Array 1 108641-106534 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQW01000002.1 Salmonella enterica strain BCW_3993 NODE_2_length_552589_cov_3.68269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108640 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 108579 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 108518 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 108457 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 108395 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 108334 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 108273 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 108212 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 108151 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 108090 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 108029 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 107968 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 107907 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 107846 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 107785 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 107724 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 107662 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 107601 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 107539 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 107478 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 107417 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 107356 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 107295 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 107234 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 107173 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 107112 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 107051 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 106990 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 106929 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 106868 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 106807 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 106746 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 106685 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 106624 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106563 29 89.7 0 A...........TC............... | A [106536] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126025-124899 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQW01000002.1 Salmonella enterica strain BCW_3993 NODE_2_length_552589_cov_3.68269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126024 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 125963 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 125902 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 125841 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 125780 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 125719 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 125658 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 125597 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 125536 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 125475 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 125414 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 125353 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 125292 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 125231 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 125170 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 125109 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 125048 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 124987 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 124926 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //