Array 1 23762-24952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXE010000022.1 Saccharopolyspora endophytica strain KCTC 19397 Saccharopolyspora_endophytica_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23762 29 100.0 32 ............................. ACGGCGGCTACCTGATCGCGGCGGCGGCCGTG 23823 29 100.0 32 ............................. ACCCAGCGGGTGGGGCCTGCTGGCTTTTGGGT 23884 29 100.0 32 ............................. GCACTGCCGGATCCGGTTCTGGACAAGGTGTC 23945 29 100.0 32 ............................. ACCCGGTACGGAGGAGTGTCGCTGCCGTCGTA 24006 29 100.0 32 ............................. GTCGAACCGACCGTGATCAGCAGCCTCAAGCA 24067 29 100.0 32 ............................. TCGATGGCGGCCGGCACGCTTCGGCGGATGTG 24128 29 100.0 32 ............................. CTCCTCGCCCAGGCGCAGGACCAGGCCGGAAC CG [24142] 24191 29 100.0 32 ............................. ATCCTCGCGATGGCCCGCACCGCCCGCTTGCA 24252 29 100.0 32 ............................. GGGAAGAACGCCGCGTTGGAAAAGCCCTGGCG 24313 29 96.6 32 ...........A................. TGCGAGCCGACCCAAGAAGCGGAGATCCTGCG 24374 29 100.0 32 ............................. CCACGAGACCACTCGATCACCCGCACCAGGTG 24435 29 100.0 32 ............................. AAGTGGCGGTTGCCGATGACCTCGGTGATCCA 24496 29 100.0 32 ............................. GAGGCGAGATCTTCCAGCCCCCATGTACCGCT 24557 29 100.0 32 ............................. ACCCGCAGGTCTTCGGGCTCGCCACCGCCTCG 24618 29 96.6 32 ...............A............. GAGGTAAAACCATGATGCCGCGCTCCACACGC 24679 29 100.0 32 ............................. CGACAACTCACTGACACGCAGGAACGGTGGAC 24740 29 96.6 32 .........................C... GTCCCGTCCGGCATCTGGGTGTACTCGCCCAC 24801 29 96.6 32 ...........................T. AGGTGGCACGCCGTTCGCGTCTGCATGCCGGC T [24805] 24863 29 93.1 32 ..........TA................. GGCGAAGCCACTGCGGCGGCCGACGCCATGCT 24924 29 82.8 0 ...T........T.G.........AA... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.1 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : ACGAGATAGCTCGTCCCGTCGACATGGAGCTGCACGTCCTCGAGTTGTCCAAGCAAGCTGTTACGCGAGTTGTCATGGTCATCCGTTGTCACGGGCCGCACGATAGACGTCGAGGCCGGGGATCATTGCGAGATTGGGGCGCCGATCCATCGGATTCACTTGTATGGCCGTGGGCAGGGTGGCGGATCGTACAATCGACCCACTGCCTCGTTTCGGCCAACTTTCATCCGGGTGTACAACCGCGCGGGCCTTCCAGCATCTGTCGCATGCCTCGTTATCAACGCCTGATCGAGGGAGAAGGTGCCCTGAAGATCTGTCCTCTCCACCAGGGCGACATCCTGGCGCTCCCCAACCCCACAGGACGCGGCTCCGAGGCCGTCACGGACCATGAGGGCGTCGGAAGTCATCGGGTGGTCAACGAACTGCCGGTCGCCGATCCGGGACCACCCCGAGATCACGAAAACGTGCAACGACCTTCCTGAAATGCCAGGTCGCGAAGT # Right flank : GTATTTGGTGGTCATGTAGCCACATGTCGAGTGCGGTCATCGAGGGGGTTTCTGTCCCGTCGTCGCAGCAGTGGAGCGCTGTCAGCTGTTTGGGTAGGTGGTTCTGACTCGCCGAGTGCACACCCGGGACTGTGGAAGATCACACGGCAACGAGAGTGGAGTTGCGGTCATTTTCCGCCACCCTCCGACCGCGCCTTCAGGCAGCGCCTTGAGTCGTTGTTGATCTTTGGGAGCAAAGATTTGGGAGGATTCTGGGAGGATGGAAGTGCGTTGAAGTGCACTCAACCGCACCTAGGTAACGGGAACGGCATCGCCGCGACCTGCTGGTTCTCGATTCTCGCAGGTCAGGGAGTGGGAGAGCGCTACCTTTTTTTTGACACGGTAGAGGTCACTGGTTCAATCCCAGTATCGCGCACCAATTCTTGATGCAGGTGAGAAGCCCTGTCGGCGTTGTTGCCGACAGGGCGTTTTGTTGTTCGGGAACGGTGTTGACCGCGGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27351-27805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXE010000022.1 Saccharopolyspora endophytica strain KCTC 19397 Saccharopolyspora_endophytica_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27351 29 93.1 32 ...C........G................ TGGGAGTGGGGCATCCGCTACCTCCTCGACGA 27412 29 96.6 32 ...C......................... CCCGCGCTGGTTGGCGTGCCGGCGGTCCAGGC 27473 29 100.0 32 ............................. TCGATCCGGCGCCACACCGCGGCTGGCGTGTT 27534 29 93.1 32 ...C..........T.............. TTCCGGTCGTAGGCGAGGTGGCGCAGCTGGCG 27595 29 89.7 32 ...C........T...........A.... TGCAGGGGCTGGTAGGGAGCGGGGAACTCGAT 27656 29 100.0 32 ............................. AAATTTATCGAGGGTCCGTGCGTCGCCTGGTC 27717 29 89.7 31 ...C....T.....T.............. CGCAGCGTGTTCTGGTTCGAAGCTTGGACCA 27777 29 86.2 0 ...C.......A..T.........A.... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.6 32 GTGTTCTCCACGCACGTGGAGGTGGTCCG # Left flank : GCGGGTTCGGGTTTACGCCGCGAGGTTACCCCGTGTCTTGGCGAAATCGAGGCAACGACGCCGAAGTTGTCCTCACGCCCGAGTCGCTCCGTCCCGACACGCCCTGGATGAGTGATCAGGACGACTATGTGATCCTTGCTCGCGACCTGGAAGCGAGCTTTGTGACCGTGACATGGGGCCTCACCGAGGACGGCAATGACGCCGTCACCACCGGCGAGTTCCAGGCGCCCACTGGTGACGCCGTCGACGCCGCCGACCTGATCAAGGCGGTATTCCTCGAAGATCAGTGAGAGTGGGGGCTCGTAGTTGGGCCGATTGGGTGCGTTGGTGCGGTCCGGTTCTCCGTGCGGCTGGGGATCCACGACACGGCCCCGGTGTAGCCGGTTGCACCCTGGCCGACGGCATCCTTCCAAGCGACGCCGAAGTTTCACACATCAAGGTGTACAAGCAAACGCTGGGCAGACCCAGCTACCCCTTCCTAAAACGCCAGGTCGAGAAGT # Right flank : GGGGATCGGAAGAGCTTGGGCGCGCCCCGATGGCGTGCTCTCCACGCAGGTTTCTGTCCCGCCGTCGCAGCAGTGGAGGGGCTATGAGCCGTTCGGGTAGGTGGTTATGACTCGCCGAGCGCACACCCGGGGCTGCGGGATAATCACACCGCGACGAGAGTTGGGCGGCGGTCCTTCCCGCCGTTGTTGATCTTTGGGGGCTCCCGGCCGCTTACGTTCACTCCGCAGTGCTTTTTAGGGATCAGATTTGCTCTGATCTGCGGCTTCGTGTTGCGCGGAACTAGTTTTCGGATGCTGCAGGGGCGGGGTTCGTGACCGTGGTGGGTTGACCAGGTGCCGCGGTGCTGGGTGGGTGTGTCGCGCGGGTTCGGTGGAGCGCGGTGAGGGGCGGTGTTGTGGGAGTTGGGGCGGCAAGAAGCCCTGCCGGATCAGGGGATCTGCGGGGCACGGTCTCTCAACGGTCGTCGAGTGTCCGGAATAGCAACCCTGGGTGTGGTTTT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 780854-780459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXE010000001.1 Saccharopolyspora endophytica strain KCTC 19397 Saccharopolyspora_endophytica_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 780853 29 100.0 32 ............................. CGCGTGGAGATCGTCCCGATCTGGGACACCGA 780792 29 100.0 32 ............................. GCCCGGCAGACCGCGACCACCGAGTCGGTTGT 780731 29 100.0 32 ............................. CTCGAAGTTCTGCGCCCGCTCCCGGCGAGCTC 780670 29 100.0 32 ............................. GTGCCAAAGGTGCCGTTTCCGCTGGGTTTACG 780609 29 100.0 32 ............................. GTGCCAAAGGTGCCGTTTCCGCTGGGTTTACG 780548 29 100.0 32 ............................. GAGTCACCATGGCGACCTCCCTGGACCGGGAC 780487 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGCTCTCCACCCGCGTGGAGGTGGTCCG # Left flank : CTCAACACACAGGACGCCAACGACGGCATCGAGCAGCAAGTCGTCGGCGCCATCATCGACCACCAAGGCGAGATCCTACTGCTCAAGCGCCCCATGGATGACTTCCGTGGCGGCACGTGGGAACTACCGTCAGGCAAGGTTGAACGCCACGACGCCGACCTTTTCGCCGCACTGCGCCGGGAAGTCAGTGAGGAAACCGGCCTGATCATCGCGGACATCACCGGGTACCTCGGCGCATTCGACTACACCTCCGGTTCTGGCAAACGCACACGTCAGCACACGTGGTCAACAACTCAGCGAAGCGTCGATCCCCGAGAAGATGTCGTACTTACCGAACACGACAACCAGGCTTGGGTGACCAACACCAGTGCGCACTCAGTCAGCAGCGAGGTCCAGCACCTCGTCGACACCCACTTCACCGCCGTAACCAGCTGACCCATAGGCCAAACAACGCCAGCACCAAACGAACAGGCAACCTCCAAAACCCCAGTTCACGAAGT # Right flank : CAAGCCATGTCAGCCGCACAAAGGGCGGCAACAAAATCAGAAGAAGTCGCCGGATAGTCCCAACAGATCTCGGCCAGCTGGACGTTCGCGCCTCGATACGCCTGCGCATCAATCACGCACTGGGCGCGCACACACGCAGCACTACCTGGGACGAGGCGCCAACTTCTGAGCGGCCAAGCGCCGTTCGGTGCGCAAGACGGCTTCGGCGAGCACCGGCCGCGCCTTGACCCACGTGCGGTGAACCGGGTCCTCCGGAGCGTAACGGCTGAAGATCTCTTCGATCCGCTCGACGAAGGCCAGGCGTTGCCCAGCCGGCCCCGTAGTGAGGTCAGCCGTAACCAGGGCGTCCAACAGGGCGGAGTCCTCGAATGAGAACTCGGCCAGATCGTCGGACCTCCCGCGCTCAGCTGCCTCGAACCGCGCCCCGGAGTGGTGCGCAACGAGGTTCACGATCACCTCCGACCACCCCTGTTCCCTGAGGTACCGGGCACCGTCGAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACCCGCGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 791497-792565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXE010000001.1 Saccharopolyspora endophytica strain KCTC 19397 Saccharopolyspora_endophytica_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 791497 29 93.1 32 ..T.....T.................... CAGGAGAAGCAGGCCAAGCACGACGAAGCCCA 791558 29 100.0 32 ............................. ACGATCCGGGCTCGACGGCTGGGCCGACAGAT 791619 29 89.7 32 ..................A.....AT... GACTATGACGCTGGCGTGGTCGAGGCGGTGTT 791680 29 89.7 32 ........A...............AT... CGCTGTTGGACGCGCTGATGTGGCTCGAACTC 791741 29 93.1 32 ........................AT... TCGAACTTGCCCGGCCCGTTCTTCGGCGGCTG 791802 29 82.8 32 ...T.....G.............AAT... GACGAGCGCGCGGCGATCGCGGTCTGGCGCGG 791863 29 96.6 32 .......T..................... ATCACGGCCCGGCTCATGCGCCGCAACAACGT 791924 29 93.1 32 ...................T...T..... CACCGGTTGAACGGGCCGCACCAGAGCTCGAA 791985 29 100.0 32 ............................. TTCGCCGAGATGGCGATCAAGGCCGGGCTGGC G [791996] 792047 29 96.6 32 ........................C.... GGCAAGAAACGGGCCGCGCAGCCGAGCTTGTG 792108 29 100.0 32 ............................. GCATGGCAGCGGCCTAACGGATGGCTGCCGAT 792169 29 96.6 32 ...G......................... TCCTCCAGGTCGTCCAGGGACTCGACCCGGTT 792230 29 96.6 32 .......................A..... CGGATGCCTACGTCCGGCTGGTGCGGTATCTC 792291 29 96.6 32 ..............T.............. TGCAGCGCGGCGGCGACGAGCCGCGGGTAGGC 792352 29 100.0 32 ............................. CCGGGCTCGTACCGGATCCGCGAGAGCCGGTT 792413 29 86.2 32 .....A................C.AT... TACGTCTGGCTGCGCCGCTGTGCGGTCGGATG 792474 29 89.7 33 ...T....................AT... GCTCGCAGAACGGGCGAACCAACGCGGACAGCA A [792498] 792537 29 86.2 0 ...........A...C........TT... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 93.7 32 GTGCTCTCCACGCACGTGGAGGTGGGCCG # Left flank : GGTGACCCGCTTCGAGGGAACCGGGATCGTCACCTACCCCGAACTACTGCACACCGCGGTGCGCGAGGGAATCGGCCGAGCCCGCACCTACGGCTGCGGCCTGCTGAGCCTCGGACCGATCTGAACGGAAACCGAGTGATGGAAGACAGCCCGCGCCGACGACTCAGCGCCCCCACTGTCGCGATGTTGCCCCGCGTAGCCGACTCGCTGTCGTTCCTCTACCTCGAACACTGCCGAGTCGTGCAGGACGACACCGGCGTGTGCGCCCAAATCGAGCGCAACAACGGCACCAGCAGCAGGGTCTATCTGCCCATCGCGGCGATCAGCACCCTGCTGCTGGGCCCCGGCACCTCAGCCACCCAACCCGCCATCGCCACCTGCGCCCGCCACAACACCGTCGTGCTGTGGACCGGATCCAACTCATCGCCTTCACCAACCCAGAACAGCACCAAGATCACGAAACCGTGGAAGCCCCATTCTGAAACACCAGGTCACGAAGT # Right flank : GCTACATCGGTGACTGGGACAGCCCGGTTGAACGATTTTCGCTGCCCCAGACTGCATCAACGGCGTTACACGTTCTTCCAGCACGTCCAGGAGCGAAACTTCCAACGTTCATTTCGCCAACGTGGTGCCGAGTGGGAATGAGGATTGTCTGGCGGTGTTCCAGGTCATACCTGATCGTGACCACGGGTCCGTCGCGGCAAGCAGAACCTGTGTCACGGGTTCGGTGACTGTGCCACGAAATCCTGCTTGAGTGCCGGGTGTGCGCAGTAGTGCGCTCTGCAAACCGTGGTTGTCGAACTCTTTTCGGCAGTAGGCCAAAGCGGTGTGCGCACGCCACACCTTGTGCGTGGCGTGCTGTGTCTTTGAGTCCTTGTCGAACACCTGGCGATAGGCCTCGTTGACGGCCTCGCGCAGCGCGGTCAAGGCGGCATGTGGCTCGATGTAGAGCTCGATGGCAACGGTGTTGACCACCGCTGGCCCGTACCGCAGCTCGATCGGAT # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [15-15] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 795530-795985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXE010000001.1 Saccharopolyspora endophytica strain KCTC 19397 Saccharopolyspora_endophytica_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 795530 29 96.6 32 .........G................... GGCACGATCTCGTGGACGGCCAGGGCGGCGAG 795591 29 100.0 31 ............................. ACCCACTCTCCCCGGGGGTGACGATGAAGTC 795651 29 100.0 32 ............................. CCCGCTGAGACCGAATGAAGAGCCTCTTCCGC 795712 29 96.6 32 ..............T.............. CTAGGCGTACCCCAACGATCCAAGCAAGGACT 795773 29 89.7 32 .C......................AA... GCGTGCACTGCGTTGCGCGGATGCCCGAGGAG 795834 29 93.1 32 ...T....................A.... ATGAAGGAACTCTTCCCGACCTGGCAAAACAC C [795848] 795896 29 93.1 32 .......T....T................ CGCGGTCAGTTGTTCGCTGCGGCCCGCAACGG 795957 29 93.1 0 .......T......T.............. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.3 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : GGAACCGAGTTCTGCGGCCATCACTCGGCCGCCGGGTCCTCGCCGGACACGCGGGCGATGACGCCGGCGAGGTGTGCTCGCGCGGCCTCATCGGTGCGGCGGTAGTCCTGCACGCACTGATTGAGGCGCCCGGAAACCTCCTCGGCATCCTCGGCGAGGTTGCTGACTCCGACATCCCACCGATCGCAGAACTCGCTCGCCGTGGTGGCAAGGCGCTGATGACCGAACGCCTCTGCCGGGCAATCAAGATCCTCTACAGGCTTGCGGTTCATCGCCTCGATCGTTTCGCGTACGCCCCGCGCGGCGTGGTCCAACGCGGTCAGGTCGACTCGAAAGCCGTCCACCACACAAACTCCGTCCCCAGCTATCTGGATTCCAGGCGACACGGTAGAAAACCAGGCAAGCCATCGGGCAGGAAGTACGGATCTTCCCTCGAATGGAGCAGACCTGTCATGACGGGAAACGTGCGACACCACTCCCAAAACTGCAGGTCATGAAGT # Right flank : GGCACTCACGGTCTTCGCTTTGGTTCGCGCAGCGCTCGCGGGGCCGGCGTTGTTTGCCCGCACCCGAGAGACCGGTGAACACGAGGTTATGGTGTCGTTGGCTAGGCTGGCCAGGTGGACAGCCATGATCGCCGTAGAGCGGAACAGATGCTCGTCGGGGTCCTGCACGCCGAATTCGCTGTCGCGCGGCACAACGCTGGTACCCGTGCACACGGACGTCGGTATCTTGGGCGGGCCGACTTGCTCTTGACCGAGGCAGAGCTGTTCTCCCCCGTAATCCAGCTCGATGTGCTTGGTTCTGATCGGCAGTGCTTCGCCACTGCCCAGGCCGTCGCGGCACGTGACAGCACGGTGCTCTATGCCGAAGGCGTCGCGATCGATGAATTGGGGATCGTCATCGAGCATGCGTGGTGCGTGGATGCCACGAGCGGGGAGGTCATCGAAACGACCTGGTCGACGCCGGGCGGCGCCTACCTCGGATTCGCCCTGTCTCCGACCTG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4603-2396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXE010000024.1 Saccharopolyspora endophytica strain KCTC 19397 Saccharopolyspora_endophytica_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 4602 37 97.3 38 ...........T......................... TTGGCCTGCCGGACCATCGCCGCACGCCCAGTGTGGGT 4527 37 97.3 39 ...........T......................... ACCCGGCGCATTTCGTACACCTCGCGGCCGTTGTCATCG 4451 37 97.3 37 ...........T......................... GCTGTCGTCGTCAGTGAAGGTGCTGATCTCATCGGTC 4377 37 97.3 39 ...........T......................... TGCGGCGCCGGCGGGTCTTCGACCGGGCTGGCCGCCGCG 4301 37 97.3 38 ...........T......................... AGGAGCAACGCGCTGCCAAGCGCTGAGCTGGCCACTGG 4226 37 97.3 36 ...........T......................... CGCTTCGGCCTTGGTCTGCTCGGCGGTGGCTTCGGC 4153 37 97.3 38 ...........T......................... TTTTCCCCCATGTAGGTACGTACTGGCTGGAACCGGCG 4078 37 97.3 36 ...........T......................... TTCGCCCGCCGCTGGCTGCGCCAGGTCACGACGATG 4005 37 97.3 39 ...........T......................... AGTGACCTGCTCGCTACGGTCACGGTCATCCCCCACGTC 3929 37 97.3 38 ...........T......................... AGCGGCATCAGCGAGCGCCTTTTCGCGGGCGTCGGCTG 3854 37 97.3 35 ...........T......................... AAGGAGCAGGCCGCCAAAGCCGCCAAGCAGCGCCG 3782 37 100.0 37 ..................................... CAGGACAAGCGTTACCTCCCGCTGGAGGTCACCCCGC 3708 37 100.0 38 ..................................... ATGCGGCGGTGGAGAACAGTGCCGATATCGCGGCCGTG 3633 37 100.0 36 ..................................... GCCGCGGCCGGCATCTGGCCGGGCCCGCCCCGGCCG 3560 37 100.0 38 ..................................... ATCTTCGACGGCAAAGCCGGTTCGGACTACATCCCGTT 3485 37 100.0 38 ..................................... AAATAGGTCTGCGTGACGTCGCGCTTGGCGCCGTTGGC 3410 37 100.0 36 ..................................... ACCATCGGCGGCACCGGCCACCAACCCCCGACGCCA 3337 37 100.0 40 ..................................... TCTCGCTGAAATCCCATGTGTCTGAAGGAGATTCCCTGTG 3260 37 100.0 45 ..................................... CTACCCCGGTAGCCTGATCGCCTGATCGCGCGTCCCGCCGGACGT 3178 37 100.0 37 ..................................... CTGGTCTGCACGCTGCAGGAGGGCCACCCCGGCTCAC 3104 37 100.0 39 ..................................... AGCAGCTGGACGCCCAACGGACTCGGCCTCGTTCCAGTG 3028 37 100.0 37 ..................................... CCTTCGGGTCGAGGGTCTCTGATCGGACCGCGTGGCG 2954 37 100.0 39 ..................................... GACAGCTCGCCACACGCGGCCGGCATCCTCTCGCTGGGC 2878 37 100.0 35 ..................................... ACCTTCAGAACGCGGAGATCCACGGCAGCGCGTCG 2806 37 100.0 37 ..................................... TTGAACACCGCCGGGGTGATCTGGTCCGGCAACGCCA 2732 37 100.0 37 ..................................... TTGAACACCGCCGGGGTGATCTGGTCCGGCAACGCCA 2658 37 100.0 38 ..................................... TGTGCCATCGTGGCGGGCCAGGCCCCGGCCGCGTTCAT 2583 37 89.2 38 ...............GA.................G.T CTGTCCAGCGGCGCGAGTCAGTCCGCGCTGGTGGCCAT 2508 37 100.0 39 ..................................... GAGCTCATCGCCACAGGCAAGGTCATCCCGACGCCACAG 2432 37 78.4 0 ..............G..A.........C.G...AGCG | ========== ====== ====== ====== ===================================== ============================================= ================== 30 37 97.9 38 GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Left flank : TTCCACTCGTGCAGGCACGGTTCCTGGCACGGCATCTGAGAGGCGACCGTCCGGCCTACACCCCGTGGGTGGCGAGCTGACATGGAACTACTGATCACCTACGACGTCGAGACCACCACGCCAGAGGGCCGTCGTCGACTCCGACGCGTTGCGAAGACCTGTGAAGGGCATGGGATCCGTGTGCAGAAGTCGGTGTTTGAGGTCGTCTGCTCGGACGCCGAATGGCTGCGACTCCGCCACCAACTCGAAACTGTGATGGACCCCGAAGACGACAGCATCCGGGTATATACCGTTCCGCGCGGAACGTTTTCCACCGCCCTGCGCCTCGGTAACTCGCCAACCGCGGGGCACGACGACCCGTTGATCTTCTAACCAACCCCACTTCGGAACCACAAGCGTTGCATGACACGCCGGAAGGTTCTCAACCAGTTCCCGGGCGTTTCGGTCACGAACCAGCATCCCGGTACTATTCCGAGCGCAGTAACCCCTGTTCAACCAGG # Right flank : TACGGGAGGCCTCAACTTCCGTTAGCTTCATCGGAGGTGAGAGTTCGAAACACGTCGGACTTCGAACTTACCGGTGTGTATCGGGGTCGTACTGCTCGATCTCGCATCGGTCGAGGTTTCCCTGCTGGAGGACCTCGAGGGCAGCGTCGGAGACCACGAGACGTCCTCGGGGTGTGAGTCCCACGTCGTCTTGGCCTGCCGTTCCGGTGACATAGAGCCAGCGGAATTCTGGGAACTCGGTCAGTCCGTGGCGCTCGAGACGCTCTTGAGCGTCTTCGCCGTAGGTGACCTCGGCTCCACGGATTTCGAAGGCGCCGAGTCCGGAACCGGCCAAAGCCGCGGCCATCTTCTCGGTGACGAGAAAGCACGGGTGGGAGGTGATCAGGTCGTCGCCGAACCAGTTGTCGATCTCATAGTGGAGGGCCCCCTCCACGCGGGGCGGGCGGACCGTGGTGTCCAGCACTGTCTCGTCCGCCAGGATGCCCGGGACATCGGGTCGC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : GTGGCGCCAGCTCTCCGGGGCTGGCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.40,-19.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 13555-14849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXE010000024.1 Saccharopolyspora endophytica strain KCTC 19397 Saccharopolyspora_endophytica_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 13555 37 100.0 38 ..................................... GCCGACCGGCTGAACCTGTGGAACCTGCCGCCGAAGCA 13630 37 100.0 35 ..................................... ACTGCCGAGTCGGAGCCTGCCCGTGCCCAGGTGCT 13702 37 100.0 36 ..................................... AAGACCGACGACGGCACGGAATCCACCGACCGGTAC 13775 37 100.0 39 ..................................... CACAACAGAGCCCTCGGAATCCCGCGCGAGTCCTCTGCC 13851 37 100.0 35 ..................................... ATCGAAGTCCTGAAGACGCTCTCCACGCTGGTTCT 13923 37 100.0 36 ..................................... CTGGTCTGCCCGTCACCTGGTCGCAGACATGCCGGC 13996 37 100.0 40 ..................................... TCCTAACCGACAAACTCAGATAACCAGGAGTAGAGATCAG 14073 37 100.0 35 ..................................... TCGGCGATCGACGACGGCGGGTGGACCGGTGCCGC 14145 37 100.0 39 ..................................... TGCGGCAACCCGGACTGCGAGGTCCCGCTGGACATCGAT 14221 37 100.0 38 ..................................... ACCGACGAGTGGGAGAAGGAGGCCAGCCTCAAGCTGCG 14296 37 100.0 38 ..................................... GCCGTCGTCGCCTCAACGAGGCCGGTCGTGGCCCGCGC 14371 37 100.0 39 ..................................... AGCGGATGGGGAGCTGCGCTCCCGAAGTTGTCGGCGCGA 14447 37 100.0 39 ..................................... AGCGGATGGGGAGCTGCGCTCCCGAAGTTGTCGGCGCGA 14523 37 100.0 39 ..................................... CTGCAGCCCCCAAGAGCAAGGCGACGGCGCCGTGGTGGT 14599 37 100.0 39 ..................................... TCCGGTTCCAGGCTGTACAGGCTCGCCGCCTCGCCGACG 14675 37 100.0 37 ..................................... AACTCCGCCGACCCCTACGGCACGGCGGAGCTGCGGG 14749 37 86.5 23 ...............T.............C....TGA TGACGAGCTGCCCGCGGCCCCTG CCA [14777] Deletion [14812] 14812 37 73.0 0 ...A..........T..........AT.T..TA.GGG | G [14843] ========== ====== ====== ====== ===================================== ======================================== ================== 18 37 97.8 37 GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Left flank : CACCGTGGTGGCCCAGGATCGCGAGTGACACCGGCCCGATCAAGCCGGCCAGCCAACCCGCACCGGCTTCCTTATGCGGCACTCCAACGGATTTCCCGGTGTCGGCGACGCCCGCCAAACCCTCCTGCCAACAGCGAGCCGCCTTGCCGGCGTCGTGGAAAAGCCCCAGCGCGTAGCCAAGGTCCTCAGCGCCGAACTCGCGCGCGAACCGCGAGGACAACGCCGCAGTCGACCGAGCATGCGCCGAAAGCCGATGCCACCGACCGTTACCGTCTCCACTATGCGCCCACATCCGTACCTCCAACCTCTCACGACACCGAACGGTCGATGAAGATGCGCCACGGTAGCGATCAACACCGACACGCGCGGGCACTTCCCTCGCTTCGGAACCGGGAGCGTCTAGTGACACGCCAGGAGATTCTCAAGCGAATCCCGCGCGTTTCAGTCACAACCAGATCACCGGGTACGCTTGGCCAACCAGTCACCCCTGCTCACGCAGG # Right flank : GACTGCCCGCGAGGAGCTCGTGTCGAGGACAGGGTTTCGACACGAGCTCCTCTGAGCGTTTTTCGGTCAGGCGGTCTTGGTGGCTGTTGGGGTGTTGGTGGCGAGTGGGTGGGGTTCGTTGGTGAGGGTGGCGAGTGCGGTGGCGATTTCGGTGATGCCGGCTTGGGTGTAGGCGGTGGTGGTGCCGGTGTCGCTGCTGGTGGTGGTGTGGCCTGCGTAGGCGCGGGCAATGGCGTAGCTGTGGCTGCGTTCGACCCAGGTGAGGGTGGTGTGGCGCAGCCAGTGGGTGCTGACGCCTTGGGTGTGGACCCAGGGCAGGTGTTGGCCGATGCGGGTCCAGAGGTGGTCGTAGCGTCGTTTGGTGATGGGCTGGTGGTTGCGGTACCGCAGGACCTGGTCGGTGGGTTTGGTGGCGCCGCGGTGCTGGGCGTGCTCGCGCAGGTGGGTCATGAGGGTGGGGGAGACGGGCTGCCAGCGGATGGTCTCGCCCTTCTCATGGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.60,-17.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //