 34 ..................................... TCGGCGAGCGTCTCGCTGTTGAGCTTGATGAGGT 165210 37 100.0 34 ..................................... CGCCGGCTCACGTCCGGCGAGCAGCCGGCGCAGC 165281 37 100.0 33 ..................................... TGCGGGTGGACGAGCAGCGGGCAGTTGAAGAGC 165351 37 100.0 35 ..................................... TGGAGCCGTCGGGCATGAAGTACCCGCACCTCGCG 165423 37 97.3 35 ...............G..................... CGTACTTGCGCCGGTTGTCCGTGCGGAAGCCCGTG 165495 37 97.3 35 ...............G..................... CTTCGATCTGTCGTTGATAGCCCGCGTGAGCGAAG 165567 37 97.3 34 ...............G..................... TACACAGCGACGCTGGCCACGGCCGCCGCCAAAC 165638 37 97.3 36 ...............G..................... GCGGTCCCGGCCGGCCTGTAGCCCTACTGCCCAGCA 165711 37 97.3 34 ...............G..................... AGCCCGCGGGTGAAGGAGGCGCTGGCCTACCCGG 165782 37 97.3 34 ...............G..................... AGATCACGGAGCCAGGTGATGCCGAGCCGGTCCA 165853 37 97.3 34 ...............G..................... CACTCCATCTCCAGCGGCTCGAGGCCCTGGTCGG 165924 37 97.3 35 ...............G..................... TTCGTCGAGGTCGCCGGTACCTTCGTGCAGATGGA 165996 37 97.3 35 ...............G..................... GACATCGGCCTGATCGGGCGCGTGCCGGAGATGCC 166068 37 97.3 34 ...............G..................... GATGCAGCGGTGCGGGCCGTGCGCGGCATCTGGG 166139 37 91.9 0 ............C..G..................T.. | ========== ====== ====== ====== ===================================== ==================================== ================== 48 37 99.2 34 GTCGCTGGCCGCTCCCGCGGTCAGCGTGGGTTGAAAC # Left flank : TGCGGTGATACGGGCCGCACTGAAATGCTCGTCATCGTCTGCTACGACGTCAATACGGAAGACCGGGCCGGCCGGCGCAGGCTGAGGCGCGTTGCAAAGGTGTGCGAAAGCACCGGGCAGCGGGTGCAGAAGTCCGTCTTCGAGTGCCAGGTGACGCTCGCTCAGATGGATCTGTTGGAGCGACGCCTGCTGGCCGAAGTGAACCTCGATAGTGACTGCCTGCGCCTCTACCGCATGGCCGACACCCGTGGATGCGAGGTTCGTGAGTACGGCAGGTTCAAGGCGACCGACTTCGAAGATCCGCTGGTCCTATGATGGGACAGCGCGAACCCCGAGCGGCGCTCTCGCCTCTCGGCGGTCCGCGCATCCTGCAAGTCCTTGTTTCCACGTGAGATACCTCATTGCAACGGCGTCCCAATGACGCTGCGCCCTGCGACCGTCAGCTGGTTCGCGATTGGCGCTGCTGCGGAGCCCTGGTGTGGCGAACTTGGATTCGTGGG # Right flank : CACGCACTGGGGGAGCTGACCTACATTTCGGCACCTCAAAGGCCGCCTCCGCCGAGACGGCGGCGAGCCTTGTCGCTGCGGGCGGACCCGATGGCATCCGTGGGGCGCTGCGTCTGCTGGAGGCCTGGGTGGCCGCACGCCTCGACGGGACTGGTGCACTCGACCTGCATGGCAGCCGCACCGCGCTGGCCGCGCGGGGGCGCGCATTGGTGGCCTGTCTCGCCATGCAACACCAGCTCTGCTCAGCCGCCTCGGTCGCGCGCTACTTCCACCGCGCCAAGTCGACGCTGAGCGAGCAGATGACGGCATGCCGCGCTCGCGCGCTGGACCGCACCATCCTCCAGACCCCGGCCCAGCGCATCGTCGACGAAGCCGCGGCCCTGACGCGGCGAACCCGTTGATCCGTCCGCGCTTCGCCTCCCCGCTCCTAGAATCCCCCCACCTCGCGCAGCACGAGCCCCCGGGCGATCAGACCGGTTGCGTTTCGGACGTTGCAGGCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGGCCGCTCCCGCGGTCAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //