Array 1 129538-127068 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG749140.1 Escherichia coli B088 supercont1.16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129537 29 100.0 32 ............................. GTTCATTTCAAATTAAGGTAAACGCTATGAAT 129476 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 129415 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 129354 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 129293 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 129232 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 129171 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 129110 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 129049 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 128988 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 128927 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 128866 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 128805 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 128744 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 128682 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 128621 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 128560 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 128499 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 128438 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 128377 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 128316 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 128255 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 128194 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 128133 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 128072 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 128011 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 127950 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 127889 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 127828 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 127767 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 127706 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 127645 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 127584 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 127523 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 127462 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 127401 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 127340 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 127279 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 127218 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 127157 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 127096 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155514-155241 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG749140.1 Escherichia coli B088 supercont1.16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155513 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 155452 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 155391 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 155330 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 155269 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCATTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //