Array 1 135-1176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPEE010000014.1 Bifidobacterium bifidum strain 1001136B_160425_F1 NODE_14_length_20953_cov_81.0856, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 135 33 100.0 33 ................................. TGCAACGAAACCATCGAAATCGTTAAATGCCTG 201 33 100.0 35 ................................. CCAGTCTTGAAAACGTGCAGGTCGATAATCTGCCC 269 33 100.0 35 ................................. TACGGTGACGTCTATTCCGCTCGAATAAATCGCCA 337 33 100.0 35 ................................. ACGTACTGCGCTGCGTTCTGCCCGCCCACGTTGCC 405 33 100.0 34 ................................. ACCGCATTGCAGACGGCCGCGCAGTCGGTCGGCG 472 33 100.0 34 ................................. GATGCTGATGGTCGAGCAGTTTGATGCCGCATTG 539 33 100.0 33 ................................. CTCCCCAATCGGGTGACGCTGGCTCCGTCCCGC 605 33 100.0 35 ................................. ATCCCGTAGAACACCGCGAGTATCACTATCGGAAC 673 33 100.0 33 ................................. CTCGCGAGGTCGGCGCGCATGGTCTCGGAGCGT 739 33 100.0 34 ................................. GTCTCGAAATGGAGCCGGCCTTGGACGAACCGAA 806 33 100.0 34 ................................. TGATTAGCAAAACGCAGATGACTGACATTGCCGC 873 33 100.0 35 ................................. TCCCCGGTGGGCTCGGAGGCCAGCAACTCCGCCAG 941 33 100.0 34 ................................. CAGTGGATTAAGCAATAACTACTGGTACAAACGC 1008 33 97.0 35 ........G........................ GCTAAGAGAAGGTGACTATCATGACCGGGAACCGA 1076 33 100.0 35 ................................. TGGTCTCCAATCGTGATCTCCACGTCGTCGAAAGA 1144 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 16 33 99.8 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : GAACTGGACTAAAACCTACCGCTTTTTCGGAAGGAAAACTCACGCCACATTGGCCTATAACAACTTGACAAAACACAGGGGTGCGTGGATTGAAATGGGTTGACGGTCGGGGGGGGGGTCACCACGGTTGCTCCG # Right flank : TGAAGCGCTGCTGAAGGAAGTCAAGGCCGTGATCGACAATCCGGACGCCACCGCGAAGGACGTCGCGCAGATGCTCAAGCGGATGACGGACTTCGAGTACGAGTATGCGACTCCTGATCCCGATCCTGACCCGGCCCCGGGTCCCGATCCCGACCCGGAACCGGACCCCGACACTCCCGGTACGGATGACCCGTCCAAGCCCGGAACCGGCGACACGGATACGGACAAGCCCGGCAACAAGCCCGGTGACGGAGCGGAAGACAGTGGCAAGACCAACGACAAACCCAAGCCTCCGCTGTCGGCGACCGGCGTGAACGTGACCGCGATATCGGTCGCGGTCATGGCGCTCGCCAGCGCTGCGACGGTGCTGCTGACCATCAAGCGCCGTAGGGGCTGAACATGACCGGTGCCGGAGAGTCCAATGCTCTCCGGCACCGTCATATGTCGAACTCCTGCATAGGGTACCTTAAGTCAGCCTGATCTGATAGACTGTCTGCGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3414-64 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPEE010000011.1 Bifidobacterium bifidum strain 1001136B_160425_F1 NODE_11_length_60073_cov_84.3264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 3413 33 100.0 34 ................................. CAAAAAAGAGAATCTCTACTGGGGCAGCACCGTG 3346 33 100.0 35 ................................. GTCATTATGAGCGGAATCTTGGTTTTTACAAGGTA 3278 33 100.0 34 ................................. GTGTGTGCTAATATTGGTGGTGTCAGCAAGGAAA 3211 33 100.0 35 ................................. TCAGTACTTTCCGAAGGCTTATTCTGGCATCCCAA 3143 33 100.0 34 ................................. GTTGGCCACGCCGATATGCCCGCGCGTCACGTAG 3076 33 100.0 33 ................................. TTGAACTAGCTGGATCTTCAACCGCCCTATCGG 3010 33 100.0 34 ................................. AGTGCCGACTTGACGAAAGCGCAGCTGAATCCCT 2943 33 100.0 34 ................................. TCCATATTCGCTTGTTTGTCGGACTCGCCTAGCC 2876 33 100.0 35 ................................. GCCGCTGCGAAATGACAAGTTTGGGTCGAGTGTCA 2808 33 100.0 34 ................................. CCGCTGTCGTGCGTCCACCAACGCCTGTGAGATG 2741 33 100.0 37 ................................. AGGCGAAGCAAGTTGATAACAAAGCAACGCCTAACCA 2671 33 100.0 32 ................................. TCGCTCAGGCGCTTCGGCGGGGCGGGCACCAC 2606 33 100.0 35 ................................. TCGCCAAGCGAGGTATTGACTGGAAAACCGGCAAG 2538 33 100.0 34 ................................. CCGTCTATCGGAGTCTTTCGATCACGTCGAACGT 2471 33 100.0 36 ................................. CCATGGGGTGCGCGCCTTGGAATCGCGCAGCCAGTA 2402 33 100.0 34 ................................. TATTCATAACGTGACATGGCTTGAAGAGGTGAAA 2335 33 100.0 36 ................................. GTACCATGCAATATATTAGTCGTCTCAGTGTCAAAG 2266 33 100.0 35 ................................. TGTCTGATCGTGCGATTATAATTCGCTCCGCGATA 2198 33 100.0 34 ................................. TGCCATCGCTGACCATCAACCCCGATCTCGCGCA 2131 33 100.0 35 ................................. TTACCCGCGACACGCTGCCGGCCACCGGTATGAGC 2063 33 100.0 34 ................................. CCTGGCGCGCCCAGAGTCTTTCGACCACGGGCGT 1996 33 100.0 34 ................................. AGGGCACGCAACGCGGTGTTGAGCATGGGCGTGG 1929 33 100.0 36 ................................. CAGCAATCAAACAACACGCTCGACCTCAGCACGCTC 1860 33 100.0 34 ................................. ATTGAGAATACCCTCCAGCCGCTCGCGCTCAACA 1793 33 100.0 35 ................................. GAGACGCTGCACCTGTGCACCGACATGGAGGCCAA 1725 33 100.0 35 ................................. ACCCACGCCGCCGGGAAGATCATCATGCGGGCCGC 1657 33 100.0 35 ................................. CGCGACCAGATCGGCCAGTGGATACCGGCAGGCTT 1589 33 100.0 33 ................................. CGTTACCTCGATCTGCTGCAACAGCAGGGCAGC 1523 33 100.0 36 ................................. ACGGCAAGCTGCTCCCGTCGGGTGGTCTCATGGCCA 1454 33 100.0 35 ................................. CTGTCCGATACGTCGTGCGACCTGTTCGAGCTGCT 1386 33 100.0 37 ................................. CACGAGCCTAGTTTCTGATCGTCCGTTTCGATGCCCA 1316 33 100.0 35 ................................. TAAGCATTGCAATTACAGCGTGTCGCGTTATCACC 1248 33 100.0 36 ................................. GGGTTGACATATGTCGCCGTACCCGTCACCGTGATA 1179 33 100.0 33 ................................. CAACGTGCTCGCCATATCCGGCGCGGTGACACG 1113 33 100.0 33 ................................. AGCCCGTCGCGCTGCACGTGCAAACGAGCCTGA 1047 33 100.0 37 ................................. AGCGTCATCAAGGACACGTTCGAAAGCATGTGCGCCA 977 33 100.0 34 ................................. AATACACTCAGAGGCCTTTCTGGATCACTCACAC 910 33 100.0 36 ................................. GGAAAGAAGAAAGCCCCGGTGGCCGCGCCGGCCGAA 841 33 100.0 35 ................................. CTCAACCGTGACGACGAGGTCATCGTCATCGACCC 773 33 100.0 34 ................................. CGCGTGCCCGCCGACCGCCTGGGCGATCGCCTGG 706 33 100.0 35 ................................. AGGCATGCCTCCAGCAGTTGGAACGGGTTGCGGTC 638 33 100.0 35 ................................. ATTAATGGTCGACGTTTGCCGGTAAAATTTGCGCC 570 33 100.0 34 ................................. ATACTCAGTTCGCCGGTTCTCGCGTCATGCGCGA 503 33 100.0 34 ................................. TTGCGTAATGCGCGGAATGCAGTGGTGGCCCGTA 436 33 100.0 34 ................................. CGCGATGTCCTCAAGCAAGGCCGTTACCTCATGC 369 33 100.0 35 ................................. ATGGCATGCTTATCGGCATGCTCGATACCGTCGGC 301 33 100.0 35 ................................. TTGGCCAACAGCGGCAAGCCAATGGTCAACGGGCA 233 33 100.0 35 ................................. AAGCGCGCGAGCCTCATGGAGGACAACGGCGAGAC 165 33 100.0 35 ................................. AAGGCCCCGCTGCCTACCGGCGTGACTCAGGCCAA 97 33 84.8 0 ....................T..TT...TC... | G [70] ========== ====== ====== ====== ================================= ===================================== ================== 50 33 99.7 35 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : AATACGGTCAACGCGTGCAGAACAGCGTTTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATCTGGCGAAGATTATGGATGAGTCGCAAGACAGCCTGCGGTACTACAATCTTGGGGCGAAGTATTCTTCGAAGATTGAATATCGGGGAAGGCAGCGACATTTACCGGTCGATGGCGTGATGATGCTTTGACGCCGCATTGGCATGCGGCATTCGGCGGACTGGAGCGGTGTACGACGTGCGGAGATCGGCCGGTGCGAGCCTTGAGCTCTCATGAAGCACTGGGTCGTTCGCACCACGGTTCATGGCTTCTGAGGACGGTGTGTGTTCTTCTTGTCGTTTGATAACTCAAGAGTGAGTGATCTGCTGGCATATCGATTCAGCGGATTCGCATATCGGGGAAAATGCGGGTGAATCGTACGGTACAATTGATGCCGTGGAATGGGTGGAGTATCCATATTTTGAGATATGAAGTCCATTCTTGCG # Right flank : TGGTTTTAAGACCGGTTGAGCGTTTGGTTTTTAGTCCGAAAGAGCGGTAGGAATTAGTCCATTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //