Array 1 196710-197226 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSQ01000003.1 Cronobacter sakazakii strain MOD1_O21_16 Comp84_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 196710 29 93.1 32 .C.........A................. TCCCTTCGCATGTCTGGCGCTACGTTGATTAA 196771 29 93.1 32 .C.........A................. GCAACCCATTTCACGGCCTGCGCAGGCGTTCG 196832 29 100.0 32 ............................. GCCGCTGAATCAATAAAAGCTGGCGACTATCC 196893 29 100.0 32 ............................. GACTATGGCCCGGTCAAGGCCTGGCTCGACGC 196954 29 100.0 32 ............................. TTTTTGCCGTTCGCTGCGCCCTTATCGCTGTA 197015 29 100.0 32 ............................. TCAAAGCAGTAGCGTAACGTGAGGCATTTATG 197076 29 100.0 32 ............................. GGGCAGTATTTCGACTCTGTCGTCACCGCAAA 197137 29 100.0 32 ............................. TACGGCGCTTGCAGCTCTTGCGATCATTATGG 197198 29 89.7 0 .....................TA.....T | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCAAATCAGTACAAAGGGTTACCGTTAGT # Right flank : TACGCCACCTGATTCACGGCGCTGATGTGACATATGGATCACGATTTCAGTCATACCTTTATTGAACCCGCTTCGGCGGGTTTTGTCACATCCCGTTCCCTGTTACTCTTTTGGCACATTTATCAAAGGGAATAGGGATATGAAGAAGGTTGTCATGGCTATTATTTTAGGCTCTTTTCTAACTGGCTGCGCGCCTGGCTACGTTTATACGCCACCTTCTAAGGTGGAATATGATAAAACCATGCAAGAAGCAAAGCGCAAGGACGCAGAGTTTGCTGAAAAAGTAAAAAATATAAATTTAGATACTGCGGATGTTGGGGTAAAGCCGAAGGATTACCAATCTTTGGTTGAATCGGCGATTCGTGAAGGTTTGAAAGATCCAGACTCTGCTAAGTTCTACGACTTCACCTCGCCACGCAAAGAAGTAATGGTTGAACAGGGTGACTTTGTTTATGGCTACTCGACATGTGTTTATGTTAACGCCAAGAATTCATATGGTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCACGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 224304-225980 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSQ01000003.1 Cronobacter sakazakii strain MOD1_O21_16 Comp84_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 224304 29 93.1 32 .T..........C................ GGTACGCCGTGTTGCAGGACTGGGCTGTTTCG 224365 29 93.1 32 .T..........C................ ATCACGACGAGATTCTGTTTACGCTGCTGACA 224426 29 93.1 32 .T..........C................ CTTGCTCTGGAGGAATATTGTCGAACTGTAGA 224487 29 93.1 32 .T..........C................ GCGCCGGGTTAACGCCTGCGGGTAAAGCGCTC 224548 29 93.1 32 .T..........C................ ATTCCGGGCGTCCATATATGCGCCACAAATCG 224609 29 93.1 32 .T..........C................ GCTGCTATCTCGGGTATTTACGACGCGATCCA 224670 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 224731 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 224793 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 224854 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 224915 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 224976 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 225037 29 100.0 32 ............................. GATTACCGCCATCTCGTCACGCAACTTTTCAT 225098 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 225159 29 100.0 32 ............................. GTGGCTTGACTCCGCGCAGGGTCTGCCGTGGT 225220 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 225281 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 225342 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 225403 29 100.0 32 ............................. GCATTATCCAGGTGGGTAGCGTCATTCAGATG 225464 29 100.0 32 ............................. CTTCCACCGCCAGACTTACAGACTCCGCTCAA 225525 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 225586 29 96.6 32 ............C................ GTAGTGACGCTGACGTGATGGTCTGCTTCGGT 225647 29 93.1 32 .T..........C................ GCTCATTCATTTGAGTTCTCTCCTTTATTATC 225708 29 93.1 32 .T..........C................ CAGTACGGAAAAATGACCCGCGCGGCGGTCTC 225769 29 89.7 32 .T......G...C................ GAGAAATAACCCTTGTGGTCTGTTCGCCCTAT 225830 29 89.7 32 .T..........C....C........... TCAAAACCTGAAATTTTTAATTTCGCGGGTGT 225891 29 89.7 32 .T..........C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 225952 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 96.4 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTACTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTTGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAAATTTTCTCGCGCCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGTGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //