Array 1 52-1178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCK01000016.1 Corynebacterium jeikeium strain Cj30184 262, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 96.6 32 ............................G TGCTCGACAGCGGGTGCTGTCTCTGCGGAGGC 113 29 100.0 32 ............................. GCCCAGATCACGCCAGTTAAGCCGGTCGGTGC 174 29 100.0 32 ............................. GGTTGGAGATACGGCCACTATCGCCGGGCGTG 235 29 100.0 32 ............................. GCCTTCTTGAAGGCTTCGGAGCCTCCCCCCTT 296 29 100.0 32 ............................. CGATCCCCCAGACTCGTCCTCAGATAAACATC 357 29 100.0 32 ............................. CTGTGGAACGGCCTGGTGAGCATTGCGTCGTC 418 29 100.0 32 ............................. CCGTGCATGATTGAGGTTGAGGGCGACCACCC 479 29 96.6 32 ............................T GTGTACACGGCTGATGAGGTTGATGAGTTGCT 540 29 96.6 32 ............................T TGCTACTACCCGTTGGACGGCGGCGGCGACGG 601 29 100.0 32 ............................. TTTTTCCACTCGTCGGAGTCGAGCCTGCGCTG 662 29 100.0 32 ............................. CGGTTGCTAGGCACACCTGCGCCCGAGCCGCC 723 29 100.0 32 ............................. GAGCCCAGACTTCAGGATTCCAGCGAACCGAA 784 29 96.6 32 ............................G AAGTTTCCAAGCTGGCGATGGCGAATGTGAAT 845 29 100.0 32 ............................. GTTGCTAAGGGTGGTCAGGACACCGTTAAGGG 906 29 96.6 32 ............................G ATTGAGCTCTTCACGGTGGTGCCTTCTGCCTC 967 29 96.6 32 ............................T CAATGCCGGTTTTCAGGTACTCGATAGCCATG 1028 29 96.6 32 ..........T.................. GTTTTCCGATCCATTTTCGATACGCAGATCAA 1089 29 96.6 32 .C........................... ACCAATCGAATTCTGTGCGACATTACGCAGGG 1150 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : GCGCCAGCGGGGATGAGCCGATCGCCCGCCGGGAGTGTGCGCCACGATGGTG # Right flank : GGCACTTTCGTCCCGTTGTTCACTTGGCTTGGGTGCTCCCCGCGCCAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 202-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCK01000125.1 Corynebacterium jeikeium strain Cj30184 1731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201 29 96.6 32 ............................T GACCACCTACACCACCGAGTACGACGAGACCT 140 29 100.0 32 ............................. TCGATCCCCTCCGCCGCCGCGCGCTTCAGGCT 79 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Left flank : GCGCCAGCGGGGATGAGCCGATCGCCCGCCGGGAGTGTGCGCCACGATGG # Right flank : CCTGGCAGGTTTTTTGCTTGCTCATGCCCCTAGGTGCTCCCCGCGCCAGCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 51-201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCK01000155.1 Corynebacterium jeikeium strain Cj30184 2248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 96.6 32 ......................C...... ATCATCACCGCGCTGATGCCCGTTATTCAGGC 112 29 100.0 32 ............................. GTTCGTGACCGTGACGCCAGGACAGGGCGATG 173 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : GCCAGCGGGGATGAGCCGTTTAAGCCTAGCCCCGTCGCCGGTTGCGCCCGG # Right flank : TCGCGGCGTTCAGCGCGTCCACAGCAGCAGCCAGTGCTCCCCGCGCCAGC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCK01000031.1 Corynebacterium jeikeium strain Cj30184 416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 96.6 32 ............................G ATTTTCACGGGTATTGCGAAGATTGTGGGCGG 113 29 100.0 32 ............................. TCCGCGTCGCGCTGCTCGTTCGCGCTCCGCAC 174 29 96.6 32 ............................G GAGGCTGGAAAGTCTCCGAAGAAGCTAGACAG 235 29 100.0 32 ............................. CAGGAACCATTGCCCTCGTCGCCGAACTTAGC 296 29 96.6 32 ............................G CCGCCTCTGATGCTGTTCCGCCAGCTAGCAGG 357 29 100.0 32 ............................. CGTCCTCACGCGCACGTTAGACCCGCTGGTCA 418 29 96.6 32 ............................G CTGGTCTTCAGAGCGCTGCCGTAATCCTTGGC 479 29 100.0 32 ............................. ATCCAGCACGCTAGATCAGCTCCTTTCGACGG 540 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : AAGTTGAACTAGAATCGGCTTTAAGGCTCAAAGAACCACAGCTCAGAGAGTG # Right flank : CTGGCAGGTTTTTTGCTTGCTCATGCCCCTAGGTGCTCCCCGCGCCAGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1080-3427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCK01000259.1 Corynebacterium jeikeium strain Cj30184 2483, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1080 29 96.6 32 ............................T GCCCACGTCCGGCCATAGTTCTCGGATGGTAT 1141 29 96.6 32 ............................G CAGTCGTACATGGGGACGTTTACTAAGGCGTT 1202 29 100.0 32 ............................. CGCACCCATCTGAGTAAACAGGCGCTGCATGT 1263 29 100.0 32 ............................. CCCTTCACGAAGCCAGCGATCAGCGACATTGC 1324 29 100.0 32 ............................. TTCACGGCAATGCCGAGAGGGCCACCGAGAAC 1385 29 96.6 32 ............................T CGGACTTCACGTCTTGGAGAGCCTTACGCGCC 1446 29 96.6 32 ............................G ACCGGCATTGACCTGGTCACGTTCTTTGTGGA 1507 29 96.6 32 ............................G TACCAGTCTGGTGTTGTGGAGATCAAGGTCTC 1568 29 100.0 32 ............................. TCATCCTCGACCACCTCGACAGCATCAGCAGT 1629 29 100.0 33 ............................. GATGTGCGACGACGCAACGAGTTCAACTCCTCA 1691 29 96.6 32 ............................T CAAGTTCCACTTAGACCGCACCTCCTCGGGTC 1752 29 100.0 32 ............................. CGCGACATGCGCCGACAGCTACACCACATCAA 1813 29 100.0 32 ............................. ACCTGCTGCGGGTCAAGAATCGTTTTACCCAG 1874 29 100.0 32 ............................. ACCAATCGAATTCTGCGCAACATTACGCAGAG 1935 29 96.6 32 ............................T CTTGCCCACGCTCGGAGCAAGCGTGGCGAATG 1996 29 100.0 32 ............................. CCATGACAGACCAGCAAGACAGCCAAGTAATC 2057 29 96.6 32 ............................G TCGCGTTCCGCTTGTTCCATGATTTTGTTCTC 2118 29 100.0 32 ............................. CTAGGCCGGGTGATCCTCTAATGCCACTAATC 2179 29 96.6 32 ............................T GTTCTTTGGCGCAATGCTGAAGAGATTCCCCA 2240 29 96.6 32 ............................T GCTGATGCCGCGGGCAAGTTTGGTGTGGAGTG 2301 29 96.6 32 ............................G CATGGGGCAAAAACCGCGCGTTCCGCAAACCG 2362 29 96.6 32 ............................G CTCGCTTCCGATAACGGCCTGGGTGGTGTGGC 2423 29 100.0 32 ............................. TCCTTAGCCTGCTTCGCAGCCTCACCAGAATC 2484 29 100.0 32 ............................. CACGAACCGCACTGTAAGGAGAACCTAACATG 2545 29 100.0 32 ............................. TACTTTGAGTACCAGCCGGATGTCCTGTGGAT 2606 29 100.0 32 ............................. TACCGTCGGCTTCGGATCTGGCTTGGTTGCCG 2667 29 96.6 32 ............................G AGCGTTGTCACGACCGCATGGAACGCCACGGT 2728 29 96.6 32 ............................G GACGGTGTTCTGTACCTGGCGCACACCAGTCA 2789 29 96.6 32 ............................T GGTCACCGTCAGTGGGACTACCCGCTGGGCAA 2850 29 96.6 32 ............................G GCAGGGTTAGCACTAGCATTCACAGCCAGAGC 2911 29 96.6 32 ............................T CCGGGTTAATGTACCCGATCCGCTGCCCCTCA 2972 29 96.6 32 ............................T ATACGCCGGAATCAACCCCTGATCCGCAGCAC 3033 29 100.0 32 ............................. CGAACCACGTGGCCGCCAATAGACGTGAAAGC 3094 29 96.6 32 ............................T GAGTCCGCTGGCCTGCTGGGCGCACTGGACAA 3155 29 93.1 32 .C..........................G ATTTCAGGTCAATTGCTGCAGACTCCCAGATG 3216 29 96.6 32 .C........................... ACGACCGACTGGAAGAAAACCCTCGACGAGAT 3277 29 100.0 32 ............................. AACGCGTTCAAGCGTACGGCCTATGGCATGAT 3338 29 100.0 32 ............................. TGAGCGCGCACCGCACCTTCATCTAGGAAATC 3399 29 82.8 0 ......................CAT..TT | ========== ====== ====== ====== ============================= ================================= ================== 39 29 97.6 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : ATTGATTCCGAATTGTTGCTCTGGTCGGATTTAGAGGTTGTCGCTTCAGGACATAACTGGTCGAACGAAGGACCAGTGGAATGATGGTTCTGGTTGTTTCTGCGTGCCCTGCAGGACTTCGCGGTGATCTAACACGGTGGCTTTTGGAGATTTCACCGGGAGTGTTCGTGGGGCGTCCCAGCGCCCGAGTGCGTGACCAGGTTTGGGAGCGCACGTGCGATCTGGTGAATGACGGTCGGGCAATCATGGTGTTTCAAGCAGCGAACGAGCAAGGATTTGATTTCAAGACCCACCGGCATAACTGGGTTCCGACTGATTTCGATGGTGTGAACCTGATTACGCGACCAAATAACCGAGCACCATCATCACGACGGCGTGGGTGGAGCAAAGCACGGCGAAGATAGATGCGTGGGATGCAGTTCGCGGGTCCAGCGGCTGGTAGTTAAAACAAGTTGAACTAGAATCGGCTTTAAGGCTCAAAGAACCACAGCTCAGAGAGT # Right flank : TAGGCCCGTTCTAGCGACAATCTGGAAGGCTCACTGAAGGGGATTTACTTAACCGGAACCTCTTTTCGCAGGAATGCCAGCTGCTCCTCAATGATCTCCGAGAACAGCGGCTCCACGTAGGGGTCGAAGTGGCCACCCTCGTGAATGCGAATCGTGGCGCGATGGACCTTGCCAGCGGCTTTGAGGGCGACATTTGTTGGAGCGACGGCGTCATTAGACATCACCTGGAAAAGCGCCGGGCAGGAAACATTCCCGGCCGTCCGCGCCGACGAATAGAAACCAATCAACGCCAGAATGCTGTTCGACGTGGCCGGTGTACCAACTCACGCGCCTATTCCTCCGCATCTAAAGGTAGGGGAAATAGGCTCTGACGTTCCGTTTTTCTGTGGGGCCAGCGGGGCTCGAACCCGCGACCAGCGGATTATGAGTCCGCGGCTCTAACCGACTGAGCTATAGCCCCAGTATGCGTCACCACTCGATGGAGCAGCTTGCTAACAAAA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //