Array 1 149250-147756 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDAW01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 531954 NODE_4_length_262080_cov_30.344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149249 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 149188 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 149127 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 149066 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 149005 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 148944 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 148883 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 148822 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 148761 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 148700 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 148639 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 148578 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 148517 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 148456 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 148395 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 148334 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 148273 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 148212 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 148151 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 148090 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 148029 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 147968 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 147907 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 147846 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 147785 29 93.1 0 A...........T................ | A [147758] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 166451-165385 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDAW01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 531954 NODE_4_length_262080_cov_30.344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 166450 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 166389 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 166328 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 166267 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 166206 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 166145 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 166084 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 166023 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 165962 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 165900 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 165839 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 165778 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 165717 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 165656 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 165595 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 165534 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 165473 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 165412 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //